Wall clock time and date at job start Tue Mar 31 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86810 * 119.99597 * 2 1 4 4 H 1.48494 * 109.46810 * 240.00025 * 3 2 1 5 5 H 1.48496 * 109.46993 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46846 * 120.00223 * 3 2 1 7 7 C 1.38723 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00142 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99830 * 359.97438 * 7 2 1 10 10 C 1.76197 * 99.99889 * 185.00040 * 9 7 2 11 11 C 1.39229 * 120.02250 * 264.72754 * 10 9 7 12 12 C 1.38140 * 120.20534 * 179.79059 * 11 10 9 13 13 C 1.38076 * 120.24589 * 0.46552 * 12 11 10 14 14 C 1.39651 * 120.03865 * 359.78880 * 13 12 11 15 15 C 1.47826 * 120.10384 * 179.97438 * 14 13 12 16 16 O 1.21575 * 120.00092 * 180.02562 * 15 14 13 17 17 N 1.34777 * 120.00272 * 0.02562 * 15 14 13 18 18 C 1.40041 * 120.00356 * 185.53976 * 17 15 14 19 19 C 1.38741 * 120.08009 * 24.81703 * 18 17 15 20 20 C 1.38291 * 119.96531 * 179.77106 * 19 18 17 21 21 Cl 1.73599 * 119.92953 * 180.27662 * 20 19 18 22 22 C 1.38390 * 120.14267 * 0.50636 * 20 19 18 23 23 C 1.38250 * 120.16535 * 359.74820 * 22 20 19 24 24 C 1.38537 * 120.02943 * 359.97438 * 23 22 20 25 25 O 1.36000 * 120.06811 * 179.97438 * 24 23 22 26 26 C 1.38835 * 120.01898 * 85.00305 * 10 9 7 27 27 H 0.96997 * 120.00083 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.89388 * 0.02562 * 11 10 9 29 29 H 1.07995 * 119.87341 * 180.21732 * 12 11 10 30 30 H 1.07995 * 119.98222 * 179.76884 * 13 12 11 31 31 H 0.97002 * 119.99718 * 5.53693 * 17 15 14 32 32 H 1.07999 * 120.01816 * 0.02562 * 19 18 17 33 33 H 1.07999 * 119.91811 * 179.72389 * 22 20 19 34 34 H 1.08002 * 119.98470 * 179.97438 * 23 22 20 35 35 H 0.96700 * 113.99827 * 270.02032 * 25 24 23 36 36 H 1.07995 * 120.12149 * 359.96090 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0100 -1.2013 -0.0005 8 1 3.0900 -1.2013 -0.0010 9 16 1.1290 -2.7273 -0.0005 10 6 2.4732 -3.8565 0.1499 11 6 3.0236 -4.4399 -0.9881 12 6 4.0803 -5.3225 -0.8748 13 6 4.5916 -5.6394 0.3680 14 6 4.0439 -5.0643 1.5166 15 6 4.5898 -5.4031 2.8480 16 8 4.1112 -4.9017 3.8468 17 7 5.6180 -6.2678 2.9546 18 6 6.0596 -6.6783 4.2186 19 6 5.1938 -6.6454 5.3022 20 6 5.6310 -7.0558 6.5484 21 17 4.5447 -7.0210 7.9021 22 6 6.9339 -7.4896 6.7196 23 6 7.8030 -7.5197 5.6449 24 6 7.3708 -7.1157 4.3922 25 8 8.2252 -7.1445 3.3345 26 6 2.9803 -4.1695 1.4039 27 1 -0.4850 0.8400 0.0004 28 1 2.6256 -4.1988 -1.9627 29 1 4.5054 -5.7692 -1.7614 30 1 5.4153 -6.3328 0.4518 31 1 6.0522 -6.6059 2.1558 32 1 4.1777 -6.3034 5.1718 33 1 7.2728 -7.8051 7.6953 34 1 8.8193 -7.8585 5.7819 35 1 8.7236 -6.3254 3.2091 36 1 2.5529 -3.7215 2.2886 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080004026.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:37 Heat of formation + Delta-G solvation = -30.162510 kcal Electronic energy + Delta-G solvation = -24002.765574 eV Core-core repulsion = 20183.136277 eV Total energy + Delta-G solvation = -3819.629297 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 349.033 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12904 -39.52016 -38.00030 -37.42692 -36.23628 -35.00080 -32.55167 -31.56737 -30.67759 -30.28400 -29.13545 -25.61706 -24.56186 -23.26672 -22.72762 -22.08389 -20.53710 -19.18327 -18.39221 -17.84862 -17.31432 -16.38054 -16.27802 -15.65397 -15.40103 -15.25539 -14.99575 -14.89012 -14.47891 -14.15240 -13.85275 -13.54862 -13.51625 -13.05984 -12.92345 -12.59123 -12.46371 -11.84507 -11.74239 -11.33530 -11.25172 -11.22299 -11.15303 -11.10502 -10.76874 -10.67979 -10.04249 -9.89610 -9.19963 -9.11792 -9.00400 -8.76970 -8.35280 -8.11715 -6.77160 -6.32822 -4.07715 0.58861 0.81042 1.11943 1.55419 1.86190 2.71163 2.73744 3.14089 3.19632 3.21202 3.23771 3.39298 3.76348 3.98123 4.18744 4.39949 4.57074 4.74158 4.90671 4.98556 5.01946 5.03868 5.12203 5.40220 5.41843 5.54951 5.62761 5.74292 5.80630 5.85957 5.90200 6.00050 6.13011 6.40196 6.43860 6.52114 6.81486 7.04618 7.14718 7.16728 7.52711 7.91474 8.27642 9.12863 10.73848 Molecular weight = 349.03amu Principal moments of inertia in cm(-1) A = 0.012811 B = 0.002538 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.129930 B =11027.700775 C =11911.360172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.075 0.925 9 S -0.032 6.032 10 C -0.106 4.106 11 C -0.050 4.050 12 C -0.139 4.139 13 C -0.088 4.088 14 C -0.158 4.158 15 C 0.564 3.436 16 O -0.509 6.509 17 N -0.666 5.666 18 C 0.149 3.851 19 C -0.113 4.113 20 C -0.019 4.019 21 Cl -0.062 7.062 22 C -0.119 4.119 23 C -0.110 4.110 24 C 0.073 3.927 25 O -0.493 6.493 26 C -0.014 4.014 27 H 0.271 0.729 28 H 0.134 0.866 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.417 0.583 32 H 0.164 0.836 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.391 0.609 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.224 -16.346 7.544 24.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.670 4.670 8 H 0.093 0.907 9 S 0.203 5.797 10 C -0.217 4.217 11 C -0.071 4.071 12 C -0.159 4.159 13 C -0.107 4.107 14 C -0.163 4.163 15 C 0.355 3.645 16 O -0.384 6.384 17 N -0.311 5.311 18 C 0.053 3.947 19 C -0.134 4.134 20 C -0.047 4.047 21 Cl -0.033 7.033 22 C -0.139 4.139 23 C -0.129 4.129 24 C 0.025 3.975 25 O -0.303 6.303 26 C -0.036 4.036 27 H 0.081 0.919 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.136 0.864 31 H 0.255 0.745 32 H 0.181 0.819 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.247 0.753 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 14.148 -16.550 8.140 23.246 hybrid contribution 2.299 1.497 -0.166 2.748 sum 16.447 -15.054 7.974 23.680 Atomic orbital electron populations 1.69971 1.05909 1.27878 1.46707 1.25001 0.95127 0.99122 0.94242 0.86176 0.79265 0.80870 0.79021 1.19793 1.20686 1.19775 1.22789 0.94833 0.90161 1.59172 0.90650 1.83650 1.03971 0.97074 1.94998 1.22887 1.03013 1.02061 0.93745 1.22022 0.93072 0.93084 0.98944 1.21074 0.98056 0.99819 0.96951 1.21149 0.98759 0.98478 0.92324 1.19678 1.01266 1.04049 0.91332 1.18643 0.78674 0.77296 0.89870 1.90767 1.58696 1.50945 1.38026 1.43438 1.34903 1.45673 1.07102 1.17955 0.92418 0.98118 0.86238 1.21299 1.02009 1.00299 0.89830 1.20753 0.91818 1.02904 0.89194 1.98384 1.63932 1.97039 1.43942 1.20901 0.91580 1.01590 0.99841 1.21122 1.00573 1.00693 0.90525 1.18125 0.87515 1.04159 0.87681 1.84839 1.56634 1.41695 1.47105 1.21976 0.91585 0.91652 0.98407 0.91924 0.84858 0.85604 0.86404 0.74469 0.81903 0.84429 0.84061 0.75265 0.84112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.12 13.22 55.49 0.73 -24.38 16 2 C 0.07 2.05 5.49 -17.46 -0.10 1.96 16 3 Si 0.92 21.14 29.55 -169.99 -5.02 16.11 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.52 -14.44 9.46 30.91 0.29 -14.15 16 8 H 0.08 2.06 7.79 -52.48 -0.41 1.65 16 9 S -0.03 -0.79 21.41 -107.50 -2.30 -3.10 16 10 C -0.11 -2.18 5.45 -38.99 -0.21 -2.39 16 11 C -0.05 -0.85 9.79 -39.25 -0.38 -1.23 16 12 C -0.14 -1.86 10.02 -39.68 -0.40 -2.26 16 13 C -0.09 -1.12 9.54 -39.11 -0.37 -1.49 16 14 C -0.16 -2.49 5.87 -105.00 -0.62 -3.11 16 15 C 0.56 8.53 7.58 -12.34 -0.09 8.44 16 16 O -0.51 -9.25 13.51 5.30 0.07 -9.18 16 17 N -0.67 -7.69 5.23 -10.61 -0.06 -7.75 16 18 C 0.15 1.74 6.44 -83.52 -0.54 1.20 16 19 C -0.11 -1.46 8.50 -39.38 -0.33 -1.79 16 20 C -0.02 -0.21 6.32 -39.51 -0.25 -0.46 16 21 Cl -0.06 -0.68 28.95 -51.86 -1.50 -2.18 16 22 C -0.12 -1.04 9.82 -39.52 -0.39 -1.43 16 23 C -0.11 -0.89 9.98 -39.47 -0.39 -1.28 16 24 C 0.07 0.68 6.72 -39.07 -0.26 0.42 16 25 O -0.49 -3.68 12.92 -19.74 -0.26 -3.94 16 26 C -0.01 -0.28 9.34 -38.91 -0.36 -0.64 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.13 2.15 8.06 -52.49 -0.42 1.72 16 29 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.12 1.04 6.41 -52.49 -0.34 0.70 16 31 H 0.42 3.74 6.40 -40.82 -0.26 3.48 16 32 H 0.16 2.44 5.79 -52.49 -0.30 2.13 16 33 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 35 H 0.39 1.43 9.06 45.56 0.41 1.84 16 36 H 0.14 2.94 7.65 -52.49 -0.40 2.54 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -32.48 350.07 -9.59 -42.07 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -2.12 Total: 5.29 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -4.41 Total: -18.23 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.68 Total: -32.13 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.18 Total: -13.12 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.30 Total: -3.10 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.48 -9.59 -42.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080004026.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.907 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds