Wall clock time and date at job start Tue Mar 31 2020 06:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 119.99927 * 2 1 4 4 C 1.50699 * 109.46740 * 269.99488 * 3 2 1 5 5 H 1.07999 * 120.00213 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99883 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99745 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99782 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47683 * 59.99964 * 8 6 4 10 10 H 1.48506 * 109.46955 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46937 * 299.99450 * 8 6 4 12 12 C 1.34775 * 120.00123 * 179.97438 * 2 1 3 13 13 O 1.21282 * 120.00326 * 180.02562 * 12 2 1 14 14 C 1.50704 * 119.99950 * 0.02562 * 12 2 1 15 15 N 1.46904 * 109.46897 * 173.92451 * 14 12 2 16 16 C 1.47019 * 110.99611 * 170.00645 * 15 14 12 17 17 C 1.53096 * 109.25388 * 182.38636 * 16 15 14 18 18 O 1.43008 * 109.26250 * 303.15259 * 17 16 15 19 19 C 1.43017 * 113.73718 * 58.67542 * 18 17 16 20 20 H 1.08996 * 109.51157 * 61.26369 * 19 18 17 21 21 C 1.53001 * 109.54213 * 181.37305 * 19 18 17 22 22 N 1.46498 * 109.47133 * 299.88369 * 21 19 18 23 23 C 1.39044 * 120.00386 * 179.97438 * 22 21 19 24 24 C 1.39485 * 120.15567 * 0.02562 * 23 22 21 25 25 C 1.38555 * 117.90709 * 179.97438 * 24 23 22 26 26 C 1.38820 * 118.03637 * 0.02562 * 25 24 23 27 27 N 1.31785 * 120.01965 * 359.97438 * 26 25 24 28 28 N 1.28358 * 122.28008 * 359.74877 * 27 26 25 29 29 C 1.47017 * 110.99810 * 293.63910 * 15 14 12 30 30 H 1.08997 * 109.47157 * 270.00299 * 1 2 3 31 31 H 1.09000 * 109.47067 * 30.00568 * 1 2 3 32 32 H 1.09005 * 109.46792 * 150.00572 * 1 2 3 33 33 H 1.08994 * 109.46714 * 29.99287 * 3 2 1 34 34 H 1.08997 * 109.46836 * 149.99578 * 3 2 1 35 35 H 0.97002 * 119.99375 * 180.02562 * 7 6 4 36 36 H 1.08991 * 109.47425 * 53.92194 * 14 12 2 37 37 H 1.09004 * 109.46768 * 293.92060 * 14 12 2 38 38 H 1.08997 * 109.51044 * 302.32782 * 16 15 14 39 39 H 1.09000 * 109.50475 * 62.41402 * 16 15 14 40 40 H 1.09004 * 109.50383 * 63.09583 * 17 16 15 41 41 H 1.09005 * 109.50434 * 183.21399 * 17 16 15 42 42 H 1.08996 * 109.47375 * 59.88953 * 21 19 18 43 43 H 1.09000 * 109.47075 * 179.88679 * 21 19 18 44 44 H 0.97005 * 119.99664 * 0.02562 * 22 21 19 45 45 H 1.08002 * 121.04318 * 359.97438 * 24 23 22 46 46 H 1.08000 * 120.98642 * 180.02562 * 25 24 23 47 47 H 1.08004 * 119.99277 * 179.97438 * 26 25 24 48 48 H 1.08996 * 109.50490 * 57.67768 * 29 15 14 49 49 H 1.09001 * 109.50484 * 297.54725 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1270 2.8773 -1.6728 7 7 3.5551 3.6170 -0.6732 8 14 3.4377 3.4167 -3.4340 9 1 2.1401 3.5951 -4.1335 10 1 4.1804 4.7028 -3.4341 11 1 4.2396 2.3816 -4.1346 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 7 2.3334 -3.5850 -0.1455 16 6 1.6699 -4.8763 0.0866 17 6 2.7036 -6.0008 -0.0164 18 8 3.3398 -5.9411 -1.2958 19 6 3.9967 -4.6974 -1.5546 20 1 4.7818 -4.5395 -0.8153 21 6 4.6121 -4.7254 -2.9552 22 7 5.5871 -5.8156 -3.0384 23 6 6.2798 -6.0399 -4.2230 24 6 6.0493 -5.2286 -5.3339 25 6 6.7655 -5.4933 -6.4901 26 6 7.6671 -6.5488 -6.4719 27 7 7.8219 -7.2648 -5.3764 28 7 7.1657 -7.0220 -4.3003 29 6 2.9760 -3.5596 -1.4675 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8901 -0.5138 33 1 1.6083 2.0284 0.5137 34 1 3.1499 1.1384 0.5139 35 1 4.0319 4.4429 -0.8506 36 1 0.6800 -2.4846 -0.8302 37 1 0.8425 -2.5784 0.9398 38 1 1.2229 -4.8825 1.0807 39 1 0.8926 -5.0259 -0.6628 40 1 3.4511 -5.8809 0.7679 41 1 2.2063 -6.9640 0.0983 42 1 3.8265 -4.8832 -3.6941 43 1 5.1106 -3.7763 -3.1520 44 1 5.7489 -6.3814 -2.2673 45 1 5.3350 -4.4195 -5.2941 46 1 6.6266 -4.8962 -7.3792 47 1 8.2417 -6.7832 -7.3558 48 1 3.4825 -2.6047 -1.6076 49 1 2.2201 -3.6885 -2.2421 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078894198.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:10 Heat of formation + Delta-G solvation = 5.652147 kcal Electronic energy + Delta-G solvation = -30816.400497 eV Core-core repulsion = 26586.946991 eV Total energy + Delta-G solvation = -4229.453506 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 349.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.02124 -40.13399 -38.80591 -36.73126 -35.57757 -34.73651 -33.15891 -32.69691 -32.63606 -30.35419 -29.63828 -27.87817 -26.69991 -25.78966 -24.83341 -24.67785 -23.47194 -22.72509 -21.99887 -20.62550 -18.55556 -18.28444 -17.39608 -16.85442 -16.67488 -16.59908 -16.52601 -16.16148 -15.71987 -15.38419 -15.19613 -15.15522 -14.71721 -14.46418 -14.21530 -14.15118 -13.71702 -13.68823 -13.45754 -13.25527 -12.83130 -12.56513 -12.26399 -12.20994 -11.94589 -11.89290 -11.49602 -11.40926 -11.26615 -11.23784 -11.06771 -10.94333 -10.71149 -10.61238 -10.38817 -10.21814 -9.92253 -9.71342 -9.70200 -8.99298 -8.49975 -8.37041 -8.23848 -7.71185 -6.10686 -4.16102 0.71373 1.07176 2.70329 3.25300 3.28700 3.30967 3.36050 3.40693 3.47760 3.56662 4.05343 4.23377 4.37732 4.50871 4.55260 4.59104 4.64208 4.72697 4.78757 4.89122 4.94333 4.95798 5.06082 5.16839 5.21560 5.24477 5.27911 5.32952 5.41898 5.52962 5.55240 5.56813 5.61230 5.77680 5.79870 5.85152 5.88187 5.94976 6.12029 6.66585 6.72315 6.79855 6.96644 7.03185 7.31961 7.38063 7.46534 7.85178 8.16262 8.34153 8.74283 8.82944 9.03142 9.49134 10.97342 Molecular weight = 349.19amu Principal moments of inertia in cm(-1) A = 0.008336 B = 0.002846 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.170336 B = 9834.919595 C =12691.652180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.604 5.604 3 C 0.247 3.753 4 C -0.528 4.528 5 H 0.055 0.945 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.504 3.496 13 O -0.524 6.524 14 C 0.038 3.962 15 N -0.516 5.516 16 C 0.017 3.983 17 C 0.068 3.932 18 O -0.382 6.382 19 C 0.088 3.912 20 H 0.081 0.919 21 C 0.134 3.866 22 N -0.704 5.704 23 C 0.347 3.653 24 C -0.183 4.183 25 C -0.077 4.077 26 C -0.024 4.024 27 N -0.204 5.204 28 N -0.312 5.312 29 C 0.025 3.975 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.414 0.586 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.167 0.833 48 H 0.111 0.889 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.144 -18.405 -4.720 19.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.337 5.337 3 C 0.127 3.873 4 C -0.567 4.567 5 H 0.073 0.927 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.289 3.711 13 O -0.400 6.400 14 C -0.093 4.093 15 N -0.241 5.241 16 C -0.112 4.112 17 C -0.009 4.009 18 O -0.301 6.301 19 C 0.029 3.971 20 H 0.099 0.901 21 C 0.009 3.991 22 N -0.337 5.337 23 C 0.105 3.895 24 C -0.217 4.217 25 C -0.106 4.106 26 C -0.193 4.193 27 N -0.045 5.045 28 N -0.165 5.165 29 C -0.103 4.103 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.105 0.895 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.250 0.750 45 H 0.164 0.836 46 H 0.165 0.835 47 H 0.184 0.816 48 H 0.129 0.871 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.423 -19.378 -3.660 19.869 hybrid contribution -1.460 1.716 -1.834 2.905 sum -3.883 -17.662 -5.494 18.900 Atomic orbital electron populations 1.21652 0.81563 1.02506 1.00461 1.48187 1.06113 1.07827 1.71598 1.19281 0.92568 0.77944 0.97465 1.21359 1.36736 1.06370 0.92196 0.92658 1.24935 0.95343 0.96383 0.97395 1.69919 1.38145 1.14362 1.30803 0.86571 0.78340 0.77916 0.84649 1.20269 1.21108 1.20215 1.20094 0.88266 0.84628 0.78075 1.90653 1.13548 1.86791 1.49033 1.22087 0.93953 0.90650 1.02627 1.61781 1.30843 1.01366 1.30119 1.22835 0.96431 0.89835 1.02074 1.22637 0.94755 0.97974 0.85572 1.87968 1.71353 1.34895 1.35876 1.22283 0.94710 0.84085 0.96001 0.90128 1.21496 0.90883 0.90282 0.96482 1.44253 1.42318 1.35626 1.11499 1.20069 0.90394 0.91456 0.87572 1.21888 1.04051 1.02547 0.93213 1.22214 0.93518 0.96385 0.98448 1.23964 1.00416 0.95642 0.99294 1.72728 1.14860 1.21344 0.95552 1.72979 1.08012 1.16851 1.18613 1.22791 0.97241 1.01034 0.89261 0.93658 0.90683 0.92706 0.95038 0.93777 0.92588 0.92368 0.88236 0.89465 0.93975 0.91975 0.88321 0.90888 0.89539 0.74966 0.83601 0.83473 0.81565 0.87059 0.94179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 10.27 59.85 0.61 1.82 16 2 N -0.60 -12.09 2.86 -182.95 -0.52 -12.61 16 3 C 0.25 6.23 5.16 -5.19 -0.03 6.20 16 4 C -0.53 -14.41 9.39 -34.44 -0.32 -14.74 16 5 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.50 9.74 7.25 -10.98 -0.08 9.67 16 13 O -0.52 -12.32 14.25 5.56 0.08 -12.24 16 14 C 0.04 0.52 4.18 -4.97 -0.02 0.50 16 15 N -0.52 -6.88 4.42 -235.74 -1.04 -7.92 16 16 C 0.02 0.16 5.65 -3.71 -0.02 0.14 16 17 C 0.07 0.63 7.01 37.21 0.26 0.89 16 18 O -0.38 -4.26 10.22 -35.23 -0.36 -4.62 16 19 C 0.09 1.00 2.89 -26.68 -0.08 0.93 16 20 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 21 C 0.13 1.36 4.62 -4.04 -0.02 1.34 16 22 N -0.70 -7.72 5.62 -60.29 -0.34 -8.06 16 23 C 0.35 4.21 7.75 -154.78 -1.20 3.01 16 24 C -0.18 -1.83 9.42 -39.00 -0.37 -2.20 16 25 C -0.08 -0.65 10.20 -39.25 -0.40 -1.05 16 26 C -0.02 -0.23 11.31 -17.36 -0.20 -0.43 16 27 N -0.20 -2.70 11.49 30.57 0.35 -2.35 16 28 N -0.31 -4.38 11.54 31.23 0.36 -4.02 16 29 C 0.03 0.34 4.58 -3.71 -0.02 0.32 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.14 8.07 -51.93 -0.42 0.73 16 32 H 0.05 0.64 6.28 -51.93 -0.33 0.31 16 33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.06 0.71 7.05 -51.93 -0.37 0.34 16 37 H 0.10 1.14 8.04 -51.93 -0.42 0.72 16 38 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 39 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.69 7.96 -51.93 -0.41 0.28 16 43 H 0.09 0.87 7.97 -51.93 -0.41 0.45 16 44 H 0.41 4.52 8.48 -40.82 -0.35 4.18 16 45 H 0.15 1.20 6.84 -52.49 -0.36 0.84 16 46 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.17 1.05 8.06 -52.48 -0.42 0.62 16 48 H 0.11 1.84 6.10 -51.93 -0.32 1.52 16 49 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 401.10 15.07 6.04 6.04 Total: -1.00 -34.82 401.10 -9.21 -44.03 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.53 Total: 2.88 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -1.97 Total: 8.01 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.46 Total: -60.23 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.28 Total: -16.86 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.82 -9.21 -44.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078894198.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.682 kcal (2) G-P(sol) polarization free energy of solvation -34.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds