Wall clock time and date at job start Tue Mar 31 2020 05:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00154 * 2 1 4 4 C 1.52996 * 109.46960 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46872 * 180.02562 * 4 3 2 6 6 C 1.35850 * 126.05778 * 125.31680 * 5 4 3 7 7 C 1.35723 * 107.56169 * 180.13494 * 6 5 4 8 8 N 1.40842 * 126.07826 * 179.83614 * 7 6 5 9 9 C 1.34774 * 120.00544 * 179.71378 * 8 7 6 10 10 O 1.21605 * 119.99882 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00155 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00377 * 0.02562 * 11 9 8 13 13 C 1.50704 * 109.47158 * 270.00187 * 12 11 9 14 14 H 1.08004 * 120.00008 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00004 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00307 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00235 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46674 * 60.00066 * 17 15 13 19 19 H 1.48497 * 109.47212 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.46802 * 300.00442 * 17 15 13 21 21 C 1.46506 * 119.99868 * 180.02562 * 11 9 8 22 22 C 1.50703 * 109.47289 * 89.99907 * 21 11 9 23 23 C 1.34508 * 125.78448 * 90.00098 * 22 21 11 24 24 C 1.41394 * 106.83701 * 179.97438 * 23 22 21 25 25 C 1.34513 * 106.83758 * 359.97438 * 24 23 22 26 26 O 1.34295 * 125.78633 * 269.69055 * 22 21 11 27 27 C 1.40240 * 107.84878 * 359.57509 * 7 6 5 28 28 N 1.30837 * 108.34421 * 0.26449 * 27 7 6 29 29 H 1.09010 * 109.46925 * 60.00174 * 1 2 3 30 30 H 1.09000 * 109.47573 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47341 * 300.00474 * 1 2 3 32 32 H 1.09007 * 109.46756 * 59.99821 * 3 2 1 33 33 H 1.08993 * 109.47068 * 299.99700 * 3 2 1 34 34 H 1.08998 * 109.47146 * 60.00450 * 4 3 2 35 35 H 1.09005 * 109.47581 * 300.00210 * 4 3 2 36 36 H 1.08001 * 126.21641 * 359.97273 * 6 5 4 37 37 H 0.97004 * 119.99841 * 359.71412 * 8 7 6 38 38 H 1.08997 * 109.46694 * 29.99578 * 12 11 9 39 39 H 1.08995 * 109.47258 * 149.99854 * 12 11 9 40 40 H 0.96996 * 120.00505 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.47060 * 210.00357 * 21 11 9 42 42 H 1.09004 * 109.47073 * 329.99846 * 21 11 9 43 43 H 1.08001 * 126.58556 * 359.96469 * 23 22 21 44 44 H 1.07997 * 126.57684 * 179.97438 * 24 23 22 45 45 H 1.07998 * 125.78636 * 180.02562 * 25 24 23 46 46 H 1.07995 * 125.82569 * 180.22490 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0362 2.9950 0.8979 7 6 5.3302 4.2732 0.5488 8 7 6.2246 5.1309 1.2181 9 6 6.4298 6.3815 0.7595 10 8 5.8423 6.7695 -0.2320 11 7 7.2861 7.2020 1.3996 12 6 7.9944 6.7345 2.5937 13 6 7.1743 7.0470 3.8189 14 1 6.2211 7.5446 3.7181 15 6 7.6410 6.6977 5.0683 16 7 8.8015 6.0914 5.1910 17 14 6.6248 7.0858 6.5870 18 1 5.3102 6.4018 6.4909 19 1 7.3428 6.6117 7.7974 20 1 6.4139 8.5527 6.6799 21 6 7.5087 8.5616 0.9014 22 6 6.5221 9.5008 1.5462 23 6 6.7120 10.1734 2.6954 24 6 5.5401 10.9305 2.9253 25 6 4.7046 10.6755 1.9024 26 8 5.3065 9.8125 1.0677 27 6 4.5897 4.5861 -0.6003 28 7 3.8741 3.5404 -0.9265 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8574 0.6436 -0.8891 35 1 3.8568 0.6437 0.8909 36 1 5.4450 2.4526 1.7376 37 1 6.6931 4.8215 2.0092 38 1 8.1499 5.6578 2.5256 39 1 8.9590 7.2371 2.6642 40 1 9.1297 5.8453 6.0700 41 1 8.5232 8.8766 1.1457 42 1 7.3734 8.5790 -0.1801 43 1 7.5908 10.1413 3.3224 44 1 5.3521 11.5873 3.7617 45 1 3.7186 11.0964 1.7724 46 1 4.6066 5.5294 -1.1258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079358826.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:26 Heat of formation + Delta-G solvation = 40.309718 kcal Electronic energy + Delta-G solvation = -30549.045925 eV Core-core repulsion = 26250.688100 eV Total energy + Delta-G solvation = -4298.357825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 348.163 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.93826 -41.04631 -39.32083 -38.18992 -35.41816 -34.46250 -33.17645 -32.69653 -32.32907 -30.26533 -29.70786 -28.07364 -27.40098 -26.37469 -25.08073 -23.48637 -23.06948 -21.21459 -21.12677 -20.88840 -19.97899 -18.96456 -17.41033 -17.25844 -16.94382 -16.63516 -16.46846 -16.29950 -15.59074 -15.52666 -15.18746 -14.89262 -14.64011 -14.38455 -14.17642 -13.92427 -13.62473 -13.41414 -13.07797 -12.55388 -12.47354 -12.37009 -12.23314 -12.21280 -12.12810 -11.85802 -11.63426 -11.56442 -11.22185 -11.02614 -10.82621 -10.52966 -10.32486 -10.23879 -9.99661 -9.85452 -9.39877 -9.27864 -9.16147 -8.62323 -8.11081 -7.82500 -7.21313 -6.23429 -4.29729 1.99659 2.22034 2.40825 3.03653 3.12627 3.21885 3.26553 3.31455 3.50869 3.57451 3.61892 4.07129 4.29619 4.52472 4.70270 4.72878 5.00865 5.04038 5.05757 5.07751 5.10123 5.25983 5.28135 5.34069 5.47381 5.49142 5.54832 5.59171 5.79803 5.89255 5.95601 5.98702 6.36159 6.52316 6.56899 6.63675 6.70099 6.73323 7.00099 7.09088 7.11898 7.27345 7.37909 7.63837 7.73758 7.76829 7.94572 7.98338 8.53008 8.81872 9.21953 9.39347 10.82912 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.009717 B = 0.002982 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.856124 B = 9386.135066 C =10578.619236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.050 3.950 4 C 0.150 3.850 5 N -0.381 5.381 6 C 0.002 3.998 7 C 0.045 3.955 8 N -0.654 5.654 9 C 0.715 3.285 10 O -0.602 6.602 11 N -0.608 5.608 12 C 0.238 3.762 13 C -0.531 4.531 14 H 0.063 0.937 15 C 0.067 3.933 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.219 3.781 22 C -0.017 4.017 23 C -0.180 4.180 24 C -0.218 4.218 25 C -0.056 4.056 26 O -0.168 6.168 27 C 0.055 3.945 28 N -0.294 5.294 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.176 0.824 37 H 0.418 0.582 38 H 0.033 0.967 39 H 0.041 0.959 40 H 0.265 0.735 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.148 0.852 44 H 0.139 0.861 45 H 0.192 0.808 46 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.963 -4.687 -6.931 11.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.311 6.311 3 C -0.028 4.028 4 C 0.028 3.972 5 N -0.169 5.169 6 C -0.144 4.144 7 C -0.061 4.061 8 N -0.303 5.303 9 C 0.417 3.583 10 O -0.482 6.482 11 N -0.342 5.342 12 C 0.119 3.881 13 C -0.570 4.570 14 H 0.082 0.918 15 C -0.136 4.136 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.200 1.200 21 C 0.095 3.905 22 C -0.069 4.069 23 C -0.200 4.200 24 C -0.237 4.237 25 C -0.124 4.124 26 O -0.063 6.063 27 C -0.133 4.133 28 N -0.116 5.116 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.193 0.807 37 H 0.257 0.743 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.123 0.877 42 H 0.108 0.892 43 H 0.166 0.834 44 H 0.157 0.843 45 H 0.209 0.791 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -9.068 -5.355 -8.533 13.554 hybrid contribution 0.044 0.746 2.682 2.784 sum -9.024 -4.609 -5.851 11.701 Atomic orbital electron populations 1.22757 0.80264 1.02855 1.00342 1.87765 1.20336 1.27342 1.95612 1.22726 0.93119 0.84926 1.02020 1.21191 0.91959 0.79290 1.04783 1.47967 1.35007 1.11638 1.22259 1.21772 0.98950 0.94984 0.98686 1.17572 1.00086 0.90603 0.97835 1.42136 1.44870 1.11776 1.31526 1.15657 0.80008 0.80156 0.82462 1.90708 1.53267 1.75846 1.28376 1.47411 1.44851 1.11303 1.30618 1.19431 0.92699 0.95269 0.80750 1.21482 1.05668 1.39295 0.90553 0.91840 1.24895 0.94947 0.94792 0.98957 1.69900 1.18656 1.40177 1.24417 0.86621 0.80242 0.79097 0.81967 1.20282 1.21272 1.20016 1.19523 0.94195 0.78549 0.98263 1.22983 0.85909 1.00964 0.97052 1.21574 1.00642 1.00214 0.97559 1.21776 0.95596 1.05294 1.01073 1.23845 0.99390 0.96898 0.92317 1.84065 1.26799 1.50101 1.45358 1.24585 0.94324 0.98534 0.95835 1.77274 1.24160 0.96461 1.13706 0.93812 0.89368 0.93877 0.92630 0.91611 0.89251 0.87984 0.80709 0.74307 0.94953 0.94069 0.92487 0.87700 0.89223 0.83413 0.84291 0.79090 0.77562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.05 10.70 -35.23 -0.38 -4.43 16 3 C 0.05 0.53 6.13 37.16 0.23 0.75 16 4 C 0.15 1.58 6.89 -4.04 -0.03 1.55 16 5 N -0.38 -5.37 3.70 -61.02 -0.23 -5.60 16 6 C 0.00 0.03 11.52 -16.67 -0.19 -0.16 16 7 C 0.05 0.79 6.90 -83.86 -0.58 0.21 16 8 N -0.65 -12.37 5.34 -14.39 -0.08 -12.45 16 9 C 0.72 14.80 8.25 -86.92 -0.72 14.09 16 10 O -0.60 -13.20 13.08 5.27 0.07 -13.13 16 11 N -0.61 -12.20 2.44 -182.18 -0.44 -12.64 16 12 C 0.24 5.21 4.97 -5.19 -0.03 5.18 16 13 C -0.53 -12.99 9.14 -34.44 -0.31 -13.30 16 14 H 0.06 1.67 7.65 -52.48 -0.40 1.27 16 15 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -23.26 13.29 55.43 0.74 -22.52 16 17 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 C 0.22 3.91 5.98 -5.19 -0.03 3.87 16 22 C -0.02 -0.33 6.90 -35.63 -0.25 -0.58 16 23 C -0.18 -3.35 10.40 -39.70 -0.41 -3.76 16 24 C -0.22 -3.68 10.91 -39.70 -0.43 -4.11 16 25 C -0.06 -0.91 12.09 29.42 0.36 -0.56 16 26 O -0.17 -3.25 10.65 5.72 0.06 -3.19 16 27 C 0.06 0.99 10.84 -17.22 -0.19 0.81 16 28 N -0.29 -4.91 12.41 30.70 0.38 -4.52 16 29 H 0.04 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.10 0.86 8.07 -51.93 -0.42 0.44 16 36 H 0.18 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.42 7.80 6.56 -40.82 -0.27 7.53 16 38 H 0.03 0.72 6.36 -51.93 -0.33 0.39 16 39 H 0.04 0.93 7.89 -51.93 -0.41 0.52 16 40 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 41 H 0.10 1.61 7.89 -51.93 -0.41 1.20 16 42 H 0.09 1.54 7.42 -51.93 -0.39 1.15 16 43 H 0.15 2.74 8.06 -52.49 -0.42 2.31 16 44 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 45 H 0.19 2.30 8.06 -52.49 -0.42 1.88 16 46 H 0.21 3.94 5.91 -52.49 -0.31 3.63 16 LS Contribution 397.01 15.07 5.98 5.98 Total: -1.00 -30.75 397.01 -6.78 -37.53 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -6.30 Total: 12.77 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -1.57 Total: 6.96 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.37 Total: -57.74 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.25 Total: -20.74 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.75 -6.78 -37.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079358826.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.838 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds