Wall clock time and date at job start Tue Mar 31 2020 06:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46492 * 119.99910 * 2 1 4 4 C 1.50707 * 109.47278 * 270.00169 * 3 2 1 5 5 N 1.30106 * 124.95183 * 90.02598 * 4 3 2 6 6 C 1.35781 * 109.64688 * 179.97438 * 5 4 3 7 7 C 1.39739 * 133.60798 * 180.02562 * 6 5 4 8 8 C 1.36608 * 119.88702 * 179.97438 * 7 6 5 9 9 C 1.38769 * 120.66766 * 359.97438 * 8 7 6 10 10 C 1.37852 * 120.45521 * 0.04062 * 9 8 7 11 11 C 1.38837 * 119.68910 * 359.96051 * 10 9 8 12 12 N 1.36036 * 124.94773 * 269.72443 * 4 3 2 13 13 C 1.46503 * 126.35169 * 359.97438 * 12 4 3 14 14 C 1.34779 * 119.99862 * 180.02562 * 2 1 3 15 15 O 1.21548 * 119.99758 * 174.53762 * 14 2 1 16 16 C 1.47890 * 120.00089 * 354.53706 * 14 2 1 17 17 C 1.39912 * 120.02372 * 326.63774 * 16 14 2 18 18 C 1.38335 * 120.35828 * 180.25558 * 17 16 14 19 19 C 1.37747 * 120.41159 * 0.03855 * 18 17 16 20 20 C 1.40757 * 120.04091 * 359.95983 * 19 18 17 21 21 C 1.41426 * 120.18021 * 180.02562 * 20 19 18 22 22 H 1.08000 * 120.00380 * 330.26240 * 21 20 19 23 23 C 1.39939 * 120.00186 * 150.26240 * 21 20 19 24 24 N 1.30827 * 119.99859 * 344.70257 * 23 21 20 25 25 Si 1.86803 * 120.00396 * 164.70867 * 23 21 20 26 26 H 1.48494 * 109.46997 * 59.99486 * 25 23 21 27 27 H 1.48504 * 109.47319 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46396 * 299.99672 * 25 23 21 29 29 C 1.38995 * 120.02165 * 146.90982 * 16 14 2 30 30 H 1.09002 * 109.47374 * 269.53006 * 1 2 3 31 31 H 1.09002 * 109.47398 * 29.52702 * 1 2 3 32 32 H 1.08998 * 109.47447 * 149.52709 * 1 2 3 33 33 H 1.08996 * 109.47278 * 30.00041 * 3 2 1 34 34 H 1.08998 * 109.47551 * 149.99885 * 3 2 1 35 35 H 1.07998 * 120.05383 * 359.97170 * 7 6 5 36 36 H 1.07998 * 119.66059 * 179.97438 * 8 7 6 37 37 H 1.08004 * 119.77159 * 180.02562 * 9 8 7 38 38 H 1.08002 * 120.16006 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.46907 * 89.99653 * 13 12 4 40 40 H 1.08992 * 109.47427 * 210.00675 * 13 12 4 41 41 H 1.09006 * 109.46858 * 330.00612 * 13 12 4 42 42 H 1.07999 * 119.82573 * 0.27673 * 17 16 14 43 43 H 1.07996 * 119.79328 * 179.97438 * 18 17 16 44 44 H 1.07996 * 119.98399 * 179.97438 * 19 18 17 45 45 H 0.96998 * 120.00313 * 180.02562 * 24 23 21 46 46 H 1.07999 * 120.20195 * 359.70542 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 7 1.6495 2.4526 -2.1234 6 6 2.1783 2.6518 -3.3580 7 6 1.7534 3.3589 -4.4859 8 6 2.5268 3.3729 -5.6119 9 6 3.7348 2.6911 -5.6493 10 6 4.1740 1.9866 -4.5488 11 6 3.4013 1.9610 -3.3956 12 7 3.5466 1.3756 -2.1538 13 6 4.6735 0.5521 -1.7086 14 6 2.1389 -1.1672 -0.0005 15 8 3.3502 -1.1696 -0.1007 16 6 1.4044 -2.4451 0.1208 17 6 0.2375 -2.5116 0.8898 18 6 -0.4520 -3.7046 1.0124 19 6 0.0023 -4.8407 0.3798 20 6 1.1744 -4.7932 -0.3982 21 6 1.6432 -5.9578 -1.0494 22 1 1.4491 -6.9306 -0.6224 23 6 2.3586 -5.8497 -2.2473 24 7 2.3417 -4.7280 -2.9203 25 14 3.3376 -7.3071 -2.8854 26 1 2.4237 -8.4546 -3.1156 27 1 4.0004 -6.9375 -4.1619 28 1 4.3675 -7.6873 -1.8854 29 6 1.8761 -3.5823 -0.5244 30 1 -0.3634 -0.0084 1.0276 31 1 -0.3634 0.8942 -0.5065 32 1 -0.3634 -0.8857 -0.5211 33 1 1.6084 2.0283 0.5138 34 1 3.1499 1.1384 0.5138 35 1 0.8151 3.8933 -4.4674 36 1 2.1947 3.9203 -6.4816 37 1 4.3350 2.7122 -6.5470 38 1 5.1147 1.4572 -4.5833 39 1 4.4730 -0.4939 -1.9403 40 1 5.5811 0.8704 -2.2213 41 1 4.8048 0.6670 -0.6326 42 1 -0.1272 -1.6268 1.3902 43 1 -1.3515 -3.7457 1.6086 44 1 -0.5412 -5.7685 0.4805 45 1 2.8373 -4.6531 -3.7508 46 1 2.7763 -3.5354 -1.1193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078917865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:15 Heat of formation + Delta-G solvation = 70.751124 kcal Electronic energy + Delta-G solvation = -30314.481736 eV Core-core repulsion = 26362.867302 eV Total energy + Delta-G solvation = -3951.614434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.153 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.10647 -39.62518 -37.48998 -37.02148 -35.32062 -34.06464 -33.73877 -31.17356 -30.38947 -29.65194 -29.50102 -27.54172 -26.76127 -26.03880 -25.30665 -22.67871 -22.09446 -21.55791 -21.04926 -20.12081 -18.95139 -17.64777 -17.22991 -16.88371 -16.29096 -15.99825 -15.77071 -15.52806 -14.98181 -14.92986 -14.58472 -14.07049 -14.00246 -13.71618 -13.44058 -13.16694 -13.03406 -12.78270 -12.54882 -12.51265 -12.48803 -12.30316 -11.95134 -11.81807 -11.58249 -11.47775 -11.44378 -11.22767 -11.14540 -10.62336 -10.56389 -10.25137 -10.15476 -9.88943 -9.72680 -9.28366 -9.17157 -8.60067 -8.22348 -8.02212 -7.68538 -7.52698 -6.84252 -4.47767 0.95960 1.57438 2.15359 2.61139 2.75619 2.77684 3.03639 3.05352 3.10861 3.45402 3.60856 3.88457 3.93989 4.16063 4.50563 4.56134 4.84679 4.92818 4.99022 5.06217 5.25684 5.41925 5.45125 5.45712 5.46874 5.49612 5.52097 5.68767 5.75082 5.78952 5.90234 6.07362 6.13292 6.17225 6.28571 6.50180 6.51112 6.59305 6.59955 6.69209 6.90992 6.91676 6.95232 7.13401 7.19637 7.30852 7.53225 7.67717 7.75101 7.89734 7.97218 8.09571 8.43057 8.63624 8.75173 8.78189 10.12589 Molecular weight = 349.15amu Principal moments of inertia in cm(-1) A = 0.010164 B = 0.003519 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.282312 B = 7954.526158 C = 9639.740328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.612 5.612 3 C 0.195 3.805 4 C 0.271 3.729 5 N -0.490 5.490 6 C 0.046 3.954 7 C -0.065 4.065 8 C -0.133 4.133 9 C -0.108 4.108 10 C -0.107 4.107 11 C 0.046 3.954 12 N -0.474 5.474 13 C 0.085 3.915 14 C 0.572 3.428 15 O -0.548 6.548 16 C -0.127 4.127 17 C -0.216 4.216 18 C -0.101 4.101 19 C -0.205 4.205 20 C 0.103 3.897 21 C -0.465 4.465 22 H 0.080 0.920 23 C 0.076 3.924 24 N -0.796 5.796 25 Si 0.909 3.091 26 H -0.265 1.265 27 H -0.278 1.278 28 H -0.263 1.263 29 C -0.089 4.089 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.282 0.718 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.810 13.541 -0.820 13.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.346 5.346 3 C 0.069 3.931 4 C 0.004 3.996 5 N -0.211 5.211 6 C -0.074 4.074 7 C -0.085 4.085 8 C -0.153 4.153 9 C -0.128 4.128 10 C -0.127 4.127 11 C -0.064 4.064 12 N -0.162 5.162 13 C -0.056 4.056 14 C 0.365 3.635 15 O -0.426 6.426 16 C -0.130 4.130 17 C -0.236 4.236 18 C -0.120 4.120 19 C -0.225 4.225 20 C 0.100 3.900 21 C -0.495 4.495 22 H 0.099 0.901 23 C -0.142 4.142 24 N -0.421 5.421 25 Si 0.734 3.266 26 H -0.189 1.189 27 H -0.203 1.203 28 H -0.187 1.187 29 C -0.109 4.109 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.119 0.881 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.093 0.907 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.895 13.874 -0.757 14.023 hybrid contribution 1.119 -1.055 -0.783 1.725 sum 3.013 12.819 -1.540 13.258 Atomic orbital electron populations 1.22144 0.78503 1.03900 1.01551 1.47745 1.07575 1.04349 1.74936 1.19769 0.99547 0.86938 0.86828 1.24120 0.83708 0.95041 0.96730 1.70371 1.28433 1.18997 1.03278 1.19075 0.93026 1.01564 0.93707 1.19969 0.99836 0.98272 0.90400 1.20584 0.95291 1.01548 0.97907 1.20822 0.96786 0.97762 0.97427 1.19965 0.99703 1.02190 0.90880 1.18959 0.99037 1.00570 0.87844 1.45215 1.19196 1.41428 1.10331 1.22117 0.85848 0.95864 1.01796 1.19063 0.86993 0.83781 0.73651 1.90619 1.14356 1.87430 1.50214 1.19339 0.97543 0.92124 1.03965 1.20766 0.98154 0.97827 1.06823 1.20486 0.98544 0.93310 0.99618 1.21187 0.98085 0.97203 1.05987 1.17555 0.89571 0.92760 0.90097 1.19515 1.30560 0.94043 1.05370 0.90150 1.25892 0.94818 0.97168 0.96309 1.69766 1.32888 1.26522 1.12954 0.86341 0.80335 0.81520 0.78430 1.18926 1.20316 1.18730 1.21406 0.99441 0.91070 0.98970 0.92281 0.91407 0.89449 0.87109 0.88132 0.85603 0.85614 0.85533 0.86224 0.89213 0.90948 0.88924 0.87768 0.88745 0.88546 0.90665 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 8.82 59.85 0.53 1.70 16 2 N -0.61 -10.04 2.86 -184.06 -0.53 -10.57 16 3 C 0.19 2.72 5.66 -5.19 -0.03 2.69 16 4 C 0.27 4.39 7.44 -154.82 -1.15 3.24 16 5 N -0.49 -8.39 11.27 -8.23 -0.09 -8.48 16 6 C 0.05 0.76 7.23 -84.70 -0.61 0.14 16 7 C -0.07 -0.89 10.05 -39.61 -0.40 -1.29 16 8 C -0.13 -1.52 9.96 -39.97 -0.40 -1.92 16 9 C -0.11 -1.24 10.03 -39.53 -0.40 -1.64 16 10 C -0.11 -1.43 10.05 -39.50 -0.40 -1.83 16 11 C 0.05 0.74 6.87 -83.99 -0.58 0.17 16 12 N -0.47 -7.63 3.21 -118.50 -0.38 -8.01 16 13 C 0.09 1.22 9.37 59.85 0.56 1.78 16 14 C 0.57 11.59 7.38 -12.31 -0.09 11.50 16 15 O -0.55 -11.65 12.76 5.32 0.07 -11.59 16 16 C -0.13 -2.84 5.22 -105.04 -0.55 -3.39 16 17 C -0.22 -4.33 7.69 -38.92 -0.30 -4.63 16 18 C -0.10 -2.08 10.01 -39.73 -0.40 -2.47 16 19 C -0.20 -4.73 9.78 -38.81 -0.38 -5.11 16 20 C 0.10 2.64 5.51 -106.87 -0.59 2.05 16 21 C -0.47 -12.03 9.04 -37.73 -0.34 -12.37 16 22 H 0.08 1.98 7.89 -52.49 -0.41 1.56 16 23 C 0.08 1.89 5.15 -17.34 -0.09 1.80 16 24 N -0.80 -20.69 11.17 55.55 0.62 -20.07 16 25 Si 0.91 18.61 29.59 -169.99 -5.03 13.58 16 26 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 27 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 28 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 29 C -0.09 -2.27 8.20 -38.44 -0.32 -2.58 16 30 H 0.06 0.72 6.67 -51.93 -0.35 0.37 16 31 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 32 H 0.09 1.46 6.07 -51.93 -0.32 1.14 16 33 H 0.11 1.23 8.07 -51.93 -0.42 0.81 16 34 H 0.10 1.33 6.36 -51.93 -0.33 0.99 16 35 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.09 1.55 6.97 -51.93 -0.36 1.19 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.09 1.25 6.37 -51.93 -0.33 0.92 16 42 H 0.10 1.76 5.12 -52.49 -0.27 1.49 16 43 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 44 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 45 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 46 H 0.12 3.38 6.37 -52.49 -0.33 3.04 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -30.34 378.39 -11.19 -41.54 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -5.63 Total: 10.06 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -5.92 Total: -12.15 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.38 Total: -47.14 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.07 Total: -11.59 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.34 -11.19 -41.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078917865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.286 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds