Wall clock time and date at job start Tue Mar 31 2020 05:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.51317 * 2 1 4 4 C 1.53295 * 109.51243 * 120.10228 * 2 1 3 5 5 N 1.47152 * 108.41793 * 172.20614 * 4 2 1 6 6 C 1.34770 * 120.98045 * 129.45198 * 5 4 2 7 7 O 1.21276 * 120.00437 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99751 * 179.97438 * 6 5 4 9 9 N 1.46905 * 109.47031 * 179.97438 * 8 6 5 10 10 C 1.46898 * 111.00094 * 293.95578 * 9 8 6 11 11 C 1.50699 * 109.47365 * 296.56347 * 10 9 8 12 12 H 1.07998 * 119.99557 * 354.95138 * 11 10 9 13 13 C 1.37870 * 119.99955 * 174.95541 * 11 10 9 14 14 N 1.31513 * 120.00110 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99893 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47088 * 90.00006 * 15 13 11 17 17 H 1.48502 * 109.47222 * 210.00103 * 15 13 11 18 18 H 1.48498 * 109.47115 * 330.00329 * 15 13 11 19 19 C 1.46898 * 110.99949 * 170.00137 * 9 8 6 20 20 C 1.50699 * 109.46999 * 195.99160 * 19 9 8 21 21 C 1.38228 * 119.62213 * 94.69767 * 20 19 9 22 22 C 1.38625 * 119.16384 * 179.97438 * 21 20 19 23 23 C 1.38668 * 118.41760 * 359.97438 * 22 21 20 24 24 C 1.38180 * 119.16715 * 359.97438 * 23 22 21 25 25 N 1.31853 * 119.61879 * 274.41730 * 20 19 9 26 26 C 1.47163 * 118.02617 * 309.52913 * 5 4 2 27 27 C 1.53298 * 108.41543 * 50.46715 * 26 5 4 28 28 H 1.08996 * 109.55326 * 187.77206 * 27 26 5 29 29 C 1.52998 * 109.50806 * 67.64210 * 27 26 5 30 30 O 1.42962 * 109.22154 * 307.71932 * 27 26 5 31 31 H 1.08993 * 109.47466 * 299.90048 * 1 2 3 32 32 H 1.09002 * 109.47054 * 59.90507 * 1 2 3 33 33 H 1.09002 * 109.47366 * 179.89894 * 1 2 3 34 34 H 1.08997 * 109.67963 * 291.95385 * 4 2 1 35 35 H 1.09007 * 109.68418 * 52.46272 * 4 2 1 36 36 H 1.08995 * 109.47667 * 300.00004 * 8 6 5 37 37 H 1.09004 * 109.46860 * 60.00715 * 8 6 5 38 38 H 1.09004 * 109.47314 * 56.56736 * 10 9 8 39 39 H 1.08999 * 109.46917 * 176.56079 * 10 9 8 40 40 H 0.97003 * 120.00010 * 179.97438 * 14 13 11 41 41 H 1.09005 * 109.47330 * 315.99143 * 19 9 8 42 42 H 1.09000 * 109.47020 * 75.98595 * 19 9 8 43 43 H 1.08009 * 120.41501 * 359.97438 * 21 20 19 44 44 H 1.08000 * 120.78961 * 179.97438 * 22 21 20 45 45 H 1.08002 * 120.41449 * 180.02562 * 23 22 21 46 46 H 1.08002 * 119.61603 * 179.97438 * 24 23 22 47 47 H 1.09005 * 109.64768 * 290.74563 * 26 5 4 48 48 H 1.09002 * 109.71537 * 170.22981 * 26 5 4 49 49 H 1.08991 * 109.47640 * 300.25132 * 29 27 26 50 50 H 1.08998 * 109.47317 * 60.25970 * 29 27 26 51 51 H 1.09001 * 109.46917 * 180.25338 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 6 2.0420 -0.7247 1.2500 5 7 3.5011 -0.8765 1.1345 6 6 4.3190 -0.5037 2.1386 7 8 3.8552 -0.0347 3.1563 8 6 5.8102 -0.6697 1.9968 9 7 6.4742 -0.1926 3.2173 10 6 6.2978 1.2566 3.3805 11 6 6.9671 1.9759 2.2379 12 1 7.5418 1.4197 1.5122 13 6 6.8458 3.3441 2.1190 14 7 6.1464 4.0215 3.0031 15 14 7.6760 4.2359 0.7031 16 1 6.7465 4.3025 -0.4531 17 1 8.0365 5.6124 1.1282 18 1 8.9051 3.5019 0.3084 19 6 7.8983 -0.5528 3.2169 20 6 8.4529 -0.4101 4.6109 21 6 8.5047 -1.5134 5.4419 22 6 9.0172 -1.3714 6.7221 23 6 9.4610 -0.1194 7.1202 24 6 9.3787 0.9374 6.2338 25 7 8.8884 0.7647 5.0218 26 6 4.0406 -1.4459 -0.1107 27 6 3.4312 -0.6862 -1.2945 28 1 3.7090 -1.1790 -2.2261 29 6 3.9530 0.7521 -1.3017 30 8 2.0075 -0.6770 -1.1652 31 1 -0.3634 0.5122 0.8908 32 1 -0.3633 0.5153 -0.8891 33 1 -0.3634 -1.0277 -0.0018 34 1 1.8029 -0.1390 2.1376 35 1 1.5752 -1.7071 1.3220 36 1 6.0456 -1.7227 1.8427 37 1 6.1607 -0.0901 1.1428 38 1 5.2341 1.4947 3.3866 39 1 6.7464 1.5734 4.3220 40 1 6.0613 4.9842 2.9196 41 1 8.0121 -1.5847 2.8846 42 1 8.4402 0.1084 2.5407 43 1 8.1503 -2.4740 5.0982 44 1 9.0695 -2.2158 7.3935 45 1 9.8665 0.0276 8.1103 46 1 9.7219 1.9158 6.5364 47 1 3.7755 -2.5012 -0.1761 48 1 5.1252 -1.3383 -0.1245 49 1 3.6764 1.2437 -0.3691 50 1 5.0385 0.7443 -1.4003 51 1 3.5159 1.2930 -2.1410 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079020225.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:18 Heat of formation + Delta-G solvation = -19.771697 kcal Electronic energy + Delta-G solvation = -32252.939448 eV Core-core repulsion = 28153.235303 eV Total energy + Delta-G solvation = -4099.704145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.33634 -39.70382 -38.37091 -36.13026 -34.47638 -33.45627 -32.43742 -31.99024 -31.26116 -30.16859 -28.29804 -27.01865 -26.79830 -25.57868 -24.05800 -23.00521 -22.73871 -22.12921 -20.52490 -19.86947 -18.61970 -17.15776 -16.64209 -16.35856 -16.19432 -15.80278 -15.61484 -15.50397 -15.11993 -14.95513 -14.69657 -14.46156 -14.17838 -13.82309 -13.46174 -13.24745 -13.04147 -12.87437 -12.71950 -12.47983 -12.34446 -12.25428 -12.17079 -11.95468 -11.80567 -11.45503 -11.32658 -11.20174 -11.13527 -11.00148 -10.80891 -10.70848 -10.44540 -10.23473 -9.99633 -9.89286 -9.55572 -9.39628 -9.06853 -8.74519 -8.55224 -8.30933 -8.15591 -7.16837 -5.88544 -3.94896 1.56050 1.74959 3.11791 3.27456 3.30161 3.38474 3.39811 3.69192 4.23543 4.48591 4.67857 4.75057 4.83722 4.99415 5.00992 5.07509 5.11972 5.19188 5.25324 5.30138 5.35827 5.37869 5.42633 5.47382 5.56058 5.56497 5.58750 5.70349 5.74797 5.79882 5.88904 5.93590 5.95231 6.00760 6.03830 6.10215 6.13325 6.23081 6.39369 6.41506 6.54384 6.67064 6.69937 7.14481 7.18874 7.31741 7.66611 7.74212 8.03094 8.13539 8.33420 8.42703 8.64686 8.80271 9.13223 9.68015 11.17546 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.003847 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.967642 B = 7276.344559 C = 8904.432703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.068 3.932 3 H 0.070 0.930 4 C 0.089 3.911 5 N -0.625 5.625 6 C 0.527 3.473 7 O -0.508 6.508 8 C 0.047 3.953 9 N -0.520 5.520 10 C 0.181 3.819 11 C -0.537 4.537 12 H 0.051 0.949 13 C 0.070 3.930 14 N -0.885 5.885 15 Si 0.880 3.120 16 H -0.284 1.284 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.101 3.899 20 C 0.159 3.841 21 C -0.164 4.164 22 C -0.085 4.085 23 C -0.189 4.189 24 C 0.099 3.901 25 N -0.448 5.448 26 C 0.082 3.918 27 C 0.076 3.924 28 H 0.110 0.890 29 C -0.186 4.186 30 O -0.376 6.376 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.040 0.960 40 H 0.259 0.741 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.149 0.851 47 H 0.072 0.928 48 H 0.095 0.905 49 H 0.069 0.931 50 H 0.071 0.929 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.279 -13.292 -3.827 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.010 3.990 3 H 0.088 0.912 4 C -0.034 4.034 5 N -0.363 5.363 6 C 0.316 3.684 7 O -0.380 6.380 8 C -0.084 4.084 9 N -0.244 5.244 10 C 0.056 3.944 11 C -0.577 4.577 12 H 0.069 0.931 13 C -0.133 4.133 14 N -0.524 5.524 15 Si 0.708 3.292 16 H -0.210 1.210 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.028 4.028 20 C 0.021 3.979 21 C -0.185 4.185 22 C -0.111 4.111 23 C -0.209 4.209 24 C -0.059 4.059 25 N -0.157 5.157 26 C -0.042 4.042 27 C 0.017 3.983 28 H 0.128 0.872 29 C -0.243 4.243 30 O -0.295 6.295 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.166 0.834 47 H 0.090 0.910 48 H 0.113 0.887 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.958 -12.438 -3.472 13.248 hybrid contribution 1.143 0.514 -0.701 1.436 sum -1.815 -11.924 -4.173 12.763 Atomic orbital electron populations 1.21707 0.92589 1.02840 1.02727 1.22506 0.95096 0.96345 0.85102 0.91243 1.22164 0.80720 1.01111 0.99453 1.48125 1.06218 1.65282 1.16638 1.20695 0.89014 0.76511 0.82195 1.90673 1.76955 1.41894 1.28519 1.21768 0.90893 1.00041 0.95714 1.62372 1.08862 1.20517 1.32694 1.20012 0.98865 0.78608 0.96911 1.21570 1.32194 0.92732 1.11170 0.93128 1.24843 0.95157 0.97540 0.95736 1.69964 1.40281 1.07250 1.34907 0.86803 0.79886 0.79549 0.82956 1.21001 1.21261 1.20044 1.20883 0.90756 0.99598 0.91551 1.21177 0.92441 0.87981 0.96321 1.21906 1.01487 1.00319 0.94763 1.21433 0.96474 0.97332 0.95850 1.22038 1.03470 0.94370 1.01028 1.22793 0.95006 0.98706 0.89392 1.67726 1.07559 1.24308 1.16108 1.22371 1.00019 0.97475 0.84311 1.22563 0.81198 0.96431 0.98088 0.87230 1.22393 1.02274 0.96431 1.03246 1.87957 1.20674 1.77223 1.43634 0.90786 0.91685 0.91817 0.88293 0.91460 0.90266 0.90825 0.92856 0.94199 0.93144 0.91580 0.91191 0.85423 0.85654 0.85645 0.83378 0.91008 0.88674 0.91246 0.91018 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.57 37.16 0.36 -1.10 16 2 C 0.07 0.88 3.01 -26.58 -0.08 0.80 16 3 H 0.07 1.03 6.26 -51.93 -0.32 0.70 16 4 C 0.09 1.26 5.93 -3.53 -0.02 1.24 16 5 N -0.62 -9.67 2.54 -172.26 -0.44 -10.11 16 6 C 0.53 10.27 7.41 -10.99 -0.08 10.19 16 7 O -0.51 -12.15 13.80 5.56 0.08 -12.07 16 8 C 0.05 0.87 3.64 -4.97 -0.02 0.85 16 9 N -0.52 -11.24 4.39 -238.96 -1.05 -12.29 16 10 C 0.18 4.84 4.58 -4.98 -0.02 4.81 16 11 C -0.54 -14.65 7.34 -34.44 -0.25 -14.90 16 12 H 0.05 1.33 5.95 -52.49 -0.31 1.02 16 13 C 0.07 1.98 5.46 -17.82 -0.10 1.89 16 14 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 15 Si 0.88 21.62 29.54 -169.99 -5.02 16.60 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.10 1.92 5.12 -4.98 -0.03 1.89 16 20 C 0.16 3.05 5.85 -82.59 -0.48 2.56 16 21 C -0.16 -2.58 9.72 -39.44 -0.38 -2.96 16 22 C -0.08 -1.17 10.18 -39.28 -0.40 -1.57 16 23 C -0.19 -2.67 10.11 -39.44 -0.40 -3.07 16 24 C 0.10 1.70 11.18 -17.55 -0.20 1.51 16 25 N -0.45 -9.39 9.03 -9.48 -0.09 -9.47 16 26 C 0.08 0.98 5.92 -3.53 -0.02 0.96 16 27 C 0.08 0.89 3.93 -26.58 -0.10 0.78 16 28 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 29 C -0.19 -2.54 8.81 37.16 0.33 -2.22 16 30 O -0.38 -4.91 10.23 -35.23 -0.36 -5.27 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.59 7.08 -51.93 -0.37 1.22 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.15 7.74 -51.93 -0.40 0.75 16 37 H 0.07 1.40 6.14 -51.93 -0.32 1.08 16 38 H 0.05 1.62 5.83 -51.93 -0.30 1.32 16 39 H 0.04 1.19 6.57 -51.93 -0.34 0.85 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.07 1.00 7.71 -51.93 -0.40 0.60 16 42 H 0.07 1.49 6.11 -51.93 -0.32 1.17 16 43 H 0.13 1.69 8.06 -52.48 -0.42 1.26 16 44 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 45 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 46 H 0.15 2.24 8.06 -52.49 -0.42 1.82 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.10 1.05 6.05 -51.93 -0.31 0.73 16 49 H 0.07 1.16 6.12 -51.93 -0.32 0.85 16 50 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 51 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 399.11 15.07 6.01 6.01 Total: -1.00 -35.26 399.11 -9.96 -45.22 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.93 Total: 5.87 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.90 Total: 1.67 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.84 Total: -58.03 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.28 Total: -17.34 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.26 -9.96 -45.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079020225.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.446 kcal (2) G-P(sol) polarization free energy of solvation -35.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds