Wall clock time and date at job start Tue Mar 31 2020 06:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38314 * 119.92440 * 2 1 4 4 C 1.38080 * 120.07081 * 180.02562 * 3 2 1 5 5 C 1.38922 * 119.92865 * 359.97438 * 4 3 2 6 6 N 1.39823 * 120.07434 * 179.97438 * 5 4 3 7 7 C 1.46498 * 119.99808 * 7.29516 * 6 5 4 8 8 C 1.50708 * 109.47165 * 262.21201 * 7 6 5 9 9 H 1.08004 * 119.99616 * 354.07796 * 8 7 6 10 10 C 1.37869 * 120.00331 * 174.07955 * 8 7 6 11 11 N 1.31510 * 120.00146 * 181.40529 * 10 8 7 12 12 Si 1.86805 * 119.99784 * 1.40499 * 10 8 7 13 13 H 1.48499 * 109.46950 * 94.10263 * 12 10 8 14 14 H 1.48499 * 109.47093 * 214.10590 * 12 10 8 15 15 H 1.48502 * 109.47020 * 334.10175 * 12 10 8 16 16 C 1.34773 * 120.00077 * 187.29805 * 6 5 4 17 17 O 1.21528 * 119.99822 * 4.94162 * 16 6 5 18 18 C 1.48164 * 120.00125 * 184.93916 * 16 6 5 19 19 C 1.39400 * 119.56721 * 182.23014 * 18 16 6 20 20 C 1.38340 * 119.20374 * 180.22895 * 19 18 16 21 21 C 1.39981 * 118.35766 * 359.51283 * 20 19 18 22 22 C 1.43197 * 120.46688 * 180.23250 * 21 20 19 23 23 N 9.80429 * 147.81451 * 355.89608 * 4 1 2 24 24 C 1.39866 * 119.06175 * 0.24284 * 21 20 19 25 25 C 1.50706 * 119.64211 * 179.97438 * 24 21 20 26 26 N 1.31360 * 120.70694 * 0.02562 * 24 21 20 27 27 C 1.38877 * 119.85279 * 0.25281 * 5 4 3 28 28 C 1.38125 * 119.92477 * 359.54066 * 27 5 4 29 29 C 1.50703 * 119.96078 * 180.18682 * 28 27 5 30 30 H 1.08998 * 109.47069 * 89.99830 * 1 2 3 31 31 H 1.09005 * 109.46862 * 209.99890 * 1 2 3 32 32 H 1.09002 * 109.47232 * 329.99889 * 1 2 3 33 33 H 1.08000 * 119.96409 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.03933 * 179.97438 * 4 3 2 35 35 H 1.09000 * 109.47461 * 22.21028 * 7 6 5 36 36 H 1.08999 * 109.47084 * 142.21371 * 7 6 5 37 37 H 0.97008 * 119.99547 * 179.97438 * 11 10 8 38 38 H 1.07999 * 120.39668 * 0.02562 * 19 18 16 39 39 H 1.08000 * 120.82224 * 179.78023 * 20 19 18 40 40 H 1.08999 * 109.46735 * 85.98072 * 25 24 21 41 41 H 1.09000 * 109.46383 * 205.97750 * 25 24 21 42 42 H 1.08995 * 109.47173 * 325.97442 * 25 24 21 43 43 H 1.08003 * 120.03847 * 179.71988 * 27 5 4 44 44 H 1.09003 * 109.46907 * 270.24823 * 29 28 27 45 45 H 1.08995 * 109.47580 * 30.25054 * 29 28 27 46 46 H 1.08996 * 109.46841 * 150.25283 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2023 -0.0005 5 6 4.2740 0.0001 -0.0005 6 7 5.6722 0.0001 -0.0016 7 6 6.4047 1.2587 0.1584 8 6 6.8216 1.7729 -1.1956 9 1 6.6513 1.1725 -2.0771 10 6 7.4203 3.0096 -1.3089 11 7 7.7590 3.4702 -2.4932 12 14 7.7506 4.0310 0.2199 13 1 9.1343 3.7773 0.6954 14 1 7.5949 5.4718 -0.1043 15 1 6.7849 3.6559 1.2839 16 6 6.3460 -1.1577 -0.1499 17 8 5.7415 -2.1882 -0.3723 18 6 7.8236 -1.1740 -0.0417 19 6 8.5148 -2.3677 -0.2429 20 6 9.8940 -2.3754 -0.1354 21 6 10.5443 -1.1723 0.1632 22 6 11.9708 -1.1276 0.2800 23 7 13.1024 -1.0921 0.3742 24 6 9.7811 -0.0146 0.3459 25 6 10.4677 1.2877 0.6684 26 7 8.4722 -0.0504 0.2405 27 6 3.5781 -1.2017 -0.0053 28 6 2.1968 -1.1982 -0.0004 29 6 1.4409 -2.5019 -0.0014 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.6552 2.1330 -0.0004 34 1 4.1160 2.1386 -0.0010 35 1 5.7629 1.9935 0.6442 36 1 7.2902 1.0883 0.7707 37 1 8.1799 4.3405 -2.5729 38 1 7.9798 -3.2763 -0.4765 39 1 10.4555 -3.2862 -0.2825 40 1 10.7728 1.7763 -0.2569 41 1 9.7803 1.9358 1.2121 42 1 11.3463 1.0926 1.2832 43 1 4.1163 -2.1381 -0.0099 44 1 1.2589 -2.8156 -1.0293 45 1 2.0283 -3.2630 0.5122 46 1 0.4886 -2.3701 0.5122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079000268.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:13 Heat of formation + Delta-G solvation = 92.934919 kcal Electronic energy + Delta-G solvation = -30479.883057 eV Core-core repulsion = 26529.230584 eV Total energy + Delta-G solvation = -3950.652473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.00338 -39.85362 -38.29020 -36.63736 -35.82696 -33.15150 -33.04837 -32.53838 -32.00481 -31.25056 -28.40164 -27.94466 -26.92252 -26.35787 -24.88600 -22.86717 -22.52817 -21.55152 -20.97026 -19.14512 -19.04482 -17.37967 -17.09091 -16.66859 -16.15181 -15.50191 -15.16730 -15.03441 -14.56838 -14.34337 -14.17873 -13.98589 -13.84558 -13.76999 -13.24872 -13.20243 -13.09232 -13.01280 -12.80596 -12.61310 -12.61086 -12.37331 -12.30277 -12.25692 -12.13976 -11.84132 -11.70963 -11.56356 -11.28644 -10.96513 -10.60799 -10.55459 -10.27816 -9.91690 -9.73712 -9.33730 -9.10252 -8.94521 -8.86095 -8.42583 -8.24056 -7.15540 -6.17106 -4.13899 0.24177 1.20248 1.72236 1.90108 2.53542 2.63515 3.13669 3.21442 3.25603 3.27562 3.34262 3.72010 3.95490 4.16595 4.28715 4.33761 4.52557 4.67315 4.98930 5.09797 5.15663 5.16197 5.24861 5.37055 5.44628 5.53959 5.55221 5.66023 5.68643 5.76043 5.81380 5.87749 5.91211 5.94809 6.01856 6.04162 6.14739 6.18841 6.23826 6.41402 6.43580 6.65925 6.85014 6.90277 7.01827 7.09926 7.25357 7.33244 7.47974 7.67405 7.84505 7.89684 8.34884 8.51322 8.85660 9.41505 10.95863 Molecular weight = 349.15amu Principal moments of inertia in cm(-1) A = 0.010990 B = 0.004056 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.228538 B = 6902.263939 C = 8982.004478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.125 4.125 3 C -0.099 4.099 4 C -0.142 4.142 5 C 0.162 3.838 6 N -0.504 5.504 7 C 0.170 3.830 8 C -0.511 4.511 9 H 0.071 0.929 10 C 0.080 3.920 11 N -0.894 5.894 12 Si 0.861 3.139 13 H -0.265 1.265 14 H -0.288 1.288 15 H -0.263 1.263 16 C 0.568 3.432 17 O -0.530 6.530 18 C 0.128 3.872 19 C -0.126 4.126 20 C -0.033 4.033 21 C -0.074 4.074 22 C 0.266 3.734 23 N -0.416 5.416 24 C 0.182 3.818 25 C -0.116 4.116 26 N -0.401 5.401 27 C -0.166 4.166 28 C -0.076 4.076 29 C -0.110 4.110 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.119 0.881 34 H 0.135 0.865 35 H 0.033 0.967 36 H 0.100 0.900 37 H 0.264 0.736 38 H 0.157 0.843 39 H 0.149 0.851 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.174 0.826 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.520 -8.958 7.682 12.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.162 4.162 5 C 0.067 3.933 6 N -0.220 5.220 7 C 0.050 3.950 8 C -0.550 4.550 9 H 0.089 0.911 10 C -0.122 4.122 11 N -0.533 5.533 12 Si 0.688 3.312 13 H -0.191 1.191 14 H -0.214 1.214 15 H -0.188 1.188 16 C 0.357 3.643 17 O -0.410 6.410 18 C -0.011 4.011 19 C -0.147 4.147 20 C -0.061 4.061 21 C -0.080 4.080 22 C -0.050 4.050 23 N -0.091 5.091 24 C 0.039 3.961 25 C -0.173 4.173 26 N -0.112 5.112 27 C -0.186 4.186 28 C -0.077 4.077 29 C -0.166 4.166 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.137 0.863 34 H 0.153 0.847 35 H 0.051 0.949 36 H 0.117 0.883 37 H 0.074 0.926 38 H 0.174 0.826 39 H 0.166 0.834 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.191 0.809 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.403 -8.486 7.745 11.982 hybrid contribution 0.340 0.324 0.149 0.493 sum -3.063 -8.161 7.894 11.761 Atomic orbital electron populations 1.20743 0.92042 1.02002 1.01651 1.19630 0.95429 0.92890 1.04663 1.20716 0.93350 0.97123 1.00620 1.21041 0.94092 0.97485 1.03602 1.18014 0.82386 0.94355 0.98578 1.45634 1.04043 1.09608 1.62754 1.21183 0.93695 0.79569 1.00509 1.21076 1.39230 1.02882 0.91795 0.91067 1.24700 0.95090 0.96991 0.95456 1.69894 1.41635 1.19225 1.22524 0.87158 0.79793 0.80011 0.84246 1.19055 1.21406 1.18772 1.17905 0.85756 0.83161 0.77507 1.90430 1.67103 1.33590 1.49900 1.21274 0.94434 0.89526 0.95869 1.21939 0.93674 0.99557 0.99519 1.21513 0.94067 0.96732 0.93764 1.17032 0.85643 0.96358 1.09006 1.25347 0.92254 0.93644 0.93752 1.81242 1.11712 1.07513 1.08646 1.21658 0.89338 0.94015 0.91065 1.21005 0.99833 0.92951 1.03554 1.68386 1.07528 1.25135 1.10160 1.22332 0.93591 0.99735 1.02908 1.19605 0.93417 0.94417 1.00246 1.20772 0.99505 0.94419 1.01928 0.91894 0.91765 0.92259 0.86330 0.84692 0.94897 0.88306 0.92571 0.82581 0.83352 0.88874 0.89096 0.91051 0.80923 0.91567 0.91857 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.60 36.00 0.35 -0.87 16 2 C -0.13 -1.88 5.88 -104.59 -0.62 -2.49 16 3 C -0.10 -1.61 9.69 -39.61 -0.38 -1.99 16 4 C -0.14 -2.68 9.16 -39.39 -0.36 -3.04 16 5 C 0.16 3.21 6.49 -83.72 -0.54 2.67 16 6 N -0.50 -10.37 2.70 -115.68 -0.31 -10.68 16 7 C 0.17 3.67 3.36 -5.19 -0.02 3.66 16 8 C -0.51 -12.97 8.96 -34.44 -0.31 -13.28 16 9 H 0.07 2.09 8.06 -52.48 -0.42 1.67 16 10 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 11 N -0.89 -25.28 13.96 55.43 0.77 -24.51 16 12 Si 0.86 18.85 27.08 -169.99 -4.60 14.25 16 13 H -0.27 -5.31 5.88 56.52 0.33 -4.98 16 14 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.26 -5.50 6.32 56.52 0.36 -5.15 16 16 C 0.57 10.95 7.50 -12.19 -0.09 10.86 16 17 O -0.53 -10.22 12.78 5.34 0.07 -10.16 16 18 C 0.13 2.18 6.64 -82.95 -0.55 1.63 16 19 C -0.13 -1.65 9.61 -39.11 -0.38 -2.03 16 20 C -0.03 -0.36 9.89 -38.89 -0.38 -0.75 16 21 C -0.07 -0.97 5.75 -106.71 -0.61 -1.58 16 22 C 0.27 3.51 13.89 -22.47 -0.31 3.20 16 23 N -0.42 -6.09 18.54 41.84 0.78 -5.32 16 24 C 0.18 2.80 6.82 -82.18 -0.56 2.24 16 25 C -0.12 -1.70 9.68 36.01 0.35 -1.36 16 26 N -0.40 -7.13 5.13 -5.75 -0.03 -7.16 16 27 C -0.17 -3.03 8.64 -39.39 -0.34 -3.37 16 28 C -0.08 -1.20 5.88 -104.65 -0.62 -1.81 16 29 C -0.11 -1.33 9.60 36.01 0.35 -0.98 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.63 5.94 -51.93 -0.31 0.32 16 32 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 34 H 0.14 2.66 6.19 -52.49 -0.33 2.33 16 35 H 0.03 0.72 4.77 -51.93 -0.25 0.47 16 36 H 0.10 2.06 4.53 -64.39 -0.29 1.77 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.16 1.78 7.63 -52.49 -0.40 1.38 16 39 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.09 1.41 6.28 -51.93 -0.33 1.08 16 42 H 0.07 0.87 7.23 -51.93 -0.38 0.50 16 43 H 0.17 3.23 4.67 -55.50 -0.26 2.97 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 46 H 0.06 0.66 5.94 -51.93 -0.31 0.35 16 LS Contribution 378.28 15.07 5.70 5.70 Total: -1.00 -29.68 378.28 -8.23 -37.90 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.47 Total: 7.28 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -5.13 Total: -7.31 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 1.21 Total: -47.67 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.07 Total: -10.16 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -4.60 Total: 14.25 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.68 -8.23 -37.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079000268.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.837 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds