Wall clock time and date at job start Tue Mar 31 2020 06:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47405 * 2 1 4 4 N 1.46495 * 109.47498 * 179.97438 * 3 2 1 5 5 C 1.39382 * 120.00286 * 179.97438 * 4 3 2 6 6 C 1.38987 * 119.95008 * 359.72592 * 5 4 3 7 7 C 1.37755 * 120.15474 * 179.75959 * 6 5 4 8 8 C 1.39786 * 120.04850 * 0.51814 * 7 6 5 9 9 C 1.43206 * 120.05067 * 179.71526 * 8 7 6 10 10 N 9.02740 * 126.22260 * 359.97438 * 2 1 3 11 11 C 1.39771 * 119.90186 * 359.74023 * 8 7 6 12 12 C 1.38254 * 119.84577 * 0.02562 * 11 8 7 13 13 N 1.40091 * 120.02549 * 179.97438 * 12 11 8 14 14 C 1.34774 * 120.00157 * 331.56874 * 13 12 11 15 15 O 1.21573 * 119.99610 * 4.45930 * 14 13 12 16 16 C 1.47853 * 120.00172 * 184.46836 * 14 13 12 17 17 C 1.39924 * 120.02925 * 359.71734 * 16 14 13 18 18 C 1.38329 * 120.36278 * 179.76667 * 17 16 14 19 19 C 1.37756 * 120.40859 * 0.51416 * 18 17 16 20 20 C 1.40749 * 120.04146 * 359.74568 * 19 18 17 21 21 C 1.41446 * 120.17618 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99885 * 332.19141 * 21 20 19 23 23 C 1.39941 * 119.99860 * 152.18590 * 21 20 19 24 24 N 1.30826 * 120.00030 * 347.71583 * 23 21 20 25 25 Si 1.86799 * 119.99894 * 167.70988 * 23 21 20 26 26 H 1.48509 * 109.47066 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.46873 * 120.00158 * 25 23 21 28 28 H 1.48500 * 109.47374 * 240.00197 * 25 23 21 29 29 C 1.39016 * 120.02673 * 179.97438 * 16 14 13 30 30 H 1.09003 * 109.47258 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47036 * 299.99737 * 1 2 3 32 32 H 1.09003 * 109.47161 * 60.00092 * 1 2 3 33 33 H 1.09000 * 109.46918 * 239.99720 * 2 1 3 34 34 H 1.09003 * 109.47161 * 119.99908 * 2 1 3 35 35 H 1.09003 * 109.46886 * 300.00076 * 3 2 1 36 36 H 1.09008 * 109.47217 * 59.99740 * 3 2 1 37 37 H 0.97000 * 119.99985 * 0.02562 * 4 3 2 38 38 H 1.08002 * 119.91945 * 0.02562 * 6 5 4 39 39 H 1.08000 * 119.97572 * 180.25331 * 7 6 5 40 40 H 1.08001 * 120.07926 * 180.02562 * 11 8 7 41 41 H 0.96998 * 120.00010 * 151.57048 * 13 12 11 42 42 H 1.08006 * 119.82198 * 0.02562 * 17 16 14 43 43 H 1.07997 * 119.79681 * 180.25820 * 18 17 16 44 44 H 1.07997 * 119.97904 * 179.76373 * 19 18 17 45 45 H 0.96998 * 119.99640 * 179.97438 * 24 23 21 46 46 H 1.08001 * 120.19754 * 359.95267 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2019 2.6495 0.0002 6 6 3.5060 3.8526 -0.0066 7 6 4.1905 5.0480 -0.0020 8 6 5.5883 5.0542 -0.0015 9 6 6.3000 6.2969 -0.0030 10 7 6.8645 7.2826 -0.0033 11 6 6.2905 3.8456 -0.0001 12 6 5.5992 2.6483 0.0002 13 7 6.2991 1.4347 0.0010 14 6 7.5251 1.3635 -0.5542 15 8 8.0575 2.3689 -0.9830 16 6 8.2225 0.0627 -0.6420 17 6 7.6127 -1.0938 -0.1435 18 6 8.2569 -2.3151 -0.2263 19 6 9.5102 -2.4055 -0.7908 20 6 10.1418 -1.2521 -1.2928 21 6 11.4284 -1.3418 -1.8735 22 1 12.1090 -2.1198 -1.5607 23 6 11.8195 -0.4223 -2.8532 24 7 10.9306 0.3631 -3.4052 25 14 13.6106 -0.3162 -3.3728 26 1 14.4085 -1.3049 -2.6039 27 1 13.7233 -0.6110 -4.8239 28 1 14.1239 1.0511 -3.1041 29 6 9.4869 -0.0114 -1.2150 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9562 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.9900 0.6024 0.0006 38 1 2.4260 3.8501 -0.0111 39 1 3.6468 5.9811 -0.0032 40 1 7.3705 3.8470 0.0007 41 1 5.9014 0.6457 0.4012 42 1 6.6319 -1.0333 0.3048 43 1 7.7760 -3.2026 0.1576 44 1 10.0084 -3.3619 -0.8485 45 1 11.2018 1.0007 -4.0840 46 1 9.9628 0.8792 -1.5980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078993873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:11 Heat of formation + Delta-G solvation = 36.825767 kcal Electronic energy + Delta-G solvation = -28953.564188 eV Core-core repulsion = 25000.478640 eV Total energy + Delta-G solvation = -3953.085548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.153 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.62052 -38.86601 -37.21368 -37.09611 -35.88938 -34.54019 -33.76616 -33.26959 -30.85398 -29.86895 -29.56041 -28.93892 -26.23681 -25.42963 -23.88942 -22.75186 -22.44127 -21.42219 -21.01467 -19.72236 -19.02357 -17.95807 -17.31419 -16.54022 -16.01830 -15.94108 -15.84825 -15.18499 -14.80325 -14.79606 -14.34775 -14.00095 -13.95077 -13.78017 -13.64786 -13.45295 -13.31366 -13.22465 -12.80464 -12.62236 -12.57442 -12.40564 -12.37534 -12.00367 -11.73674 -11.58236 -11.40629 -11.31645 -11.24825 -11.16643 -10.82179 -10.57757 -10.30018 -10.12773 -10.05401 -9.80512 -9.33675 -9.11679 -8.43719 -7.79466 -7.60235 -7.31170 -6.83501 -4.51496 0.96546 1.33980 2.05272 2.71897 2.84151 3.01029 3.03936 3.05380 3.08658 3.09955 3.39701 3.67531 3.87766 4.02814 4.13598 4.42576 4.55998 4.57542 4.72114 4.84158 5.00719 5.17285 5.20870 5.23610 5.31392 5.35003 5.48336 5.51004 5.60199 5.71787 5.76894 5.87010 5.87423 6.01430 6.06204 6.11478 6.35628 6.50862 6.59924 6.77412 6.85279 6.89672 7.09822 7.13587 7.25807 7.37988 7.53309 7.59013 7.69534 7.75888 7.89592 8.07210 8.40684 8.63979 8.72422 8.74484 10.10398 Molecular weight = 349.15amu Principal moments of inertia in cm(-1) A = 0.009053 B = 0.002984 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.053806 B = 9382.380534 C =11987.194310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.124 3.876 4 N -0.743 5.743 5 C 0.218 3.782 6 C -0.186 4.186 7 C -0.042 4.042 8 C -0.076 4.076 9 C 0.270 3.730 10 N -0.440 5.440 11 C -0.039 4.039 12 C 0.086 3.914 13 N -0.673 5.673 14 C 0.566 3.434 15 O -0.522 6.522 16 C -0.131 4.131 17 C -0.217 4.217 18 C -0.097 4.097 19 C -0.206 4.206 20 C 0.098 3.902 21 C -0.458 4.458 22 H 0.082 0.918 23 C 0.071 3.929 24 N -0.788 5.788 25 Si 0.912 3.088 26 H -0.260 1.260 27 H -0.273 1.273 28 H -0.270 1.270 29 C -0.082 4.082 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.399 0.601 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.160 0.840 41 H 0.405 0.595 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.285 0.715 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.129 -0.042 6.468 20.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C 0.000 4.000 4 N -0.373 5.373 5 C 0.110 3.890 6 C -0.210 4.210 7 C -0.064 4.064 8 C -0.083 4.083 9 C -0.045 4.045 10 N -0.116 5.116 11 C -0.063 4.063 12 C -0.012 4.012 13 N -0.319 5.319 14 C 0.358 3.642 15 O -0.399 6.399 16 C -0.134 4.134 17 C -0.237 4.237 18 C -0.116 4.116 19 C -0.226 4.226 20 C 0.096 3.904 21 C -0.487 4.487 22 H 0.100 0.900 23 C -0.148 4.148 24 N -0.413 5.413 25 Si 0.737 3.263 26 H -0.184 1.184 27 H -0.199 1.199 28 H -0.195 1.195 29 C -0.103 4.103 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.235 0.765 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.178 0.822 41 H 0.242 0.758 42 H 0.105 0.895 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.096 0.904 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.061 2.337 5.939 19.155 hybrid contribution 0.402 -1.180 -0.229 1.268 sum -17.659 1.157 5.710 18.595 Atomic orbital electron populations 1.21671 0.94529 1.02283 1.02162 1.21728 0.96867 0.95945 1.03129 1.21436 0.79562 0.97565 1.01476 1.44588 1.05633 1.05287 1.81758 1.17761 0.89059 0.87183 0.94952 1.20263 0.99584 0.89839 1.11295 1.20780 0.91679 0.97992 0.95945 1.15669 0.91896 0.86646 1.14046 1.25639 0.93161 0.92713 0.92944 1.81199 1.08296 1.11647 1.10465 1.21423 1.02160 0.88566 0.94139 1.17098 0.88432 0.86760 1.08917 1.43402 1.18742 1.10229 1.59518 1.18995 0.79617 0.90136 0.75426 1.90665 1.65334 1.36825 1.47030 1.19345 0.97252 0.90427 1.06419 1.20286 0.99730 0.93010 1.10674 1.20432 0.95559 0.95696 0.99880 1.21163 0.95755 0.97388 1.08332 1.17624 0.92895 0.90197 0.89727 1.19639 0.99010 1.12194 1.17833 0.90000 1.25965 0.99707 0.93870 0.95228 1.69749 1.35089 1.16578 1.19851 0.86185 0.81946 0.79332 0.78877 1.18367 1.19867 1.19550 1.21718 0.92510 0.99185 0.96839 0.92157 0.92405 0.92370 0.91074 0.91174 0.91906 0.91884 0.76538 0.85008 0.85304 0.82233 0.75790 0.89461 0.88760 0.88455 0.90420 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.16 0.37 -0.30 16 2 C -0.14 -0.75 6.05 -26.74 -0.16 -0.91 16 3 C 0.12 0.78 4.90 -4.05 -0.02 0.76 16 4 N -0.74 -6.45 5.69 -58.47 -0.33 -6.78 16 5 C 0.22 2.40 6.67 -83.59 -0.56 1.84 16 6 C -0.19 -1.77 9.28 -39.48 -0.37 -2.13 16 7 C -0.04 -0.43 9.74 -39.18 -0.38 -0.81 16 8 C -0.08 -1.02 5.74 -106.82 -0.61 -1.63 16 9 C 0.27 4.07 15.32 -22.47 -0.34 3.73 16 10 N -0.44 -7.49 18.54 41.84 0.78 -6.71 16 11 C -0.04 -0.60 8.46 -39.00 -0.33 -0.93 16 12 C 0.09 1.22 6.43 -83.52 -0.54 0.68 16 13 N -0.67 -10.12 5.08 -10.60 -0.05 -10.17 16 14 C 0.57 11.32 7.65 -12.33 -0.09 11.23 16 15 O -0.52 -11.96 13.38 5.30 0.07 -11.89 16 16 C -0.13 -2.86 5.87 -105.04 -0.62 -3.47 16 17 C -0.22 -4.12 9.55 -38.92 -0.37 -4.49 16 18 C -0.10 -1.91 10.01 -39.72 -0.40 -2.31 16 19 C -0.21 -4.62 9.78 -38.81 -0.38 -5.00 16 20 C 0.10 2.47 5.55 -106.87 -0.59 1.88 16 21 C -0.46 -11.61 9.06 -37.72 -0.34 -11.95 16 22 H 0.08 1.98 7.88 -52.49 -0.41 1.56 16 23 C 0.07 1.74 5.23 -17.34 -0.09 1.65 16 24 N -0.79 -20.35 10.85 55.55 0.60 -19.75 16 25 Si 0.91 18.48 29.58 -169.99 -5.03 13.45 16 26 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 27 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 28 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 29 C -0.08 -2.08 8.21 -38.44 -0.32 -2.40 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.39 7.93 -51.93 -0.41 -0.02 16 36 H 0.06 0.35 7.95 -51.92 -0.41 -0.06 16 37 H 0.40 3.37 6.93 -40.82 -0.28 3.08 16 38 H 0.13 0.91 6.70 -52.49 -0.35 0.56 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.16 2.89 5.71 -52.49 -0.30 2.59 16 41 H 0.41 4.98 5.47 -40.82 -0.22 4.76 16 42 H 0.09 1.30 6.39 -52.48 -0.34 0.96 16 43 H 0.09 1.55 8.06 -52.49 -0.42 1.12 16 44 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 45 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 46 H 0.14 3.78 5.78 -52.49 -0.30 3.47 16 LS Contribution 391.75 15.07 5.90 5.90 Total: -1.00 -29.55 391.75 -9.75 -39.31 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -5.55 Total: 11.23 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -6.14 Total: -14.58 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.99 Total: -43.42 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.07 Total: -11.89 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.55 -9.75 -39.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078993873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.131 kcal (2) G-P(sol) polarization free energy of solvation -29.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds