Wall clock time and date at job start Tue Mar 31 2020 05:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46956 * 2 1 4 4 C 1.46759 * 124.34888 * 90.00716 * 3 2 1 5 5 C 1.54478 * 105.47337 * 162.96289 * 4 3 2 6 6 H 1.09004 * 110.96558 * 267.25321 * 5 4 3 7 7 C 1.50705 * 110.97004 * 143.53185 * 5 4 3 8 8 O 1.21303 * 120.00030 * 359.97438 * 7 5 4 9 9 N 1.34775 * 119.99871 * 179.97438 * 7 5 4 10 10 C 1.40145 * 119.99845 * 185.52593 * 9 7 5 11 11 C 1.38654 * 120.10140 * 24.81577 * 10 9 7 12 12 C 1.38248 * 120.00827 * 180.27587 * 11 10 9 13 13 C 1.38295 * 120.21091 * 359.76739 * 12 11 10 14 14 C 1.38196 * 120.19884 * 359.95704 * 13 12 11 15 15 C 1.38786 * 119.99013 * 0.02562 * 14 13 12 16 16 S 1.76201 * 120.10347 * 180.02562 * 15 14 13 17 17 C 1.81396 * 103.00368 * 0.02562 * 16 15 14 18 18 C 1.50698 * 109.47421 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99830 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00139 * 179.72273 * 18 17 16 21 21 N 1.31509 * 120.00326 * 180.27614 * 20 18 17 22 22 Si 1.86802 * 119.99915 * 0.27878 * 20 18 17 23 23 H 1.48504 * 109.46911 * 89.99687 * 22 20 18 24 24 H 1.48496 * 109.47326 * 210.00024 * 22 20 18 25 25 H 1.48507 * 109.47196 * 329.99850 * 22 20 18 26 26 C 1.54622 * 101.76702 * 25.41154 * 5 4 3 27 27 C 1.34419 * 124.35113 * 269.97418 * 3 2 1 28 28 O 1.21289 * 124.93939 * 0.43493 * 27 3 2 29 29 H 1.08997 * 109.46763 * 299.99321 * 1 2 3 30 30 H 1.08996 * 109.47117 * 59.99875 * 1 2 3 31 31 H 1.08999 * 109.46616 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47220 * 240.00378 * 2 1 3 33 33 H 1.09002 * 109.47525 * 120.00043 * 2 1 3 34 34 H 1.09000 * 110.25269 * 43.95393 * 4 3 2 35 35 H 1.09007 * 110.23992 * 281.95778 * 4 3 2 36 36 H 0.96996 * 120.00196 * 5.51838 * 9 7 5 37 37 H 1.08000 * 119.99415 * 359.97438 * 11 10 9 38 38 H 1.07999 * 119.89373 * 179.73937 * 12 11 10 39 39 H 1.08003 * 119.89989 * 179.97438 * 13 12 11 40 40 H 1.07998 * 120.00494 * 180.02562 * 14 13 12 41 41 H 1.09005 * 109.46968 * 60.00007 * 17 16 15 42 42 H 1.08997 * 109.47126 * 300.00193 * 17 16 15 43 43 H 0.96996 * 120.00564 * 179.97438 * 21 20 18 44 44 H 1.09003 * 110.48835 * 93.88503 * 26 5 4 45 45 H 1.09002 * 110.48692 * 216.52421 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2944 2.1619 1.2117 5 6 3.1749 3.3438 0.7487 6 1 4.2335 3.1029 0.8456 7 6 2.8381 4.5987 1.5123 8 8 1.9711 4.5784 2.3604 9 7 3.5002 5.7436 1.2528 10 6 3.2698 6.8801 2.0397 11 6 2.8025 6.7439 3.3380 12 6 2.5705 7.8665 4.1107 13 6 2.8075 9.1275 3.5948 14 6 3.2787 9.2731 2.3038 15 6 3.5148 8.1517 1.5209 16 16 4.1162 8.3339 -0.1252 17 6 4.2583 10.1327 -0.3112 18 6 4.7703 10.4562 -1.6911 19 1 4.9879 9.6594 -2.3869 20 6 4.9549 11.7697 -2.0676 21 7 5.3964 12.0522 -3.2737 22 14 4.5777 13.1479 -0.8644 23 1 5.7955 13.4628 -0.0750 24 1 4.1477 14.3555 -1.6140 25 1 3.4902 12.7210 0.0523 26 6 2.7702 3.4752 -0.7378 27 6 2.2716 2.0962 -1.1098 28 8 2.1220 1.6942 -2.2443 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 2.8321 1.5530 1.9385 35 1 1.3637 2.5311 1.6427 36 1 4.1363 5.7809 0.5215 37 1 2.6152 5.7608 3.7441 38 1 2.2025 7.7584 5.1203 39 1 2.6241 10.0012 4.2027 40 1 3.4631 10.2594 1.9042 41 1 4.9527 10.5212 0.4339 42 1 3.2796 10.5910 -0.1697 43 1 5.5260 12.9762 -3.5387 44 1 1.9754 4.2122 -0.8532 45 1 3.6335 3.7455 -1.3458 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078568846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:43 Heat of formation + Delta-G solvation = -42.069690 kcal Electronic energy + Delta-G solvation = -27379.251941 eV Core-core repulsion = 23487.781996 eV Total energy + Delta-G solvation = -3891.469944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.129 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.32617 -40.10740 -38.36028 -36.58821 -34.94809 -34.28782 -33.22157 -31.01513 -30.52610 -29.46830 -29.13937 -28.05043 -24.74857 -23.49597 -22.93028 -22.89142 -21.73920 -20.27664 -19.68245 -18.29268 -17.66438 -17.15053 -16.90523 -16.67813 -16.27527 -15.69035 -15.35981 -15.09289 -14.74241 -14.32568 -14.26042 -14.06574 -13.93050 -13.77953 -13.71876 -13.45174 -13.39658 -13.07164 -12.63160 -12.60423 -12.58372 -12.33052 -12.03653 -11.90721 -11.72009 -11.43275 -11.40677 -10.95158 -10.70715 -10.50807 -10.34038 -10.20292 -9.86987 -9.82042 -9.39745 -9.34557 -9.07216 -8.83455 -8.21325 -6.81031 -6.31854 -4.36593 1.27203 1.48108 2.12019 2.28114 2.35467 2.52978 2.89533 3.11799 3.18602 3.19856 3.32011 3.80851 3.88800 3.97012 4.18629 4.32160 4.47228 4.63669 4.74192 4.81834 4.99150 5.00259 5.05573 5.08577 5.14834 5.22335 5.32851 5.36493 5.39874 5.48110 5.53153 5.59648 5.61010 5.82794 5.98044 6.18283 6.23727 6.34343 6.36001 6.46400 6.49587 6.65917 6.74929 7.07306 7.21756 7.24503 7.82602 7.87011 8.12851 8.67622 9.22490 10.79685 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.002659 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.013104 B =10525.935665 C =12383.450823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.621 5.621 4 C 0.119 3.881 5 C -0.124 4.124 6 H 0.123 0.877 7 C 0.527 3.473 8 O -0.517 6.517 9 N -0.655 5.655 10 C 0.150 3.850 11 C -0.114 4.114 12 C -0.120 4.120 13 C -0.116 4.116 14 C -0.118 4.118 15 C -0.102 4.102 16 S -0.130 6.130 17 C 0.034 3.966 18 C -0.523 4.523 19 H 0.085 0.915 20 C 0.084 3.916 21 N -0.885 5.885 22 Si 0.876 3.124 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.265 1.265 26 C -0.149 4.149 27 C 0.522 3.478 28 O -0.526 6.526 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.416 0.584 37 H 0.145 0.855 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.129 0.871 41 H 0.039 0.961 42 H 0.044 0.956 43 H 0.270 0.730 44 H 0.113 0.887 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 -19.286 14.145 24.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.356 5.356 4 C -0.005 4.005 5 C -0.146 4.146 6 H 0.141 0.859 7 C 0.314 3.686 8 O -0.393 6.393 9 N -0.299 5.299 10 C 0.049 3.951 11 C -0.136 4.136 12 C -0.142 4.142 13 C -0.137 4.137 14 C -0.143 4.143 15 C -0.218 4.218 16 S 0.117 5.883 17 C -0.113 4.113 18 C -0.562 4.562 19 H 0.103 0.897 20 C -0.122 4.122 21 N -0.522 5.522 22 Si 0.702 3.298 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.189 1.189 26 C -0.189 4.189 27 C 0.310 3.690 28 O -0.402 6.402 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.254 0.746 37 H 0.162 0.838 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.131 0.869 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.588 -20.306 13.024 24.762 hybrid contribution -0.094 2.018 1.145 2.322 sum -5.683 -18.288 14.168 23.822 Atomic orbital electron populations 1.22173 0.95653 1.02408 1.02743 1.21359 0.94548 0.80733 1.03205 1.48359 1.66123 1.14006 1.07109 1.21970 1.00507 0.90951 0.87045 1.22244 1.03128 0.93569 0.95616 0.85869 1.20152 0.80938 0.84169 0.83353 1.90683 1.30530 1.84831 1.33272 1.43483 1.43085 1.09352 1.33942 1.17177 1.02823 0.84218 0.90852 1.21214 1.00483 1.00359 0.91531 1.20955 1.01492 0.92054 0.99724 1.21039 0.99876 0.97458 0.95283 1.21140 1.00970 0.97628 0.94586 1.21919 1.05383 0.94203 1.00258 1.85123 1.79147 1.16833 1.07220 1.21729 1.00322 0.86901 1.02387 1.20378 1.46039 0.94181 0.95572 0.89658 1.24822 0.93963 0.98163 0.95210 1.69843 1.44239 1.19858 1.18257 0.86840 0.79438 0.82029 0.81492 1.19675 1.20585 1.18934 1.22414 1.04960 0.97018 0.94523 1.20716 0.76778 0.87099 0.84439 1.90752 1.53462 1.74950 1.20997 0.92219 0.92131 0.91355 0.89885 0.90211 0.89565 0.88875 0.74594 0.83781 0.85981 0.86080 0.85271 0.94266 0.93791 0.91974 0.86861 0.86483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.24 37.16 0.38 -0.81 16 2 C 0.12 0.87 6.65 -4.04 -0.03 0.84 16 3 N -0.62 -5.43 2.93 -172.41 -0.51 -5.93 16 4 C 0.12 0.87 6.71 -3.13 -0.02 0.85 16 5 C -0.12 -0.94 3.55 -90.14 -0.32 -1.26 16 6 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 7 C 0.53 5.72 6.87 -10.98 -0.08 5.64 16 8 O -0.52 -6.86 12.68 5.54 0.07 -6.79 16 9 N -0.65 -7.99 5.18 -9.70 -0.05 -8.04 16 10 C 0.15 2.23 6.44 -83.43 -0.54 1.69 16 11 C -0.11 -1.59 8.72 -39.42 -0.34 -1.93 16 12 C -0.12 -1.54 10.04 -39.56 -0.40 -1.94 16 13 C -0.12 -1.58 10.04 -39.58 -0.40 -1.98 16 14 C -0.12 -1.92 9.36 -39.39 -0.37 -2.29 16 15 C -0.10 -1.72 6.12 -38.90 -0.24 -1.96 16 16 S -0.13 -2.47 20.55 -107.50 -2.21 -4.68 16 17 C 0.03 0.77 3.16 36.00 0.11 0.88 16 18 C -0.52 -14.03 9.68 -34.44 -0.33 -14.37 16 19 H 0.09 2.50 7.96 -52.49 -0.42 2.08 16 20 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 21 N -0.89 -25.72 13.96 55.43 0.77 -24.94 16 22 Si 0.88 19.99 27.47 -169.99 -4.67 15.32 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 26 C -0.15 -1.34 6.41 -26.75 -0.17 -1.51 16 27 C 0.52 5.90 8.02 -10.86 -0.09 5.82 16 28 O -0.53 -8.04 17.60 5.55 0.10 -7.94 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.65 7.93 -51.93 -0.41 0.24 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.80 6.96 -51.93 -0.36 0.44 16 36 H 0.42 4.65 7.64 -40.82 -0.31 4.34 16 37 H 0.14 1.92 5.79 -52.49 -0.30 1.62 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 39 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 40 H 0.13 2.17 5.88 -52.49 -0.31 1.86 16 41 H 0.04 0.86 7.18 -51.92 -0.37 0.48 16 42 H 0.04 0.99 6.80 -51.93 -0.35 0.63 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.11 1.11 7.89 -51.93 -0.41 0.70 16 45 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -32.67 384.02 -9.85 -42.52 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.22 Total: 4.82 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -2.92 Total: -10.13 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.22 Total: -38.91 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.17 Total: -14.73 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Atomic # 16 Polarization: -2.47 SS G_CDS: -2.21 Total: -4.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.67 -9.85 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078568846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.449 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds