Wall clock time and date at job start Tue Mar 31 2020 05:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35859 * 117.00599 * 2 1 4 4 C 1.38857 * 119.92509 * 179.97438 * 3 2 1 5 5 C 1.37853 * 120.08560 * 180.02562 * 4 3 2 6 6 C 1.39557 * 119.91582 * 359.97438 * 5 4 3 7 7 C 1.47922 * 120.08156 * 179.97438 * 6 5 4 8 8 N 1.30381 * 125.73378 * 159.03577 * 7 6 5 9 9 N 1.40162 * 108.03244 * 179.97438 * 8 7 6 10 10 H 0.96998 * 126.24087 * 179.73270 * 9 8 7 11 11 C 1.34879 * 107.51310 * 0.02562 * 9 8 7 12 12 S 1.71197 * 126.17703 * 180.02562 * 11 9 8 13 13 N 1.34790 * 107.64745 * 359.97438 * 11 9 8 14 14 C 1.46498 * 125.86646 * 179.97438 * 13 11 9 15 15 C 1.53000 * 109.47000 * 274.51970 * 14 13 11 16 16 C 1.50695 * 109.47528 * 179.97438 * 15 14 13 17 17 O 1.21292 * 119.99644 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00584 * 179.97438 * 16 15 14 19 19 C 1.37091 * 120.00514 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99854 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00257 * 180.02562 * 19 18 16 22 22 N 1.31418 * 119.99908 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00042 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.47246 * 89.99684 * 23 21 19 25 25 H 1.48499 * 109.47292 * 210.00116 * 23 21 19 26 26 H 1.48500 * 109.47268 * 329.99683 * 23 21 19 27 27 C 1.39553 * 119.83524 * 0.25307 * 6 5 4 28 28 C 1.37857 * 119.91662 * 359.49504 * 27 6 5 29 29 H 1.09000 * 109.46600 * 59.99832 * 1 2 3 30 30 H 1.08995 * 109.46977 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46786 * 299.99834 * 1 2 3 32 32 H 1.08003 * 119.96003 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.04188 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.47160 * 34.51434 * 14 13 11 35 35 H 1.09000 * 109.47337 * 154.51966 * 14 13 11 36 36 H 1.09000 * 109.47363 * 300.00113 * 15 14 13 37 37 H 1.09004 * 109.47530 * 59.99647 * 15 14 13 38 38 H 0.96998 * 119.99680 * 0.02562 * 18 16 15 39 39 H 0.97004 * 119.99683 * 179.97438 * 22 21 19 40 40 H 1.08003 * 120.04112 * 179.72018 * 27 6 5 41 41 H 1.07995 * 119.95765 * 180.24933 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2104 0.0000 4 6 3.4327 1.2812 0.0005 5 6 4.0621 2.5076 0.0011 6 6 3.3037 3.6791 0.0005 7 6 3.9752 4.9971 0.0017 8 7 3.4408 6.1244 -0.3773 9 7 4.4012 7.1335 -0.2229 10 1 4.2836 8.0737 -0.4303 11 6 5.5209 6.5575 0.2606 12 16 6.9906 7.3556 0.6268 13 7 5.2735 5.2404 0.4045 14 6 6.2197 4.2386 0.9019 15 6 7.0871 3.7378 -0.2547 16 6 8.0609 2.7078 0.2570 17 8 8.0614 2.4045 1.4314 18 7 8.9312 2.1237 -0.5902 19 6 9.8174 1.1871 -0.1247 20 1 9.8179 0.9170 0.9210 21 6 10.7150 0.5853 -0.9981 22 7 11.5642 -0.3130 -0.5518 23 14 10.7147 1.0529 -2.8065 24 1 11.6469 2.1882 -3.0244 25 1 11.1530 -0.1104 -3.6188 26 1 9.3439 1.4528 -3.2142 27 6 1.9102 3.6041 0.0048 28 6 1.2878 2.3740 -0.0010 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0190 0.3741 0.0005 33 1 5.1407 2.5618 0.0011 34 1 6.8557 4.6870 1.6653 35 1 5.6699 3.4017 1.3326 36 1 6.4513 3.2895 -1.0181 37 1 7.6370 4.5747 -0.6854 38 1 8.9310 2.3666 -1.5293 39 1 12.1905 -0.7334 -1.1616 40 1 1.3200 4.5086 0.0090 41 1 0.2095 2.3152 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081622656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:31 Heat of formation + Delta-G solvation = 52.935665 kcal Electronic energy + Delta-G solvation = -27596.466158 eV Core-core repulsion = 23605.575611 eV Total energy + Delta-G solvation = -3990.890546 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.97662 -40.55036 -38.72108 -38.00420 -35.87399 -34.10693 -33.24214 -31.82815 -31.63319 -30.98953 -30.09177 -27.79373 -26.16914 -24.67008 -24.02894 -23.12168 -22.67468 -21.15265 -19.50810 -19.29690 -18.69333 -18.43643 -17.14935 -16.71873 -16.60819 -16.47990 -16.19564 -16.10806 -15.60249 -15.18255 -14.87534 -14.54456 -14.16544 -13.81156 -13.75103 -13.38346 -13.11929 -12.96378 -12.74968 -12.58032 -12.35685 -12.12137 -12.07057 -11.95392 -11.39758 -11.34364 -11.22540 -11.10518 -10.99101 -10.83969 -10.64089 -10.03930 -9.66636 -9.52754 -8.74622 -8.67289 -8.27415 -7.74875 -7.71204 -6.38314 -3.90314 0.27863 0.86367 0.91587 1.21829 1.71570 2.22260 2.29633 2.77484 2.98648 3.05037 3.13161 3.25725 3.57148 3.77235 4.02833 4.05290 4.29367 4.36447 4.39368 4.54907 4.64165 4.69699 4.73717 4.86226 5.00108 5.04440 5.07182 5.11426 5.25637 5.35906 5.53044 5.56573 5.74970 5.79517 5.86692 5.89899 5.96198 6.08315 6.16615 6.35807 6.86338 6.87319 7.46771 8.04433 8.47208 8.85025 9.32864 9.67315 10.74025 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.007359 B = 0.003916 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3804.093767 B = 7147.986753 C =10175.116354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.310 6.310 3 C 0.158 3.842 4 C -0.143 4.143 5 C -0.056 4.056 6 C -0.088 4.088 7 C 0.336 3.664 8 N -0.280 5.280 9 N -0.475 5.475 10 H 0.467 0.533 11 C 0.472 3.528 12 S -0.570 6.570 13 N -0.485 5.485 14 C 0.123 3.877 15 C -0.158 4.158 16 C 0.453 3.547 17 O -0.576 6.576 18 N -0.578 5.578 19 C -0.308 4.308 20 H 0.123 0.877 21 C 0.046 3.954 22 N -0.875 5.875 23 Si 0.877 3.123 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.269 1.269 27 C -0.024 4.024 28 C -0.213 4.213 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.128 0.872 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.372 0.628 39 H 0.275 0.725 40 H 0.139 0.861 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.059 5.364 -3.330 26.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.111 3.889 4 C -0.161 4.161 5 C -0.075 4.075 6 C -0.091 4.091 7 C 0.059 3.941 8 N -0.103 5.103 9 N -0.199 5.199 10 H 0.319 0.681 11 C 0.111 3.889 12 S -0.443 6.443 13 N -0.185 5.185 14 C 0.002 3.998 15 C -0.200 4.200 16 C 0.239 3.761 17 O -0.460 6.460 18 N -0.216 5.216 19 C -0.437 4.437 20 H 0.140 0.860 21 C -0.158 4.158 22 N -0.514 5.514 23 Si 0.703 3.297 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.195 1.195 27 C -0.044 4.044 28 C -0.232 4.232 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.166 0.834 33 H 0.169 0.831 34 H 0.146 0.854 35 H 0.135 0.865 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.205 0.795 39 H 0.086 0.914 40 H 0.157 0.843 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -25.756 5.707 -2.722 26.521 hybrid contribution -0.270 0.289 -1.648 1.695 sum -26.026 5.996 -4.370 27.063 Atomic orbital electron populations 1.23156 0.77871 1.04469 1.01612 1.86136 1.21830 1.26586 1.87623 1.19325 0.92430 0.84389 0.92784 1.20479 0.91368 0.98950 1.05311 1.21644 1.01403 0.90399 0.94097 1.17304 0.93035 0.86465 1.12344 1.22571 0.82762 0.94598 0.94147 1.77513 1.13813 0.94213 1.24760 1.46974 1.07485 1.11008 1.54408 0.68147 1.23908 0.93108 0.84673 0.87201 1.93702 1.11450 1.68460 1.70703 1.46539 1.11926 1.07786 1.52242 1.22142 0.90441 0.89367 0.97816 1.21963 0.98833 1.00917 0.98302 1.19181 0.84615 0.85340 0.86992 1.90595 1.72980 1.66079 1.16381 1.42172 1.32414 1.37708 1.09271 1.19452 1.10702 1.15028 0.98484 0.85978 1.25046 0.95988 0.96258 0.98543 1.69620 1.19977 1.25912 1.35859 0.86708 0.78700 0.79312 0.84944 1.19373 1.20040 1.19469 1.20909 0.92088 0.98040 0.93412 1.21181 1.00557 0.91616 1.09815 0.92302 0.87856 0.92264 0.83437 0.83081 0.85412 0.86514 0.89834 0.88061 0.79473 0.91439 0.84337 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.68 10.49 -19.30 -0.20 -2.88 16 3 C 0.16 1.43 6.69 -39.12 -0.26 1.17 16 4 C -0.14 -1.45 9.97 -39.49 -0.39 -1.85 16 5 C -0.06 -0.59 8.45 -39.23 -0.33 -0.92 16 6 C -0.09 -0.88 5.84 -104.95 -0.61 -1.49 16 7 C 0.34 3.81 7.63 -153.96 -1.17 2.64 16 8 N -0.28 -3.05 12.45 32.57 0.41 -2.65 16 9 N -0.47 -5.16 7.38 29.98 0.22 -4.93 16 10 H 0.47 3.73 8.96 -182.55 -1.64 2.10 16 11 C 0.47 6.55 8.13 -86.81 -0.71 5.84 16 12 S -0.57 -10.01 30.45 -107.50 -3.27 -13.28 16 13 N -0.49 -6.29 2.76 -115.20 -0.32 -6.61 16 14 C 0.12 1.75 4.23 -4.04 -0.02 1.73 16 15 C -0.16 -2.45 5.33 -27.89 -0.15 -2.60 16 16 C 0.45 9.52 7.78 -10.99 -0.09 9.44 16 17 O -0.58 -14.12 15.56 5.55 0.09 -14.03 16 18 N -0.58 -13.16 5.09 -10.97 -0.06 -13.22 16 19 C -0.31 -8.39 10.16 -14.94 -0.15 -8.54 16 20 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 21 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 22 N -0.87 -24.89 13.96 55.50 0.77 -24.12 16 23 Si 0.88 18.98 27.74 -169.99 -4.71 14.26 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 26 H -0.27 -5.27 6.52 56.52 0.37 -4.91 16 27 C -0.02 -0.20 9.68 -39.23 -0.38 -0.58 16 28 C -0.21 -1.56 9.02 -39.49 -0.36 -1.91 16 29 H 0.06 0.20 7.65 -51.93 -0.40 -0.20 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 32 H 0.15 1.48 8.06 -52.48 -0.42 1.05 16 33 H 0.15 1.75 3.19 -52.49 -0.17 1.59 16 34 H 0.13 2.08 7.74 -51.93 -0.40 1.67 16 35 H 0.12 1.54 5.62 -51.93 -0.29 1.25 16 36 H 0.08 1.08 6.87 -51.93 -0.36 0.72 16 37 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.37 7.54 5.76 -40.82 -0.24 7.31 16 39 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.14 0.91 7.96 -52.48 -0.42 0.49 16 41 H 0.14 0.64 6.28 -52.49 -0.33 0.31 16 LS Contribution 362.54 15.07 5.46 5.46 Total: -1.00 -34.46 362.54 -10.79 -45.26 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -5.46 Total: 11.59 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -3.72 Total: 5.14 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 1.03 Total: -51.52 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.12 Total: -16.91 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.26 kcal Atomic # 16 Polarization: -10.01 SS G_CDS: -3.27 Total: -13.28 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.46 -10.79 -45.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081622656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.192 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds