Wall clock time and date at job start Tue Mar 31 2020 06:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46500 * 120.00438 * 2 1 4 4 C 1.50696 * 109.47188 * 90.00078 * 3 2 1 5 5 H 1.08003 * 120.00087 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99956 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46845 * 60.00735 * 8 6 4 10 10 H 1.48503 * 109.47399 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47295 * 300.00832 * 8 6 4 12 12 C 1.34783 * 119.99758 * 180.02562 * 2 1 3 13 13 O 1.21284 * 119.99457 * 179.97438 * 12 2 1 14 14 C 1.50697 * 119.99818 * 359.97438 * 12 2 1 15 15 N 1.46904 * 109.46619 * 180.02562 * 14 12 2 16 16 C 1.47012 * 111.00349 * 293.63521 * 15 14 12 17 17 C 1.53102 * 109.25634 * 177.60808 * 16 15 14 18 18 O 1.43019 * 109.25523 * 56.85173 * 17 16 15 19 19 C 1.43012 * 113.73781 * 301.32121 * 18 17 16 20 20 H 1.08995 * 109.50952 * 298.74023 * 19 18 17 21 21 C 1.53005 * 109.54208 * 178.63034 * 19 18 17 22 22 N 1.46495 * 109.47043 * 65.19861 * 21 19 18 23 23 C 1.39045 * 120.00153 * 180.02562 * 22 21 19 24 24 C 1.39477 * 120.15834 * 0.02562 * 23 22 21 25 25 C 1.38557 * 117.91015 * 180.02562 * 24 23 22 26 26 C 1.38823 * 118.03294 * 359.97438 * 25 24 23 27 27 N 1.31783 * 120.02012 * 359.97438 * 26 25 24 28 28 N 1.28358 * 122.28242 * 359.75868 * 27 26 25 29 29 C 1.47018 * 110.99749 * 169.99990 * 15 14 12 30 30 H 1.08996 * 109.47979 * 89.99530 * 1 2 3 31 31 H 1.09003 * 109.47435 * 210.00291 * 1 2 3 32 32 H 1.09000 * 109.46971 * 329.99659 * 1 2 3 33 33 H 1.09001 * 109.47049 * 330.00295 * 3 2 1 34 34 H 1.09004 * 109.47137 * 210.00789 * 3 2 1 35 35 H 0.97000 * 119.99806 * 0.02562 * 7 6 4 36 36 H 1.08991 * 109.47311 * 299.99855 * 14 12 2 37 37 H 1.08995 * 109.47079 * 60.00574 * 14 12 2 38 38 H 1.08999 * 109.50433 * 297.54341 * 16 15 14 39 39 H 1.08995 * 109.50677 * 57.67447 * 16 15 14 40 40 H 1.09001 * 109.50848 * 296.91322 * 17 16 15 41 41 H 1.09001 * 109.53565 * 176.80441 * 17 16 15 42 42 H 1.08998 * 109.46959 * 185.19898 * 21 19 18 43 43 H 1.09004 * 109.46699 * 305.20191 * 21 19 18 44 44 H 0.97005 * 120.00140 * 0.02562 * 22 21 19 45 45 H 1.08000 * 121.04579 * 0.02562 * 24 23 22 46 46 H 1.07995 * 120.98835 * 179.97438 * 25 24 23 47 47 H 1.07998 * 119.98823 * 180.02562 * 26 25 24 48 48 H 1.09007 * 109.50758 * 302.33067 * 29 15 14 49 49 H 1.08997 * 109.50634 * 62.46066 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0982 1.0957 2.2417 6 6 3.1271 2.8773 1.6727 7 7 3.5544 3.6174 0.6731 8 14 3.4391 3.4161 3.4338 9 1 4.2416 2.3808 4.1334 10 1 4.1816 4.7022 3.4339 11 1 2.1418 3.5940 4.1343 12 6 2.1388 -1.1673 -0.0005 13 8 3.3516 -1.1672 -0.0010 14 6 1.3852 -2.4723 -0.0005 15 7 2.3399 -3.5889 -0.0005 16 6 3.1005 -3.6318 -1.2578 17 6 4.1221 -4.7702 -1.1913 18 8 3.4413 -6.0001 -0.9281 19 6 2.6909 -5.9936 0.2893 20 1 3.3640 -5.8307 1.1310 21 6 1.9778 -7.3368 0.4582 22 7 2.9718 -8.3996 0.6270 23 6 2.5594 -9.7163 0.7984 24 6 1.2002 -10.0291 0.8096 25 6 0.8415 -11.3560 0.9843 26 6 1.8558 -12.2915 1.1366 27 7 3.1162 -11.9073 1.1121 28 7 3.4559 -10.6807 0.9458 29 6 1.6548 -4.8677 0.2378 30 1 -0.3635 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6085 2.0284 -0.5138 34 1 3.1499 1.1383 -0.5140 35 1 3.3921 3.3378 -0.2414 36 1 0.7590 -2.5302 0.8896 37 1 0.7583 -2.5298 -0.8903 38 1 2.4181 -3.8033 -2.0903 39 1 3.6200 -2.6845 -1.4014 40 1 4.8369 -4.5716 -0.3927 41 1 4.6497 -4.8425 -2.1424 42 1 1.3341 -7.2984 1.3369 43 1 1.3739 -7.5411 -0.4261 44 1 3.9177 -8.1847 0.6191 45 1 0.4509 -9.2612 0.6861 46 1 -0.1965 -11.6538 1.0014 47 1 1.6120 -13.3345 1.2743 48 1 1.1190 -4.8224 1.1861 49 1 0.9494 -5.0589 -0.5708 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078894195.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:07 Heat of formation + Delta-G solvation = 3.269167 kcal Electronic energy + Delta-G solvation = -30266.976039 eV Core-core repulsion = 26037.419199 eV Total energy + Delta-G solvation = -4229.556840 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 349.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.19943 -40.20963 -38.93361 -36.87605 -35.68521 -34.86720 -33.34269 -32.89905 -32.78611 -30.46563 -29.61770 -27.72137 -26.82484 -25.73070 -24.95853 -24.48941 -23.64807 -22.86844 -22.17702 -20.71453 -18.82677 -18.39939 -17.59658 -17.11578 -16.87902 -16.76206 -16.58042 -16.24199 -15.73008 -15.56581 -15.36587 -15.26604 -14.81229 -14.46847 -14.05898 -14.02245 -13.89440 -13.76680 -13.66349 -13.44898 -12.96820 -12.70191 -12.38907 -12.27227 -12.14944 -11.84738 -11.57548 -11.47079 -11.40246 -11.30760 -11.23331 -10.94700 -10.73994 -10.61375 -10.57569 -10.12685 -9.98147 -9.86404 -9.18358 -9.06845 -8.45177 -8.42704 -8.41867 -7.69363 -6.42601 -4.14932 0.53062 0.89615 2.51806 3.22534 3.32817 3.38224 3.40047 3.40310 3.44884 3.62073 3.96771 4.05016 4.31770 4.35618 4.38157 4.43465 4.50540 4.58427 4.70122 4.76760 4.80278 4.88408 4.99803 5.04927 5.10462 5.20646 5.28866 5.32061 5.33120 5.35578 5.36288 5.50423 5.55689 5.58143 5.73829 5.76479 5.81816 5.89998 6.03896 6.51493 6.61030 6.75375 6.80424 6.92359 7.06158 7.12398 7.31684 7.98539 8.19955 8.38141 8.57954 8.73218 8.93827 9.54717 10.94683 Molecular weight = 349.19amu Principal moments of inertia in cm(-1) A = 0.020509 B = 0.001750 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.953123 B =15999.912606 C =16173.532314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.600 5.600 3 C 0.237 3.763 4 C -0.607 4.607 5 H 0.051 0.949 6 C 0.020 3.980 7 N -0.908 5.908 8 Si 1.071 2.929 9 H -0.287 1.287 10 H -0.281 1.281 11 H -0.288 1.288 12 C 0.506 3.494 13 O -0.524 6.524 14 C 0.040 3.960 15 N -0.516 5.516 16 C 0.013 3.987 17 C 0.068 3.932 18 O -0.381 6.381 19 C 0.084 3.916 20 H 0.079 0.921 21 C 0.135 3.865 22 N -0.706 5.706 23 C 0.346 3.654 24 C -0.184 4.184 25 C -0.077 4.077 26 C -0.023 4.023 27 N -0.202 5.202 28 N -0.310 5.310 29 C 0.028 3.972 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.021 0.979 34 H 0.033 0.967 35 H 0.267 0.733 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.036 0.964 39 H 0.111 0.889 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.415 0.585 45 H 0.145 0.855 46 H 0.148 0.852 47 H 0.168 0.832 48 H 0.089 0.911 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.238 -25.877 -2.521 28.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.333 5.333 3 C 0.117 3.883 4 C -0.645 4.645 5 H 0.069 0.931 6 C -0.185 4.185 7 N -0.544 5.544 8 Si 0.899 3.101 9 H -0.214 1.214 10 H -0.206 1.206 11 H -0.215 1.215 12 C 0.291 3.709 13 O -0.400 6.400 14 C -0.091 4.091 15 N -0.241 5.241 16 C -0.115 4.115 17 C -0.008 4.008 18 O -0.301 6.301 19 C 0.025 3.975 20 H 0.097 0.903 21 C 0.010 3.990 22 N -0.339 5.339 23 C 0.104 3.896 24 C -0.218 4.218 25 C -0.106 4.106 26 C -0.192 4.192 27 N -0.043 5.043 28 N -0.162 5.162 29 C -0.101 4.101 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.039 0.961 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.129 0.871 40 H 0.083 0.917 41 H 0.118 0.882 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.252 0.748 45 H 0.163 0.837 46 H 0.165 0.835 47 H 0.185 0.815 48 H 0.107 0.893 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.104 -24.981 -1.287 26.294 hybrid contribution -2.848 -0.505 -1.476 3.247 sum -10.952 -25.486 -2.763 27.877 Atomic orbital electron populations 1.21638 0.81319 1.02726 1.00353 1.47974 1.06125 1.07418 1.71796 1.19332 0.91922 0.78834 0.98180 1.22234 1.40834 1.09590 0.91883 0.93062 1.25817 0.93262 0.93315 1.06057 1.70811 1.43967 1.39590 1.00075 0.83508 0.76443 0.76334 0.73802 1.21351 1.20637 1.21469 1.20099 0.88238 0.84627 0.77897 1.90637 1.13623 1.86714 1.49011 1.22036 0.94099 0.90503 1.02468 1.61782 1.25399 1.01353 1.35584 1.22990 0.97023 1.02157 0.89308 1.22693 0.93790 0.82217 1.02141 1.87977 1.65821 1.35937 1.40318 1.22251 0.93499 0.92693 0.89018 0.90295 1.21456 0.90972 0.84699 1.01876 1.44287 1.10210 1.01826 1.77603 1.20076 0.90857 0.87797 0.90837 1.21834 0.95439 0.98309 1.06254 1.22213 1.01565 0.92643 0.94154 1.23996 0.90294 1.01802 1.03127 1.72760 1.18010 1.07745 1.05776 1.73017 1.29631 0.95239 1.18324 1.22666 0.95667 0.89541 1.02218 0.93764 0.92466 0.90636 0.96116 0.94865 0.92275 0.88165 0.92417 0.94592 0.87099 0.91654 0.88169 0.89985 0.90762 0.74834 0.83741 0.83473 0.81491 0.89267 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.24 59.84 0.61 1.85 16 2 N -0.60 -12.22 2.86 -182.96 -0.52 -12.75 16 3 C 0.24 6.03 4.47 -5.20 -0.02 6.01 16 4 C -0.61 -17.16 9.39 -34.44 -0.32 -17.48 16 5 H 0.05 1.46 7.81 -52.48 -0.41 1.05 16 6 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 7 N -0.91 -27.46 13.65 55.43 0.76 -26.70 16 8 Si 1.07 25.40 29.90 -169.99 -5.08 20.31 16 9 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.51 9.96 7.38 -10.98 -0.08 9.88 16 13 O -0.52 -12.54 13.93 5.55 0.08 -12.46 16 14 C 0.04 0.55 4.00 -4.98 -0.02 0.53 16 15 N -0.52 -6.87 4.46 -235.75 -1.05 -7.92 16 16 C 0.01 0.17 5.29 -3.71 -0.02 0.15 16 17 C 0.07 0.78 7.01 37.21 0.26 1.04 16 18 O -0.38 -4.16 10.42 -35.23 -0.37 -4.52 16 19 C 0.08 0.75 2.84 -26.68 -0.08 0.67 16 20 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 21 C 0.14 0.91 4.59 -4.04 -0.02 0.89 16 22 N -0.71 -6.07 5.68 -60.29 -0.34 -6.42 16 23 C 0.35 3.37 7.75 -154.77 -1.20 2.18 16 24 C -0.18 -1.30 9.42 -39.00 -0.37 -1.67 16 25 C -0.08 -0.45 10.20 -39.25 -0.40 -0.85 16 26 C -0.02 -0.17 11.31 -17.36 -0.20 -0.37 16 27 N -0.20 -2.32 11.49 30.57 0.35 -1.97 16 28 N -0.31 -3.79 11.54 31.23 0.36 -3.43 16 29 C 0.03 0.26 4.93 -3.71 -0.02 0.24 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.66 6.44 -51.93 -0.33 0.33 16 32 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 33 H 0.02 0.53 7.94 -51.93 -0.41 0.12 16 34 H 0.03 0.94 7.29 -51.93 -0.38 0.56 16 35 H 0.27 8.00 7.22 -40.82 -0.29 7.70 16 36 H 0.10 1.19 7.30 -51.93 -0.38 0.81 16 37 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 38 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.11 1.81 5.88 -51.93 -0.31 1.51 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.08 0.40 7.97 -51.93 -0.41 -0.02 16 43 H 0.07 0.47 7.96 -51.93 -0.41 0.05 16 44 H 0.41 3.81 8.60 -40.82 -0.35 3.46 16 45 H 0.14 0.65 6.84 -52.49 -0.36 0.29 16 46 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 47 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 48 H 0.09 0.68 8.09 -51.92 -0.42 0.26 16 49 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 399.98 15.07 6.03 6.03 Total: -1.00 -36.77 399.98 -9.25 -46.02 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -7.49 Total: 0.26 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.97 Total: 3.54 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.45 Total: -59.18 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.29 Total: -16.98 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.31 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.77 -9.25 -46.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078894195.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.288 kcal (2) G-P(sol) polarization free energy of solvation -36.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds