Wall clock time and date at job start Tue Mar 31 2020 05:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35859 * 117.00599 * 2 1 4 4 C 1.38857 * 119.92509 * 179.97438 * 3 2 1 5 5 C 1.37853 * 120.08560 * 180.02562 * 4 3 2 6 6 C 1.39557 * 119.91582 * 359.97438 * 5 4 3 7 7 C 1.47922 * 120.08156 * 179.97438 * 6 5 4 8 8 N 1.30381 * 125.73378 * 159.03577 * 7 6 5 9 9 N 1.40162 * 108.03244 * 179.97438 * 8 7 6 10 10 H 0.96998 * 126.24087 * 179.73270 * 9 8 7 11 11 C 1.34879 * 107.51310 * 0.02562 * 9 8 7 12 12 S 1.71197 * 126.17703 * 180.02562 * 11 9 8 13 13 N 1.34790 * 107.64745 * 359.97438 * 11 9 8 14 14 C 1.46498 * 125.86646 * 179.97438 * 13 11 9 15 15 C 1.53000 * 109.47000 * 274.51970 * 14 13 11 16 16 C 1.50695 * 109.47528 * 179.97438 * 15 14 13 17 17 O 1.21292 * 119.99644 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00584 * 179.97438 * 16 15 14 19 19 C 1.37091 * 120.00514 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99854 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00257 * 180.02562 * 19 18 16 22 22 N 1.31418 * 119.99908 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00042 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.47246 * 89.99684 * 23 21 19 25 25 H 1.48499 * 109.47292 * 210.00116 * 23 21 19 26 26 H 1.48500 * 109.47268 * 329.99683 * 23 21 19 27 27 C 1.39553 * 119.83524 * 0.25307 * 6 5 4 28 28 C 1.37857 * 119.91662 * 359.49504 * 27 6 5 29 29 H 1.09000 * 109.46600 * 59.99832 * 1 2 3 30 30 H 1.08995 * 109.46977 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46786 * 299.99834 * 1 2 3 32 32 H 1.08003 * 119.96003 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.04188 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.47160 * 34.51434 * 14 13 11 35 35 H 1.09000 * 109.47337 * 154.51966 * 14 13 11 36 36 H 1.09000 * 109.47363 * 300.00113 * 15 14 13 37 37 H 1.09004 * 109.47530 * 59.99647 * 15 14 13 38 38 H 0.96998 * 119.99680 * 0.02562 * 18 16 15 39 39 H 0.97004 * 119.99683 * 179.97438 * 22 21 19 40 40 H 1.08003 * 120.04112 * 179.72018 * 27 6 5 41 41 H 1.07995 * 119.95765 * 180.24933 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2104 0.0000 4 6 3.4327 1.2812 0.0005 5 6 4.0621 2.5076 0.0011 6 6 3.3037 3.6791 0.0005 7 6 3.9752 4.9971 0.0017 8 7 3.4408 6.1244 -0.3773 9 7 4.4012 7.1335 -0.2229 10 1 4.2836 8.0737 -0.4303 11 6 5.5209 6.5575 0.2606 12 16 6.9906 7.3556 0.6268 13 7 5.2735 5.2404 0.4045 14 6 6.2197 4.2386 0.9019 15 6 7.0871 3.7378 -0.2547 16 6 8.0609 2.7078 0.2570 17 8 8.0614 2.4045 1.4314 18 7 8.9312 2.1237 -0.5902 19 6 9.8174 1.1871 -0.1247 20 1 9.8179 0.9170 0.9210 21 6 10.7150 0.5853 -0.9981 22 7 11.5642 -0.3130 -0.5518 23 14 10.7147 1.0529 -2.8065 24 1 11.6469 2.1882 -3.0244 25 1 11.1530 -0.1104 -3.6188 26 1 9.3439 1.4528 -3.2142 27 6 1.9102 3.6041 0.0048 28 6 1.2878 2.3740 -0.0010 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0190 0.3741 0.0005 33 1 5.1407 2.5618 0.0011 34 1 6.8557 4.6870 1.6653 35 1 5.6699 3.4017 1.3326 36 1 6.4513 3.2895 -1.0181 37 1 7.6370 4.5747 -0.6854 38 1 8.9310 2.3666 -1.5293 39 1 12.1905 -0.7334 -1.1616 40 1 1.3200 4.5086 0.0090 41 1 0.2095 2.3152 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081622656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:31 Heat of formation + Delta-G solvation = 30.135266 kcal Electronic energy + Delta-G solvation = -27597.454857 eV Core-core repulsion = 23605.575611 eV Total energy + Delta-G solvation = -3991.879246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.02875 -41.18819 -40.45963 -38.70652 -37.06288 -36.01484 -34.16687 -33.79704 -32.48400 -32.13808 -30.87039 -28.24020 -27.76492 -25.93128 -25.16859 -24.10632 -23.51362 -22.05122 -21.32960 -20.37934 -20.28232 -19.30243 -18.24641 -18.02974 -17.59520 -17.41141 -17.04073 -16.78912 -16.72829 -16.69723 -16.42006 -15.49296 -15.46099 -14.86234 -14.70083 -14.65691 -14.28840 -14.09836 -13.98458 -13.86029 -13.49656 -13.37235 -13.01983 -12.76228 -12.62954 -12.60267 -12.43033 -12.37197 -12.01686 -11.96841 -11.87051 -11.73907 -11.55094 -10.58067 -10.27756 -10.20625 -9.44519 -9.07680 -8.94581 -8.42233 -6.03087 -0.51769 -0.20445 0.08359 0.19752 0.85621 1.06551 1.29220 1.33310 1.35012 1.42892 1.84861 2.21600 2.25808 2.54439 2.74994 2.85125 3.12373 3.16389 3.38582 3.51719 3.69219 3.72327 3.98773 4.03274 4.03985 4.24746 4.26107 4.40568 4.42377 4.44764 4.62404 4.67124 4.76247 4.86870 4.91370 5.07472 5.12299 5.19890 5.43388 5.49208 5.51382 5.90575 5.93546 6.30924 6.52636 6.83532 7.33856 7.85121 8.74517 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.007359 B = 0.003916 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3804.093767 B = 7147.986753 C =10175.116354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.330 6.330 3 C 0.157 3.843 4 C -0.161 4.161 5 C -0.062 4.062 6 C -0.100 4.100 7 C 0.340 3.660 8 N -0.266 5.266 9 N -0.448 5.448 10 H 0.481 0.519 11 C 0.484 3.516 12 S -0.652 6.652 13 N -0.480 5.480 14 C 0.131 3.869 15 C -0.142 4.142 16 C 0.462 3.538 17 O -0.613 6.613 18 N -0.583 5.583 19 C -0.327 4.327 20 H 0.064 0.936 21 C -0.008 4.008 22 N -0.927 5.927 23 Si 0.955 3.045 24 H -0.262 1.262 25 H -0.272 1.272 26 H -0.231 1.231 27 C -0.014 4.014 28 C -0.202 4.202 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.105 0.895 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.389 0.611 39 H 0.280 0.720 40 H 0.160 0.840 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.091 6.340 -5.937 31.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.243 6.243 3 C 0.110 3.890 4 C -0.180 4.180 5 C -0.082 4.082 6 C -0.104 4.104 7 C 0.065 3.935 8 N -0.088 5.088 9 N -0.172 5.172 10 H 0.335 0.665 11 C 0.118 3.882 12 S -0.526 6.526 13 N -0.178 5.178 14 C 0.010 3.990 15 C -0.183 4.183 16 C 0.249 3.751 17 O -0.499 6.499 18 N -0.222 5.222 19 C -0.456 4.456 20 H 0.082 0.918 21 C -0.208 4.208 22 N -0.568 5.568 23 Si 0.775 3.225 24 H -0.187 1.187 25 H -0.197 1.197 26 H -0.154 1.154 27 C -0.034 4.034 28 C -0.220 4.220 29 H 0.093 0.907 30 H 0.134 0.866 31 H 0.092 0.908 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.124 0.876 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.125 0.875 38 H 0.224 0.776 39 H 0.089 0.911 40 H 0.178 0.822 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -29.859 6.713 -5.340 31.067 hybrid contribution 0.719 -0.138 -0.711 1.020 sum -29.140 6.576 -6.051 30.480 Atomic orbital electron populations 1.23488 0.75648 1.05971 1.03050 1.86121 1.24199 1.26624 1.87348 1.19428 0.92140 0.85324 0.92105 1.20488 0.92417 0.98557 1.06556 1.21456 1.00714 0.90931 0.95124 1.17332 0.93882 0.85294 1.13896 1.22881 0.81712 0.95355 0.93591 1.77602 1.12915 0.93814 1.24499 1.46989 1.06354 1.11808 1.52067 0.66460 1.23314 0.92651 0.84808 0.87464 1.93871 1.14728 1.69653 1.74368 1.46375 1.12474 1.07169 1.51832 1.21915 0.90534 0.89714 0.96833 1.21819 0.97997 0.99171 0.99286 1.20127 0.84031 0.84751 0.86224 1.90584 1.73811 1.67118 1.18385 1.42001 1.32386 1.37546 1.10317 1.19036 1.12956 1.17138 0.96496 0.91758 1.26009 0.94740 0.95557 1.04450 1.69786 1.21145 1.27551 1.38283 0.85507 0.80819 0.79087 0.77090 1.18721 1.19724 1.15403 1.21160 0.91164 0.99195 0.91918 1.21492 1.02059 0.90435 1.08014 0.90697 0.86595 0.90837 0.84380 0.84580 0.87646 0.85430 0.86290 0.87500 0.77555 0.91062 0.82235 0.81105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.33 -5.01 10.49 -91.97 -0.96 -5.98 16 3 C 0.16 2.48 6.69 22.57 0.15 2.63 16 4 C -0.16 -3.13 9.97 22.33 0.22 -2.91 16 5 C -0.06 -1.23 8.45 22.50 0.19 -1.04 16 6 C -0.10 -1.73 5.84 -20.08 -0.12 -1.85 16 7 C 0.34 6.73 7.63 136.31 1.04 7.77 16 8 N -0.27 -4.83 12.45 -50.86 -0.63 -5.46 16 9 N -0.45 -8.53 7.38 -59.05 -0.44 -8.96 16 10 H 0.48 6.37 8.96 -213.28 -1.91 4.46 16 11 C 0.48 12.69 8.13 179.02 1.45 14.14 16 12 S -0.65 -23.10 30.45 -56.49 -1.72 -24.82 16 13 N -0.48 -11.62 2.76 -518.37 -1.43 -13.05 16 14 C 0.13 3.67 4.23 86.38 0.36 4.04 16 15 C -0.14 -4.21 5.33 29.85 0.16 -4.05 16 16 C 0.46 19.63 7.78 87.66 0.68 20.32 16 17 O -0.61 -31.35 15.56 -3.07 -0.05 -31.40 16 18 N -0.58 -26.65 5.09 -307.00 -1.56 -28.21 16 19 C -0.33 -18.59 10.16 84.04 0.85 -17.74 16 20 H 0.06 4.32 7.39 -2.91 -0.02 4.29 16 21 C -0.01 -0.43 5.50 84.92 0.47 0.04 16 22 N -0.93 -54.90 13.96 21.66 0.30 -54.60 16 23 Si 0.95 38.49 27.74 68.60 1.90 40.39 16 24 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 26 H -0.23 -7.80 6.52 99.48 0.65 -7.15 16 27 C -0.01 -0.17 9.68 22.50 0.22 0.04 16 28 C -0.20 -2.14 9.02 22.33 0.20 -1.94 16 29 H 0.07 0.20 7.65 -2.39 -0.02 0.18 16 30 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.22 7.66 -2.39 -0.02 0.20 16 32 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.14 3.01 3.19 -2.91 -0.01 3.00 16 34 H 0.11 3.51 7.74 -2.39 -0.02 3.49 16 35 H 0.13 3.33 5.62 -2.39 -0.01 3.32 16 36 H 0.12 2.77 6.87 -2.39 -0.02 2.75 16 37 H 0.11 3.20 8.14 -2.38 -0.02 3.18 16 38 H 0.39 15.04 5.76 -92.71 -0.53 14.50 16 39 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 40 H 0.16 1.28 7.96 -2.91 -0.02 1.26 16 41 H 0.17 0.67 6.28 -2.91 -0.02 0.65 16 Total: -1.00 -80.58 362.54 1.04 -79.54 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: -1.37 Total: 31.93 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 7.00 Total: 20.63 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -3.76 Total: -110.29 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -1.01 Total: -37.37 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.90 Total: 40.39 kcal Atomic # 16 Polarization: -23.10 SS G_CDS: -1.72 Total: -24.82 kcal Total: -80.58 1.04 -79.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081622656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.674 kcal (2) G-P(sol) polarization free energy of solvation -80.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds