Wall clock time and date at job start Tue Mar 31 2020 05:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.51603 * 2 1 4 4 C 1.53289 * 109.51441 * 239.89592 * 2 1 3 5 5 N 1.47155 * 108.38820 * 187.77893 * 4 2 1 6 6 C 1.34777 * 120.98528 * 230.51513 * 5 4 2 7 7 O 1.21279 * 119.99627 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00042 * 179.97438 * 6 5 4 9 9 N 1.46903 * 109.46865 * 174.33384 * 8 6 5 10 10 C 1.46907 * 110.99745 * 160.73318 * 9 8 6 11 11 C 1.50700 * 109.47268 * 288.22212 * 10 9 8 12 12 H 1.08000 * 120.00005 * 357.83893 * 11 10 9 13 13 C 1.37881 * 119.99890 * 177.84571 * 11 10 9 14 14 N 1.31512 * 119.99545 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99866 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46875 * 89.99827 * 15 13 11 17 17 H 1.48498 * 109.46750 * 209.99783 * 15 13 11 18 18 H 1.48495 * 109.47252 * 329.99772 * 15 13 11 19 19 C 1.46897 * 111.00085 * 284.69029 * 9 8 6 20 20 C 1.50701 * 109.46973 * 170.00302 * 19 9 8 21 21 C 1.38227 * 119.61816 * 94.73101 * 20 19 9 22 22 C 1.38631 * 119.15478 * 179.71188 * 21 20 19 23 23 C 1.38667 * 118.42472 * 0.54244 * 22 21 20 24 24 C 1.38177 * 119.16317 * 359.73587 * 23 22 21 25 25 N 1.31852 * 119.61418 * 274.99804 * 20 19 9 26 26 C 1.47153 * 118.03467 * 50.78619 * 5 4 2 27 27 C 1.53720 * 108.16152 * 309.16148 * 26 5 4 28 28 H 1.08994 * 109.48358 * 172.39762 * 27 26 5 29 29 C 1.52995 * 109.65405 * 292.57360 * 27 26 5 30 30 O 1.42963 * 109.14400 * 52.53742 * 27 26 5 31 31 H 1.09000 * 109.47712 * 180.09832 * 1 2 3 32 32 H 1.08999 * 109.47131 * 300.10525 * 1 2 3 33 33 H 1.09007 * 109.46773 * 60.10297 * 1 2 3 34 34 H 1.08997 * 109.68321 * 68.05681 * 4 2 1 35 35 H 1.08997 * 109.71617 * 307.52067 * 4 2 1 36 36 H 1.08998 * 109.47425 * 54.33419 * 8 6 5 37 37 H 1.09002 * 109.47015 * 294.32860 * 8 6 5 38 38 H 1.08995 * 109.46826 * 48.22588 * 10 9 8 39 39 H 1.08997 * 109.46536 * 168.22006 * 10 9 8 40 40 H 0.97001 * 119.99121 * 180.02562 * 14 13 11 41 41 H 1.08993 * 109.46983 * 50.00039 * 19 9 8 42 42 H 1.08999 * 109.46905 * 290.00108 * 19 9 8 43 43 H 1.07996 * 120.42007 * 359.97160 * 21 20 19 44 44 H 1.08010 * 120.78492 * 180.29958 * 22 21 20 45 45 H 1.07995 * 120.41710 * 179.71438 * 23 22 21 46 46 H 1.08000 * 119.61896 * 179.97438 * 24 23 22 47 47 H 1.08997 * 109.68499 * 68.93751 * 26 5 4 48 48 H 1.09002 * 109.68065 * 189.49480 * 26 5 4 49 49 H 1.08998 * 109.46944 * 179.74104 * 29 27 26 50 50 H 1.09001 * 109.47528 * 299.73768 * 29 27 26 51 51 H 1.08996 * 109.47704 * 59.74232 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7247 -1.2499 5 7 3.5012 -0.8758 -1.1338 6 6 4.3194 -0.5035 -2.1380 7 8 3.8555 -0.0363 -3.1565 8 6 5.8106 -0.6676 -1.9951 9 7 6.4651 -0.3201 -3.2635 10 6 7.8890 -0.0231 -3.0570 11 6 8.0287 1.3006 -2.3503 12 1 7.1496 1.8812 -2.1125 13 6 9.2788 1.7704 -2.0073 14 7 10.3491 1.0631 -2.2965 15 14 9.4520 3.4114 -1.1319 16 1 9.4027 3.1967 0.3367 17 1 10.7500 4.0331 -1.4980 18 1 8.3411 4.3091 -1.5384 19 6 6.2887 -1.3878 -4.2569 20 6 6.7527 -0.9008 -5.6055 21 6 8.0433 -1.1687 -6.0216 22 6 8.4581 -0.7214 -7.2665 23 6 7.5590 -0.0084 -8.0449 24 6 6.2866 0.2262 -7.5598 25 7 5.9244 -0.2195 -6.3725 26 6 4.0402 -1.4513 0.1086 27 6 3.4311 -0.6862 1.2947 28 1 3.7088 -1.1790 2.2263 29 6 3.9530 0.7520 1.3019 30 8 2.0074 -0.6770 1.1652 31 1 -0.3634 -1.0276 0.0018 32 1 -0.3633 0.5155 0.8890 33 1 -0.3633 0.5123 -0.8910 34 1 1.8032 -0.1390 -2.1376 35 1 1.5758 -1.7073 -1.3222 36 1 6.0394 -1.7023 -1.7398 37 1 6.1746 -0.0095 -1.2061 38 1 8.3396 -0.8083 -2.4501 39 1 8.3936 0.0251 -4.0219 40 1 11.2285 1.3935 -2.0548 41 1 5.2353 -1.6620 -4.3123 42 1 6.8757 -2.2579 -3.9631 43 1 8.7185 -1.7231 -5.3868 44 1 9.4592 -0.9202 -7.6199 45 1 7.8497 0.3592 -9.0179 46 1 5.5806 0.7811 -8.1598 47 1 3.7717 -2.5057 0.1716 48 1 5.1251 -1.3468 0.1211 49 1 3.5157 1.2929 2.1411 50 1 5.0385 0.7443 1.4006 51 1 3.6765 1.2436 0.3692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079020229.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:21 Heat of formation + Delta-G solvation = -24.959180 kcal Electronic energy + Delta-G solvation = -31896.459407 eV Core-core repulsion = 27796.530315 eV Total energy + Delta-G solvation = -4099.929091 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.43793 -39.73481 -38.42780 -36.19069 -34.57589 -33.55916 -32.69414 -31.98481 -31.30522 -30.27226 -28.39453 -27.44876 -26.91338 -25.60476 -24.05664 -23.08036 -22.83345 -21.94305 -20.67385 -20.03874 -18.72898 -17.03802 -16.75520 -16.51960 -16.34560 -15.90112 -15.84005 -15.57229 -15.14106 -14.91375 -14.77138 -14.54429 -14.37939 -13.83944 -13.52526 -13.24489 -13.07005 -12.98177 -12.79295 -12.59262 -12.39241 -12.33139 -12.19343 -12.00187 -11.92263 -11.79252 -11.51185 -11.42917 -11.26778 -11.09566 -11.00032 -10.70892 -10.66777 -10.51821 -10.04297 -9.97837 -9.46309 -9.31020 -9.14315 -8.86342 -8.56243 -8.41600 -8.36175 -7.29952 -6.07789 -4.08439 1.55715 1.77250 3.02221 3.09820 3.27040 3.34665 3.40614 3.59085 4.18342 4.40575 4.56449 4.64388 4.78056 4.88454 4.90242 4.97057 5.03022 5.13211 5.20643 5.21368 5.26604 5.27841 5.30242 5.46409 5.47131 5.47841 5.58217 5.62029 5.67468 5.73436 5.80369 5.82897 5.88841 5.93310 5.96399 5.98680 6.09345 6.14529 6.20653 6.27397 6.54898 6.58527 6.60425 7.07595 7.08652 7.17210 7.19706 7.55371 7.76072 7.99064 8.08917 8.45044 8.57310 8.64755 8.99442 9.55793 11.02549 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008462 B = 0.003956 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3307.961649 B = 7076.733430 C = 9483.442736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 H 0.068 0.932 4 C 0.087 3.913 5 N -0.626 5.626 6 C 0.514 3.486 7 O -0.506 6.506 8 C 0.050 3.950 9 N -0.508 5.508 10 C 0.188 3.812 11 C -0.506 4.506 12 H 0.062 0.938 13 C 0.058 3.942 14 N -0.897 5.897 15 Si 0.894 3.106 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.105 3.895 20 C 0.157 3.843 21 C -0.156 4.156 22 C -0.079 4.079 23 C -0.185 4.185 24 C 0.092 3.908 25 N -0.458 5.458 26 C 0.079 3.921 27 C 0.076 3.924 28 H 0.112 0.888 29 C -0.187 4.187 30 O -0.375 6.375 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.115 0.885 38 H -0.005 1.005 39 H 0.041 0.959 40 H 0.261 0.739 41 H 0.082 0.918 42 H 0.036 0.964 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.148 0.852 47 H 0.073 0.927 48 H 0.098 0.902 49 H 0.063 0.937 50 H 0.074 0.926 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.913 -7.151 1.808 14.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.036 4.036 5 N -0.364 5.364 6 C 0.302 3.698 7 O -0.378 6.378 8 C -0.081 4.081 9 N -0.233 5.233 10 C 0.063 3.937 11 C -0.544 4.544 12 H 0.081 0.919 13 C -0.143 4.143 14 N -0.537 5.537 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.023 4.023 20 C 0.018 3.982 21 C -0.176 4.176 22 C -0.105 4.105 23 C -0.205 4.205 24 C -0.065 4.065 25 N -0.167 5.167 26 C -0.044 4.044 27 C 0.017 3.983 28 H 0.130 0.870 29 C -0.244 4.244 30 O -0.294 6.294 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.133 0.867 38 H 0.013 0.987 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.054 0.946 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.145 0.855 46 H 0.166 0.834 47 H 0.092 0.908 48 H 0.116 0.884 49 H 0.082 0.918 50 H 0.093 0.907 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.129 -6.368 1.469 14.665 hybrid contribution 1.889 0.235 0.372 1.939 sum -11.240 -6.133 1.841 12.936 Atomic orbital electron populations 1.21714 0.92561 1.02976 1.02688 1.22489 0.95130 0.96127 0.85190 0.91452 1.22185 0.80782 1.01285 0.99367 1.48227 1.06232 1.64928 1.17001 1.21148 0.89393 0.76917 0.82345 1.90712 1.76886 1.42165 1.28048 1.21874 0.90021 1.00388 0.95809 1.61648 1.17793 1.38141 1.05678 1.19925 0.80241 0.96102 0.97406 1.21135 0.92483 1.04101 1.36701 0.91949 1.24940 0.95763 0.97413 0.96185 1.69945 0.98018 1.38188 1.47530 0.86559 0.77567 0.84076 0.79659 1.20686 1.21226 1.19777 1.20910 1.00897 0.92164 0.88360 1.21002 0.89766 0.92519 0.94912 1.22021 0.96950 1.01937 0.96727 1.21467 0.99342 0.95784 0.93923 1.22022 0.95576 1.01563 1.01318 1.22683 0.94594 0.96886 0.92346 1.67521 1.37158 1.07894 1.04148 1.22507 1.00259 0.97563 0.84111 1.22645 0.81059 0.96313 0.98264 0.87038 1.22399 1.02544 0.96566 1.02881 1.87974 1.20741 1.77198 1.43498 0.91736 0.91647 0.90824 0.88314 0.91381 0.93358 0.86696 0.98739 0.94153 0.92940 0.90011 0.94587 0.85024 0.85345 0.85526 0.83438 0.90841 0.88353 0.91838 0.90726 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.57 37.16 0.36 -0.90 16 2 C 0.07 0.78 3.01 -26.58 -0.08 0.70 16 3 H 0.07 0.83 6.26 -51.93 -0.32 0.50 16 4 C 0.09 1.10 5.92 -3.54 -0.02 1.08 16 5 N -0.63 -8.86 2.53 -172.02 -0.43 -9.30 16 6 C 0.51 9.25 7.26 -10.99 -0.08 9.17 16 7 O -0.51 -11.01 14.95 5.56 0.08 -10.93 16 8 C 0.05 0.94 3.70 -4.98 -0.02 0.92 16 9 N -0.51 -11.18 3.98 -238.97 -0.95 -12.13 16 10 C 0.19 4.70 4.57 -4.97 -0.02 4.68 16 11 C -0.51 -13.90 8.32 -34.44 -0.29 -14.18 16 12 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -25.68 13.29 55.43 0.74 -24.95 16 15 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.11 2.07 4.93 -4.98 -0.02 2.04 16 20 C 0.16 3.12 5.70 -82.59 -0.47 2.65 16 21 C -0.16 -2.82 8.02 -39.44 -0.32 -3.14 16 22 C -0.08 -1.24 10.18 -39.28 -0.40 -1.64 16 23 C -0.18 -2.74 10.11 -39.45 -0.40 -3.14 16 24 C 0.09 1.54 11.18 -17.55 -0.20 1.35 16 25 N -0.46 -9.31 10.27 -9.47 -0.10 -9.41 16 26 C 0.08 0.89 5.91 -3.31 -0.02 0.87 16 27 C 0.08 0.80 3.93 -26.36 -0.10 0.70 16 28 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 29 C -0.19 -2.15 8.82 37.15 0.33 -1.83 16 30 O -0.37 -4.43 10.22 -35.23 -0.36 -4.79 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 1.39 7.08 -51.93 -0.37 1.02 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.78 7.59 -51.93 -0.39 0.39 16 37 H 0.12 2.22 6.85 -51.93 -0.36 1.87 16 38 H -0.01 -0.13 8.05 -51.93 -0.42 -0.55 16 39 H 0.04 1.08 5.53 -51.93 -0.29 0.79 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.08 1.63 6.85 -51.93 -0.36 1.27 16 42 H 0.04 0.64 8.02 -51.93 -0.42 0.22 16 43 H 0.13 2.27 7.99 -52.49 -0.42 1.85 16 44 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 45 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 46 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.10 1.08 6.08 -51.93 -0.32 0.76 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.06 0.88 6.11 -51.93 -0.32 0.56 16 LS Contribution 404.45 15.07 6.09 6.09 Total: -1.00 -34.02 404.45 -9.97 -43.99 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.16 Total: 4.21 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -1.85 Total: 0.86 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.75 Total: -55.78 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.28 Total: -15.72 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.02 -9.97 -43.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079020229.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.028 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds