Wall clock time and date at job start Tue Mar 31 2020 05:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46878 * 2 1 4 4 C 1.46775 * 124.35105 * 270.19530 * 3 2 1 5 5 C 1.54479 * 105.41055 * 197.24701 * 4 3 2 6 6 H 1.09002 * 110.97047 * 92.49474 * 5 4 3 7 7 C 1.50702 * 111.00033 * 216.24351 * 5 4 3 8 8 O 1.21288 * 119.99804 * 353.85012 * 7 5 4 9 9 N 1.34777 * 119.99883 * 173.85552 * 7 5 4 10 10 C 1.40142 * 119.99992 * 174.47888 * 9 7 5 11 11 C 1.38654 * 120.09480 * 335.17310 * 10 9 7 12 12 C 1.38250 * 120.00489 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.21225 * 359.95164 * 12 11 10 14 14 C 1.38199 * 120.19835 * 0.02668 * 13 12 11 15 15 C 1.38786 * 119.98861 * 359.74485 * 14 13 12 16 16 S 1.76204 * 120.10724 * 180.27775 * 15 14 13 17 17 C 1.81401 * 102.99622 * 0.23102 * 16 15 14 18 18 C 1.50701 * 109.47081 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00057 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99826 * 179.97438 * 18 17 16 21 21 N 1.31502 * 120.00064 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99647 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47147 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47227 * 119.99808 * 22 20 18 25 25 H 1.48495 * 109.47140 * 240.00001 * 22 20 18 26 26 C 1.54629 * 101.76838 * 334.37578 * 5 4 3 27 27 C 1.34412 * 124.35304 * 90.02479 * 3 2 1 28 28 O 1.21284 * 124.94138 * 359.61195 * 27 3 2 29 29 H 1.09000 * 109.47119 * 60.00231 * 1 2 3 30 30 H 1.09002 * 109.46851 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47501 * 300.00225 * 1 2 3 32 32 H 1.09001 * 109.47127 * 240.00400 * 2 1 3 33 33 H 1.09000 * 109.47119 * 119.99769 * 2 1 3 34 34 H 1.08993 * 110.45123 * 78.17580 * 4 3 2 35 35 H 1.09001 * 110.17275 * 316.17180 * 4 3 2 36 36 H 0.96998 * 120.00308 * 354.46534 * 9 7 5 37 37 H 1.07999 * 119.99482 * 0.02562 * 11 10 9 38 38 H 1.07997 * 119.89383 * 179.97438 * 12 11 10 39 39 H 1.08000 * 119.90086 * 180.02562 * 13 12 11 40 40 H 1.07996 * 120.00405 * 180.02562 * 14 13 12 41 41 H 1.09008 * 109.46908 * 300.00106 * 17 16 15 42 42 H 1.08997 * 109.47566 * 59.99665 * 17 16 15 43 43 H 0.97007 * 120.00089 * 179.97438 * 21 20 18 44 44 H 1.08996 * 110.48786 * 266.12304 * 26 5 4 45 45 H 1.08998 * 110.49053 * 143.47171 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2904 2.1635 -1.2118 5 6 3.1768 3.3412 -0.7496 6 1 4.2342 3.0957 -0.8480 7 6 2.8447 4.5984 -1.5115 8 8 2.0575 4.5588 -2.4333 9 7 3.4227 5.7667 -1.1686 10 6 3.2045 6.9115 -1.9469 11 6 2.8602 6.7877 -3.2843 12 6 2.6459 7.9183 -4.0505 13 6 2.7728 9.1750 -3.4873 14 6 3.1152 9.3084 -2.1551 15 6 3.3275 8.1790 -1.3770 16 16 3.7571 8.3453 0.3238 17 6 3.7867 10.1432 0.5631 18 6 4.1457 10.4537 1.9934 19 1 4.3372 9.6499 2.6888 20 6 4.2305 11.7641 2.4140 21 7 3.9978 12.7428 1.5672 22 14 4.6747 12.1489 4.1872 23 1 4.8857 10.8810 4.9310 24 1 5.9211 12.9555 4.2214 25 1 3.5712 12.9160 4.8186 26 6 2.7754 3.4733 0.7378 27 6 2.2715 2.0962 1.1097 28 8 2.1227 1.6940 2.2442 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.3606 2.5368 -1.6408 35 1 2.8237 1.5536 -1.9410 36 1 3.9895 5.8152 -0.3829 37 1 2.7594 5.8079 -3.7274 38 1 2.3781 7.8198 -5.0921 39 1 2.6038 10.0549 -4.0904 40 1 3.2130 10.2913 -1.7184 41 1 4.5286 10.5860 -0.1016 42 1 2.8037 10.5562 0.3369 43 1 4.0572 13.6647 1.8631 44 1 1.9840 4.2136 0.8551 45 1 3.6410 3.7395 1.3444 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078568848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:47 Heat of formation + Delta-G solvation = -47.224624 kcal Electronic energy + Delta-G solvation = -27349.252412 eV Core-core repulsion = 23457.558933 eV Total energy + Delta-G solvation = -3891.693479 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.29025 -40.05444 -38.26492 -36.57352 -34.88145 -34.26346 -33.31233 -30.83970 -30.48689 -29.08506 -28.65475 -28.02947 -24.71068 -23.58675 -23.17053 -22.78354 -21.79353 -20.19870 -19.66939 -18.25570 -17.53975 -17.10534 -16.69603 -16.33781 -16.24020 -15.66978 -15.29528 -15.09505 -14.68970 -14.44146 -14.24317 -13.97466 -13.91690 -13.76435 -13.66176 -13.27427 -13.06111 -12.90303 -12.60329 -12.43675 -12.33016 -12.30397 -11.97218 -11.84433 -11.69675 -11.42260 -11.30676 -11.00858 -10.79807 -10.53740 -10.23564 -10.09865 -9.78079 -9.73170 -9.30558 -9.22784 -9.06650 -8.69926 -8.10421 -6.67938 -6.32804 -4.38828 1.37699 1.60797 2.27741 2.30239 2.41651 2.55532 2.95483 3.17843 3.25828 3.30424 3.51502 3.83079 3.95325 4.02983 4.24767 4.36193 4.48846 4.65675 4.77186 4.82865 5.01197 5.05180 5.10408 5.19076 5.23291 5.27202 5.33856 5.38713 5.49402 5.50854 5.54756 5.69447 5.73821 5.83712 6.11403 6.19522 6.35978 6.46437 6.61428 6.75846 6.78457 6.87642 6.91107 7.19035 7.30604 7.60069 7.82165 7.86381 7.90582 8.62456 9.25843 10.78287 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.010647 B = 0.002757 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.228171 B =10154.124148 C =12485.841562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 N -0.621 5.621 4 C 0.120 3.880 5 C -0.123 4.123 6 H 0.124 0.876 7 C 0.526 3.474 8 O -0.518 6.518 9 N -0.654 5.654 10 C 0.146 3.854 11 C -0.116 4.116 12 C -0.123 4.123 13 C -0.116 4.116 14 C -0.115 4.115 15 C -0.094 4.094 16 S -0.170 6.170 17 C 0.078 3.922 18 C -0.520 4.520 19 H 0.069 0.931 20 C 0.069 3.931 21 N -0.888 5.888 22 Si 0.908 3.092 23 H -0.269 1.269 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.151 4.151 27 C 0.522 3.478 28 O -0.526 6.526 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.416 0.584 37 H 0.143 0.857 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.136 0.864 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.267 0.733 44 H 0.114 0.886 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.897 -20.237 -9.957 22.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.356 5.356 4 C -0.004 4.004 5 C -0.145 4.145 6 H 0.142 0.858 7 C 0.313 3.687 8 O -0.394 6.394 9 N -0.298 5.298 10 C 0.045 3.955 11 C -0.138 4.138 12 C -0.144 4.144 13 C -0.136 4.136 14 C -0.140 4.140 15 C -0.209 4.209 16 S 0.077 5.923 17 C -0.068 4.068 18 C -0.559 4.559 19 H 0.087 0.913 20 C -0.136 4.136 21 N -0.526 5.526 22 Si 0.735 3.265 23 H -0.193 1.193 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.191 4.191 27 C 0.310 3.690 28 O -0.402 6.402 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.253 0.747 37 H 0.161 0.839 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.153 0.847 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.132 0.868 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.295 -21.237 -9.042 23.196 hybrid contribution 0.239 1.534 0.222 1.568 sum -2.056 -19.703 -8.820 21.685 Atomic orbital electron populations 1.22176 0.95659 1.02410 1.02754 1.21357 0.94547 0.80746 1.03194 1.48367 1.66160 1.13937 1.07133 1.21952 1.00411 0.91013 0.86982 1.22249 1.03099 0.93649 0.95508 0.85800 1.20136 0.80122 0.84212 0.84253 1.90682 1.33367 1.85612 1.29742 1.43472 1.49069 1.07535 1.29688 1.17199 1.03533 0.84149 0.90574 1.21184 1.01029 1.00174 0.91380 1.20949 1.01861 0.92065 0.99570 1.21058 1.00271 0.97424 0.94874 1.21245 1.00550 0.97945 0.94217 1.21832 1.05355 0.94183 0.99558 1.85021 1.84878 1.20058 1.02372 1.21380 1.01018 0.82845 1.01607 1.20642 1.49425 0.92579 0.93303 0.91261 1.24948 0.94569 0.95597 0.98501 1.69943 1.47904 0.99702 1.35006 0.86270 0.78216 0.78676 0.83381 1.19331 1.20623 1.20606 1.22437 1.04921 0.97063 0.94676 1.20717 0.76789 0.87087 0.84433 1.90747 1.53568 1.74915 1.21004 0.92207 0.91357 0.92134 0.90203 0.89898 0.89004 0.89531 0.74672 0.83926 0.86098 0.86071 0.84666 0.93690 0.93672 0.92314 0.86813 0.86555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.24 37.16 0.38 -0.84 16 2 C 0.12 0.89 6.65 -4.04 -0.03 0.86 16 3 N -0.62 -5.52 2.93 -172.41 -0.51 -6.03 16 4 C 0.12 0.91 6.67 -3.12 -0.02 0.89 16 5 C -0.12 -0.97 3.55 -90.14 -0.32 -1.29 16 6 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 7 C 0.53 5.96 6.88 -10.98 -0.08 5.89 16 8 O -0.52 -7.14 12.74 5.55 0.07 -7.07 16 9 N -0.65 -8.37 5.13 -9.71 -0.05 -8.42 16 10 C 0.15 2.29 6.44 -83.43 -0.54 1.75 16 11 C -0.12 -1.71 8.72 -39.42 -0.34 -2.06 16 12 C -0.12 -1.68 10.04 -39.55 -0.40 -2.08 16 13 C -0.12 -1.71 10.04 -39.57 -0.40 -2.10 16 14 C -0.11 -2.01 9.36 -39.39 -0.37 -2.38 16 15 C -0.09 -1.68 6.12 -38.90 -0.24 -1.92 16 16 S -0.17 -3.35 20.56 -107.50 -2.21 -5.56 16 17 C 0.08 1.89 4.09 36.01 0.15 2.04 16 18 C -0.52 -13.78 9.13 -34.44 -0.31 -14.10 16 19 H 0.07 1.82 7.71 -52.49 -0.40 1.42 16 20 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 21 N -0.89 -24.66 13.28 55.43 0.74 -23.93 16 22 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.15 -1.38 6.30 -26.74 -0.17 -1.55 16 27 C 0.52 5.96 8.02 -10.86 -0.09 5.87 16 28 O -0.53 -8.07 17.59 5.55 0.10 -7.98 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.66 7.93 -51.93 -0.41 0.25 16 34 H 0.09 0.82 7.06 -51.93 -0.37 0.45 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.42 4.87 7.58 -40.82 -0.31 4.56 16 37 H 0.14 2.01 5.79 -52.49 -0.30 1.71 16 38 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.14 2.54 5.88 -52.49 -0.31 2.23 16 41 H 0.04 1.13 7.74 -51.92 -0.40 0.73 16 42 H 0.05 1.15 7.76 -51.93 -0.40 0.75 16 43 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.11 1.14 7.89 -51.93 -0.41 0.73 16 45 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 387.57 15.07 5.84 5.84 Total: -1.00 -31.82 387.57 -10.17 -41.98 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.26 Total: 4.96 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -2.87 Total: -9.28 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.18 Total: -38.37 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.17 Total: -15.05 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: -3.35 SS G_CDS: -2.21 Total: -5.56 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.82 -10.17 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078568848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.241 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds