Wall clock time and date at job start Tue Mar 31 2020 06:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99820 * 2 1 4 4 H 1.48499 * 109.47097 * 270.00046 * 3 2 1 5 5 H 1.48502 * 109.47330 * 29.99954 * 3 2 1 6 6 H 1.48494 * 109.47268 * 149.99794 * 3 2 1 7 7 C 1.37871 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99782 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00248 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47381 * 185.17807 * 9 7 2 11 11 C 1.46898 * 111.00186 * 200.36385 * 10 9 7 12 12 C 1.53002 * 109.47032 * 66.04724 * 11 10 9 13 13 N 1.46901 * 109.46580 * 179.97438 * 12 11 10 14 14 C 1.47012 * 111.00516 * 293.63271 * 13 12 11 15 15 C 1.53093 * 109.25713 * 177.60780 * 14 13 12 16 16 O 1.43019 * 109.25910 * 56.85181 * 15 14 13 17 17 C 1.43015 * 113.73764 * 301.32878 * 16 15 14 18 18 C 1.47018 * 110.99566 * 170.00045 * 13 12 11 19 19 C 1.46906 * 110.99814 * 76.40694 * 10 9 7 20 20 C 1.50696 * 109.47131 * 287.46556 * 19 10 9 21 21 C 1.38252 * 120.00186 * 107.24036 * 20 19 10 22 22 C 1.38213 * 120.00389 * 180.02562 * 21 20 19 23 23 C 1.38259 * 119.99687 * 359.95627 * 22 21 20 24 24 C 1.38210 * 119.99889 * 359.97438 * 23 22 21 25 25 C 1.38214 * 120.00100 * 287.40591 * 20 19 10 26 26 N 1.48019 * 119.99813 * 0.04031 * 25 20 19 27 27 O 1.21801 * 119.99981 * 185.77101 * 26 25 20 28 28 O 1.21799 * 120.00404 * 5.77487 * 26 25 20 29 29 H 0.97001 * 120.00016 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47049 * 65.17965 * 9 7 2 31 31 H 1.08997 * 109.46932 * 305.18192 * 9 7 2 32 32 H 1.09008 * 109.47020 * 186.04987 * 11 10 9 33 33 H 1.08997 * 109.46771 * 306.04365 * 11 10 9 34 34 H 1.08995 * 109.47121 * 299.99874 * 12 11 10 35 35 H 1.08993 * 109.47161 * 60.00202 * 12 11 10 36 36 H 1.08994 * 109.50866 * 297.54645 * 14 13 12 37 37 H 1.09001 * 109.50146 * 57.68125 * 14 13 12 38 38 H 1.09006 * 109.51209 * 296.92053 * 15 14 13 39 39 H 1.09003 * 109.54464 * 176.80981 * 15 14 13 40 40 H 1.08999 * 109.50845 * 298.73223 * 17 16 15 41 41 H 1.09004 * 109.54105 * 178.62575 * 17 16 15 42 42 H 1.09008 * 109.50384 * 302.33031 * 18 13 12 43 43 H 1.08990 * 109.50799 * 62.41363 * 18 13 12 44 44 H 1.09003 * 109.46883 * 167.46120 * 19 10 9 45 45 H 1.08996 * 109.46842 * 47.46460 * 19 10 9 46 46 H 1.08009 * 119.99975 * 359.97438 * 21 20 19 47 47 H 1.08003 * 120.00013 * 179.97438 * 22 21 20 48 48 H 1.08004 * 119.99722 * 179.97438 * 23 22 21 49 49 H 1.08001 * 119.99539 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0014 -2.5732 -0.1257 11 6 5.3888 -2.6840 0.3439 12 6 5.4407 -2.4152 1.8493 13 7 6.8282 -2.5266 2.3189 14 6 7.3153 -3.9086 2.2002 15 6 8.7796 -3.9677 2.6429 16 8 8.8891 -3.4679 3.9785 17 6 8.4241 -2.1240 4.1302 18 6 6.9562 -2.0463 3.7025 19 6 3.8735 -3.0532 -1.5082 20 6 2.4212 -3.3083 -1.8191 21 6 1.7316 -2.4489 -2.6541 22 6 0.3995 -2.6825 -2.9388 23 6 -0.2433 -3.7763 -2.3892 24 6 0.4464 -4.6363 -1.5556 25 6 1.7775 -4.3996 -1.2667 26 7 2.5145 -5.3172 -0.3690 27 8 1.9801 -6.3349 0.0337 28 8 3.6554 -5.0547 -0.0330 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.7632 0.9332 31 1 3.8752 -0.6013 -0.8393 32 1 5.7620 -3.6879 0.1410 33 1 6.0081 -1.9540 -0.1772 34 1 5.0676 -1.4114 2.0521 35 1 4.8214 -3.1452 2.3703 36 1 6.7164 -4.5614 2.8351 37 1 7.2352 -4.2349 1.1632 38 1 9.3869 -3.3568 1.9749 39 1 9.1290 -4.9997 2.6107 40 1 9.0210 -1.4596 3.5054 41 1 8.5157 -1.8221 5.1736 42 1 6.6139 -1.0131 3.7621 43 1 6.3510 -2.6688 4.3613 44 1 4.4381 -3.9782 -1.6253 45 1 4.2645 -2.2999 -2.1920 46 1 2.2338 -1.5944 -3.0833 47 1 -0.1392 -2.0109 -3.5908 48 1 -1.2844 -3.9586 -2.6114 49 1 -0.0556 -5.4909 -1.1267 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078686572.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:21 Heat of formation + Delta-G solvation = 12.216607 kcal Electronic energy + Delta-G solvation = -32738.193563 eV Core-core repulsion = 28476.731962 eV Total energy + Delta-G solvation = -4261.461601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 349.183 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.49547 -39.53962 -39.00793 -37.16663 -35.85502 -35.28807 -32.62198 -31.82450 -31.22206 -31.15060 -29.34305 -28.10211 -26.48770 -25.51423 -24.10861 -23.80216 -22.30127 -22.02637 -21.11177 -20.32716 -19.80863 -18.30053 -17.87039 -17.15581 -16.69758 -16.52835 -16.12803 -15.75069 -15.34593 -15.16112 -15.02686 -14.76542 -14.66854 -14.36571 -14.18376 -13.59461 -13.44715 -13.27641 -12.83136 -12.68337 -12.33490 -12.26841 -12.13571 -11.82229 -11.54669 -11.52304 -11.38235 -11.32191 -10.92209 -10.84312 -10.73377 -10.62349 -10.53490 -10.37345 -10.06079 -10.01140 -9.90611 -9.65426 -9.47502 -8.89458 -8.71769 -8.35093 -8.25781 -7.45749 -6.16917 -4.10643 0.61649 1.61156 2.08833 2.26270 3.15233 3.25897 3.28488 3.71917 3.86115 4.00214 4.30039 4.78665 4.90342 4.96050 5.01082 5.04830 5.07912 5.14982 5.16416 5.26901 5.30764 5.48014 5.51919 5.54805 5.56082 5.62892 5.68496 5.75134 5.81758 5.83448 5.90003 5.96317 6.00524 6.09936 6.17597 6.31101 6.37289 6.40144 6.60229 6.68415 6.74167 6.75647 6.90367 7.04385 7.12497 7.15458 7.24664 7.52882 7.81885 7.90016 8.46230 8.55019 8.92582 9.44800 10.94583 Molecular weight = 349.18amu Principal moments of inertia in cm(-1) A = 0.010071 B = 0.004138 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.710175 B = 6765.711041 C = 8827.304632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.072 3.928 3 Si 0.867 3.133 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.499 4.499 8 H 0.082 0.918 9 C 0.152 3.848 10 N -0.511 5.511 11 C 0.071 3.929 12 C 0.061 3.939 13 N -0.538 5.538 14 C 0.015 3.985 15 C 0.064 3.936 16 O -0.389 6.389 17 C 0.066 3.934 18 C 0.018 3.982 19 C 0.099 3.901 20 C 0.027 3.973 21 C -0.076 4.076 22 C -0.061 4.061 23 C -0.122 4.122 24 C -0.068 4.068 25 C -0.032 4.032 26 N 0.041 4.959 27 O -0.221 6.221 28 O -0.124 6.124 29 H 0.263 0.737 30 H 0.032 0.968 31 H -0.013 1.013 32 H 0.073 0.927 33 H 0.027 0.973 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.043 0.957 44 H 0.085 0.915 45 H 0.039 0.961 46 H 0.133 0.867 47 H 0.129 0.871 48 H 0.133 0.867 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.719 -5.218 -2.998 11.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.130 4.130 3 Si 0.695 3.305 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.537 4.537 8 H 0.100 0.900 9 C 0.026 3.974 10 N -0.235 5.235 11 C -0.057 4.057 12 C -0.067 4.067 13 N -0.264 5.264 14 C -0.113 4.113 15 C -0.013 4.013 16 O -0.308 6.308 17 C -0.011 4.011 18 C -0.110 4.110 19 C -0.029 4.029 20 C 0.025 3.975 21 C -0.095 4.095 22 C -0.080 4.080 23 C -0.141 4.141 24 C -0.087 4.087 25 C -0.116 4.116 26 N 0.557 4.443 27 O -0.422 6.422 28 O -0.350 6.350 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.005 0.995 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.103 0.897 45 H 0.057 0.943 46 H 0.151 0.849 47 H 0.147 0.853 48 H 0.151 0.849 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.203 -4.853 -3.233 10.895 hybrid contribution 0.080 1.217 0.226 1.240 sum 9.284 -3.636 -3.006 10.414 Atomic orbital electron populations 1.69889 1.05965 1.26677 1.50441 1.24838 0.94625 0.98384 0.95129 0.86992 0.80541 0.84550 0.78458 1.20443 1.21286 1.19268 1.21128 0.88687 0.94575 1.49302 0.89979 1.20431 0.97284 0.84087 0.95631 1.61739 1.18673 1.24614 1.18461 1.21862 0.89263 1.00482 0.94086 1.22127 0.86374 1.02199 0.95956 1.62188 1.22724 1.20989 1.20524 1.22823 0.96058 0.89779 1.02622 1.22684 0.95414 0.99586 0.83600 1.87954 1.84524 1.29369 1.28955 1.22640 0.93242 0.83877 1.01373 1.22744 0.97394 1.01469 0.89438 1.21014 0.90897 1.00185 0.90757 1.19465 0.96860 0.89724 0.91461 1.20839 0.94391 0.97060 0.97198 1.21296 0.94269 0.95397 0.97037 1.20917 0.99869 0.95092 0.98192 1.20766 0.91368 1.00019 0.96586 1.20658 0.93612 0.95870 1.01470 1.43473 1.00924 1.00363 0.99576 1.94457 1.71343 1.16465 1.59900 1.94475 1.02838 1.78778 1.58951 0.92750 0.95052 0.99497 0.90872 0.95433 0.90374 0.93440 0.93683 0.89117 0.92520 0.88677 0.92458 0.88754 0.89744 0.93904 0.89667 0.94298 0.84949 0.85278 0.84944 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.93 13.96 55.43 0.77 -24.15 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.87 20.13 27.37 -169.99 -4.65 15.48 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.10 6.69 56.52 0.38 -5.72 16 7 C -0.50 -12.71 7.30 -34.44 -0.25 -12.96 16 8 H 0.08 2.33 6.14 -52.48 -0.32 2.01 16 9 C 0.15 3.36 3.68 -4.98 -0.02 3.35 16 10 N -0.51 -9.92 3.09 -237.51 -0.73 -10.65 16 11 C 0.07 1.19 4.44 -3.82 -0.02 1.17 16 12 C 0.06 1.00 4.93 -3.82 -0.02 0.99 16 13 N -0.54 -7.61 4.73 -234.32 -1.11 -8.72 16 14 C 0.02 0.20 5.44 -3.71 -0.02 0.18 16 15 C 0.06 0.71 7.01 37.21 0.26 0.97 16 16 O -0.39 -4.98 10.83 -35.23 -0.38 -5.36 16 17 C 0.07 0.73 7.01 37.21 0.26 1.00 16 18 C 0.02 0.23 5.64 -3.71 -0.02 0.21 16 19 C 0.10 1.74 4.14 -4.97 -0.02 1.72 16 20 C 0.03 0.50 3.24 -104.63 -0.34 0.16 16 21 C -0.08 -1.31 8.10 -39.59 -0.32 -1.63 16 22 C -0.06 -0.98 10.05 -39.58 -0.40 -1.38 16 23 C -0.12 -1.89 10.05 -39.58 -0.40 -2.28 16 24 C -0.07 -1.17 9.56 -39.59 -0.38 -1.55 16 25 C -0.03 -0.61 6.27 -79.95 -0.50 -1.11 16 26 N 0.04 0.82 4.45 33.96 0.15 0.97 16 27 O -0.22 -4.51 18.46 -29.46 -0.54 -5.05 16 28 O -0.12 -2.45 13.46 -29.46 -0.40 -2.85 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.03 0.72 5.29 -51.93 -0.27 0.45 16 31 H -0.01 -0.28 6.90 -51.93 -0.36 -0.64 16 32 H 0.07 1.14 5.65 -51.92 -0.29 0.84 16 33 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 34 H 0.08 1.41 6.14 -51.93 -0.32 1.09 16 35 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.10 6.38 -51.93 -0.33 0.76 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 1.03 8.09 -51.92 -0.42 0.61 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.09 1.39 6.29 -51.93 -0.33 1.06 16 45 H 0.04 0.64 7.59 -51.93 -0.39 0.24 16 46 H 0.13 2.15 7.99 -52.48 -0.42 1.73 16 47 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 48 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 49 H 0.14 2.16 7.62 -52.49 -0.40 1.76 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -30.07 383.16 -10.64 -40.71 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.24 Total: 3.22 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -2.28 Total: -9.37 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: -0.92 Total: -42.55 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -1.32 Total: -13.26 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.65 Total: 15.48 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.07 -10.64 -40.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078686572.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.922 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds