Wall clock time and date at job start Tue Mar 31 2020 06:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00006 * 2 1 4 4 H 1.48499 * 109.47210 * 240.00027 * 3 2 1 5 5 H 1.48497 * 109.47352 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47137 * 120.00327 * 3 2 1 7 7 C 1.37870 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00228 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47053 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46897 * 180.02562 * 10 9 7 12 12 S 1.81398 * 109.47114 * 179.97438 * 11 10 9 13 13 O 1.42104 * 110.54342 * 68.37649 * 12 11 10 14 14 O 1.42098 * 110.54263 * 291.62000 * 12 11 10 15 15 N 1.65602 * 104.45115 * 179.97438 * 12 11 10 16 16 C 1.46766 * 124.99024 * 89.99807 * 15 12 11 17 17 C 1.53017 * 104.96403 * 180.09371 * 16 15 12 18 18 C 1.53526 * 110.90669 * 239.68944 * 17 16 15 19 19 C 1.55061 * 104.01133 * 215.34739 * 18 17 16 20 20 C 1.54955 * 102.84996 * 37.29922 * 19 18 17 21 21 C 1.53164 * 111.08558 * 120.35948 * 17 16 15 22 22 C 1.50527 * 105.29598 * 359.86625 * 17 16 15 23 23 C 1.38178 * 131.47967 * 180.10318 * 22 17 16 24 24 C 1.38199 * 120.23356 * 179.97438 * 23 22 17 25 25 C 1.38300 * 119.84580 * 0.05443 * 24 23 22 26 26 C 1.37817 * 120.20063 * 359.94825 * 25 24 23 27 27 C 1.38823 * 108.16778 * 0.07277 * 22 17 16 28 28 H 0.97002 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47557 * 59.99909 * 9 7 2 30 30 H 1.09008 * 109.46894 * 299.99775 * 9 7 2 31 31 H 1.09001 * 109.47406 * 59.99725 * 10 9 7 32 32 H 1.08998 * 109.46772 * 299.98969 * 10 9 7 33 33 H 1.08993 * 109.47723 * 59.99135 * 11 10 9 34 34 H 1.09008 * 109.46940 * 299.99460 * 11 10 9 35 35 H 1.09002 * 110.35944 * 61.19243 * 16 15 12 36 36 H 1.09001 * 110.35992 * 298.99856 * 16 15 12 37 37 H 1.08999 * 110.51936 * 333.97419 * 18 17 16 38 38 H 1.08997 * 110.52159 * 96.71291 * 18 17 16 39 39 H 1.09005 * 110.73817 * 278.95817 * 19 18 17 40 40 H 1.08998 * 110.74025 * 155.64104 * 19 18 17 41 41 H 1.08998 * 110.48097 * 203.78098 * 20 19 18 42 42 H 1.08997 * 110.48131 * 81.15145 * 20 19 18 43 43 H 1.09001 * 110.08747 * 240.41214 * 21 17 16 44 44 H 1.09002 * 110.08416 * 1.93174 * 21 17 16 45 45 H 1.08001 * 119.88171 * 359.95829 * 23 22 17 46 46 H 1.08004 * 120.07335 * 180.02562 * 24 23 22 47 47 H 1.08000 * 119.89622 * 179.97438 * 25 24 23 48 48 H 1.07997 * 119.82837 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0033 12 16 2.6589 -6.3659 -0.0037 13 8 3.3548 -6.4275 1.2337 14 8 3.3565 -6.4251 -1.2403 15 7 1.7085 -7.7220 -0.0050 16 6 1.2260 -8.4104 -1.2081 17 6 0.3987 -9.5867 -0.6852 18 6 0.9738 -10.9225 -1.1772 19 6 -0.2779 -11.8090 -1.4049 20 6 -1.3144 -10.8038 -1.9673 21 6 -1.0495 -9.5036 -1.1767 22 6 0.4712 -9.4874 0.8151 23 6 -0.0770 -10.2717 1.8118 24 6 0.1428 -9.9626 3.1407 25 6 0.9135 -8.8635 3.4733 26 6 1.4631 -8.0771 2.4838 27 6 1.2473 -8.3828 1.1387 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5564 -0.8919 30 1 0.6239 -2.5575 0.8881 31 1 2.8712 -3.6048 0.8890 32 1 2.8724 -3.6040 -0.8910 33 1 0.8544 -5.0442 -0.8938 34 1 0.8526 -5.0455 0.8861 35 1 2.0662 -8.7716 -1.8011 36 1 0.6023 -7.7428 -1.8026 37 1 1.5184 -10.7832 -2.1110 38 1 1.6208 -11.3626 -0.4184 39 1 -0.6252 -12.2355 -0.4638 40 1 -0.0679 -12.5940 -2.1314 41 1 -2.3284 -11.1603 -1.7865 42 1 -1.1501 -10.6426 -3.0327 43 1 -1.7297 -9.4365 -0.3277 44 1 -1.1752 -8.6372 -1.8261 45 1 -0.6797 -11.1293 1.5514 46 1 -0.2866 -10.5777 3.9177 47 1 1.0856 -8.6209 4.5115 48 1 2.0643 -7.2205 2.7503 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079047997.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:09 Heat of formation + Delta-G solvation = -59.501698 kcal Electronic energy + Delta-G solvation = -29098.813457 eV Core-core repulsion = 25244.702037 eV Total energy + Delta-G solvation = -3854.111420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.150 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.29847 -37.90149 -37.05298 -36.14472 -35.90673 -34.74364 -32.23719 -31.62604 -29.67693 -29.28622 -29.07898 -27.87897 -24.61166 -23.77545 -23.17200 -22.26360 -21.03213 -20.60845 -19.53272 -19.18314 -17.73281 -16.78984 -16.72807 -16.26465 -15.94588 -15.67110 -15.54247 -14.97561 -14.69879 -14.51006 -14.36989 -14.30239 -13.90643 -13.73605 -12.99138 -12.72740 -12.65950 -12.63969 -12.36173 -12.17466 -12.10677 -11.95922 -11.88136 -11.76606 -11.44377 -11.38830 -11.32935 -11.26115 -11.14694 -10.95225 -10.92471 -10.90349 -10.59238 -10.56574 -10.39855 -10.00741 -9.45772 -9.19657 -8.90704 -8.43294 -8.01497 -6.08265 -4.11837 0.16449 1.25355 1.32407 2.45054 3.30399 3.34407 3.37438 3.59042 3.83384 3.91353 3.95756 4.25210 4.30274 4.39721 4.45551 4.76997 4.81265 4.88313 4.98033 5.02707 5.05167 5.11950 5.13445 5.23795 5.28027 5.33342 5.36918 5.39311 5.49489 5.54014 5.59331 5.63729 5.70497 5.78244 5.79961 5.83283 5.94730 6.04821 6.07703 6.16721 6.21586 6.34187 6.36159 6.46019 6.52830 6.80038 6.93271 7.52609 7.61974 7.89072 8.28845 8.93952 9.53027 11.02892 Molecular weight = 349.15amu Principal moments of inertia in cm(-1) A = 0.015351 B = 0.002660 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.488369 B =10522.135225 C =10920.692326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.032 3.968 10 C -0.105 4.105 11 C -0.602 4.602 12 S 2.594 3.406 13 O -0.945 6.945 14 O -0.948 6.948 15 N -0.943 5.943 16 C 0.122 3.878 17 C -0.024 4.024 18 C -0.110 4.110 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.074 4.074 24 C -0.149 4.149 25 C -0.085 4.085 26 C -0.152 4.152 27 C 0.168 3.832 28 H 0.263 0.737 29 H 0.021 0.979 30 H 0.021 0.979 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.129 0.871 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.587 -26.119 0.205 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.145 4.145 11 C -0.735 4.735 12 S 2.694 3.306 13 O -0.935 6.935 14 O -0.938 6.938 15 N -0.764 5.764 16 C -0.002 4.002 17 C -0.025 4.025 18 C -0.148 4.148 19 C -0.161 4.161 20 C -0.162 4.162 21 C -0.150 4.150 22 C -0.124 4.124 23 C -0.093 4.093 24 C -0.168 4.168 25 C -0.104 4.104 26 C -0.174 4.174 27 C 0.071 3.929 28 H 0.072 0.928 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.147 0.853 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.677 -25.897 0.080 26.035 hybrid contribution -0.238 1.277 -0.008 1.299 sum -2.914 -24.620 0.072 24.792 Atomic orbital electron populations 1.69949 1.06097 1.26951 1.50372 1.25016 0.94896 0.99378 0.95024 0.86604 0.79576 0.82771 0.78790 1.20093 1.21204 1.20086 1.21199 0.93220 0.90836 1.51386 0.92388 1.19058 0.93458 0.90293 0.97825 1.21541 0.99466 0.91399 1.02093 1.30546 1.16114 1.15173 1.11621 1.05805 0.75650 0.74605 0.74529 1.93562 1.69949 1.85388 1.44614 1.93583 1.69606 1.85546 1.45074 1.56640 1.66472 1.42589 1.10720 1.22183 0.98507 0.93465 0.86054 1.20172 0.96040 0.95202 0.91125 1.22444 0.97687 0.93384 1.01240 1.22545 0.95138 0.97472 1.00911 1.22418 0.99113 0.94922 0.99732 1.22288 0.94073 0.98507 1.00108 1.19849 1.01423 0.96882 0.94217 1.20303 0.98853 0.98577 0.91536 1.20978 1.01387 0.98719 0.95760 1.20876 0.96201 0.94376 0.98953 1.21056 1.03514 1.03355 0.89452 1.18186 0.94857 0.92896 0.86935 0.92790 0.96070 0.96030 0.91397 0.91477 0.85209 0.85067 0.89257 0.89714 0.90733 0.90994 0.91429 0.91430 0.91536 0.91382 0.90851 0.90919 0.86125 0.85809 0.85346 0.83808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.81 4.97 -27.88 -0.14 0.67 16 10 C -0.11 -2.13 5.16 -26.73 -0.14 -2.27 16 11 C -0.60 -9.54 6.18 37.16 0.23 -9.31 16 12 S 2.59 40.51 5.56 -107.50 -0.60 39.91 16 13 O -0.94 -16.74 15.28 -57.54 -0.88 -17.62 16 14 O -0.95 -16.87 17.57 -57.54 -1.01 -17.88 16 15 N -0.94 -12.47 3.41 -58.21 -0.20 -12.67 16 16 C 0.12 1.32 6.39 -3.89 -0.02 1.29 16 17 C -0.02 -0.22 0.89 -155.38 -0.14 -0.36 16 18 C -0.11 -0.86 5.88 -25.37 -0.15 -1.01 16 19 C -0.12 -0.77 6.91 -24.61 -0.17 -0.94 16 20 C -0.12 -0.79 6.85 -24.93 -0.17 -0.96 16 21 C -0.11 -0.89 6.16 -25.88 -0.16 -1.05 16 22 C -0.12 -1.30 4.55 -104.51 -0.48 -1.78 16 23 C -0.07 -0.70 9.96 -39.62 -0.39 -1.09 16 24 C -0.15 -1.39 10.06 -39.57 -0.40 -1.79 16 25 C -0.09 -0.91 10.02 -39.71 -0.40 -1.31 16 26 C -0.15 -2.00 9.38 -39.22 -0.37 -2.37 16 27 C 0.17 2.21 6.61 -83.44 -0.55 1.66 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.02 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.13 1.82 8.14 -51.93 -0.42 1.40 16 34 H 0.13 1.91 8.14 -51.92 -0.42 1.49 16 35 H 0.09 0.92 7.38 -51.93 -0.38 0.54 16 36 H 0.08 0.77 7.15 -51.93 -0.37 0.40 16 37 H 0.07 0.54 7.53 -51.93 -0.39 0.15 16 38 H 0.07 0.61 7.83 -51.93 -0.41 0.20 16 39 H 0.07 0.41 7.76 -51.93 -0.40 0.00 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.61 7.66 -51.93 -0.40 0.21 16 44 H 0.07 0.55 7.14 -51.93 -0.37 0.18 16 45 H 0.12 0.88 7.68 -52.49 -0.40 0.47 16 46 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 47 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 48 H 0.14 2.03 6.13 -52.49 -0.32 1.71 16 LS Contribution 392.19 15.07 5.91 5.91 Total: -1.00 -33.88 392.19 -12.56 -46.44 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.64 Total: -0.62 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: -3.86 Total: -34.20 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.54 Total: -38.45 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.89 Total: -35.50 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 40.51 SS G_CDS: -0.60 Total: 39.91 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.88 -12.56 -46.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079047997.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.063 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds