Wall clock time and date at job start Tue Mar 31 2020 05:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00333 * 2 1 4 4 H 1.48503 * 109.47059 * 270.00327 * 3 2 1 5 5 H 1.48505 * 109.47088 * 29.99730 * 3 2 1 6 6 H 1.48493 * 109.47420 * 149.99662 * 3 2 1 7 7 C 1.37878 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00061 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99965 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46885 * 180.02562 * 9 7 2 11 11 C 1.46500 * 120.00238 * 84.86254 * 10 9 7 12 12 C 1.50700 * 109.46752 * 269.99695 * 11 10 9 13 13 C 1.38229 * 119.61996 * 94.97485 * 12 11 10 14 14 C 1.38630 * 119.16378 * 179.78668 * 13 12 11 15 15 C 1.38679 * 118.41666 * 0.48070 * 14 13 12 16 16 C 1.38175 * 119.16437 * 359.50126 * 15 14 13 17 17 N 1.31860 * 119.62057 * 275.00056 * 12 11 10 18 18 C 1.34777 * 119.99594 * 264.85430 * 10 9 7 19 19 O 1.21589 * 119.99607 * 175.25577 * 18 10 9 20 20 C 1.47621 * 120.00333 * 355.26330 * 18 10 9 21 21 C 1.39699 * 120.15518 * 52.29619 * 20 18 10 22 22 C 1.37800 * 119.89373 * 179.74462 * 21 20 18 23 23 C 1.38617 * 120.20195 * 0.53837 * 22 21 20 24 24 Cl 1.73601 * 119.84317 * 179.76169 * 23 22 21 25 25 C 1.38353 * 120.31210 * 359.73806 * 23 22 21 26 26 C 1.38261 * 120.10350 * 359.97438 * 25 23 22 27 27 F 1.35101 * 120.09914 * 179.97438 * 26 25 23 28 28 H 0.96998 * 119.99932 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47201 * 60.00344 * 9 7 2 30 30 H 1.08997 * 109.47161 * 300.00137 * 9 7 2 31 31 H 1.08998 * 109.47441 * 150.00170 * 11 10 9 32 32 H 1.08998 * 109.47415 * 29.99137 * 11 10 9 33 33 H 1.08004 * 120.41710 * 0.02562 * 13 12 11 34 34 H 1.07999 * 120.79357 * 180.23149 * 14 13 12 35 35 H 1.07996 * 120.41452 * 179.78329 * 15 14 13 36 36 H 1.07999 * 119.61781 * 180.25622 * 16 15 14 37 37 H 1.08002 * 120.05175 * 0.02791 * 21 20 18 38 38 H 1.07999 * 119.89805 * 180.25154 * 22 21 20 39 39 H 1.07998 * 119.94712 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.7654 -4.0956 1.2631 12 6 4.0339 -3.3417 1.5690 13 6 3.9874 -2.2319 2.3917 14 6 5.1606 -1.5480 2.6705 15 6 6.3405 -2.0020 2.1005 16 6 6.3095 -3.1192 1.2880 17 7 5.1752 -3.7479 1.0484 18 6 2.5613 -4.1928 -1.1631 19 8 3.4152 -5.0584 -1.1727 20 6 1.9172 -3.7774 -2.4247 21 6 1.8720 -2.4266 -2.7779 22 6 1.2740 -2.0453 -3.9594 23 6 0.7074 -2.9969 -4.7931 24 17 -0.0489 -2.5055 -6.2764 25 6 0.7423 -4.3364 -4.4488 26 6 1.3443 -4.7338 -3.2692 27 9 1.3778 -6.0419 -2.9329 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.9865 -5.1597 1.1793 32 1 2.0455 -3.9362 2.0657 33 1 3.0495 -1.9040 2.8152 34 1 5.1553 -0.6798 3.3129 35 1 7.2726 -1.4916 2.2930 36 1 7.2247 -3.4816 0.8437 37 1 2.3090 -1.6827 -2.1282 38 1 1.2426 -1.0014 -4.2345 39 1 0.2995 -5.0729 -5.1029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084609983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:42 Heat of formation + Delta-G solvation = -17.885733 kcal Electronic energy + Delta-G solvation = -28327.827665 eV Core-core repulsion = 24176.069310 eV Total energy + Delta-G solvation = -4151.758355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.67340 -40.04640 -39.34659 -37.98617 -36.30259 -35.23335 -32.96618 -32.04096 -31.64208 -30.58862 -30.22856 -27.74438 -26.26621 -23.59814 -23.13374 -22.78576 -22.60986 -21.57319 -19.18220 -17.45482 -16.99185 -16.68495 -16.51421 -16.28377 -15.73819 -15.62288 -15.24633 -15.13590 -15.03111 -14.59484 -13.91836 -13.83976 -13.47286 -13.25146 -13.04927 -12.97285 -12.79493 -12.54892 -12.42806 -11.98273 -11.81480 -11.52629 -11.35340 -11.27357 -11.13815 -11.03852 -10.89660 -10.74219 -10.31188 -9.92043 -9.46024 -9.27187 -8.98436 -8.80024 -8.66534 -8.53682 -8.42988 -7.86176 -6.33200 -4.40796 0.97757 1.36687 1.49984 1.73797 2.08614 3.10035 3.17337 3.19879 3.24146 3.63097 3.84508 4.18224 4.37401 4.43040 4.73063 4.89981 5.01373 5.04643 5.14949 5.17872 5.21295 5.41525 5.43728 5.56249 5.75696 5.80803 5.90523 6.01487 6.15071 6.19170 6.19783 6.47310 6.52648 6.55529 6.58970 6.60386 6.95252 7.05668 7.11541 7.38450 7.60816 7.89420 8.15208 8.49641 8.64207 8.85930 9.26278 10.72365 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.010017 B = 0.004695 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.522629 B = 5962.189828 C = 7770.712313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.073 3.927 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.229 3.771 10 N -0.585 5.585 11 C 0.174 3.826 12 C 0.123 3.877 13 C -0.129 4.129 14 C -0.085 4.085 15 C -0.180 4.180 16 C 0.086 3.914 17 N -0.459 5.459 18 C 0.559 3.441 19 O -0.531 6.531 20 C -0.146 4.146 21 C -0.024 4.024 22 C -0.127 4.127 23 C 0.006 3.994 24 Cl -0.068 7.068 25 C -0.166 4.166 26 C 0.149 3.851 27 F -0.125 7.125 28 H 0.267 0.733 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.138 0.862 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.147 0.853 37 H 0.179 0.821 38 H 0.141 0.859 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 -2.556 -1.779 4.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.132 4.132 3 Si 0.713 3.287 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.110 3.890 10 N -0.315 5.315 11 C 0.050 3.950 12 C -0.016 4.016 13 C -0.150 4.150 14 C -0.111 4.111 15 C -0.201 4.201 16 C -0.071 4.071 17 N -0.168 5.168 18 C 0.346 3.654 19 O -0.409 6.409 20 C -0.151 4.151 21 C -0.042 4.042 22 C -0.146 4.146 23 C -0.021 4.021 24 Cl -0.039 7.039 25 C -0.186 4.186 26 C 0.128 3.872 27 F -0.103 7.103 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.155 0.845 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.164 0.836 37 H 0.196 0.804 38 H 0.159 0.841 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.078 -3.645 -2.419 5.349 hybrid contribution 0.278 1.951 0.431 2.018 sum 3.357 -1.693 -1.989 4.254 Atomic orbital electron populations 1.69916 1.05902 1.27479 1.48372 1.24897 0.94722 0.98965 0.94616 0.86676 0.80079 0.83346 0.78647 1.20286 1.20973 1.19642 1.21426 0.93613 0.90160 1.52531 0.91828 1.19674 0.87550 0.82566 0.99248 1.48069 1.44411 1.34913 1.04141 1.20117 0.90168 0.97999 0.86741 1.21593 0.93847 0.93822 0.92382 1.21999 0.99088 0.95269 0.98615 1.21498 0.92616 0.98745 0.98279 1.22038 0.98941 0.98834 1.00244 1.22640 0.96236 0.92650 0.95583 1.67580 0.98215 1.31172 1.19865 1.17920 0.82324 0.81806 0.83383 1.90791 1.31317 1.32333 1.86428 1.20151 1.03734 0.94110 0.97062 1.22127 0.92835 0.94823 0.94384 1.21100 0.99603 0.99743 0.94158 1.20759 0.98703 0.93407 0.89245 1.98362 1.80462 1.91695 1.33375 1.20694 1.04995 0.95528 0.97366 1.17364 0.98382 0.77921 0.93490 1.91534 1.94255 1.32387 1.92143 0.92313 0.93659 0.94455 0.89302 0.89120 0.84463 0.85498 0.85681 0.83603 0.80424 0.84091 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.88 13.29 55.43 0.74 -21.14 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 18.80 29.54 -169.99 -5.02 13.78 16 4 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.54 -12.27 6.10 -34.44 -0.21 -12.48 16 8 H 0.06 1.53 7.01 -52.48 -0.37 1.16 16 9 C 0.23 4.95 4.71 -5.19 -0.02 4.93 16 10 N -0.58 -11.90 2.45 -177.63 -0.43 -12.33 16 11 C 0.17 3.16 5.72 -5.19 -0.03 3.13 16 12 C 0.12 2.26 5.84 -82.58 -0.48 1.78 16 13 C -0.13 -2.18 8.66 -39.44 -0.34 -2.52 16 14 C -0.09 -1.28 10.18 -39.27 -0.40 -1.68 16 15 C -0.18 -2.57 10.11 -39.44 -0.40 -2.97 16 16 C 0.09 1.38 11.18 -17.55 -0.20 1.19 16 17 N -0.46 -8.79 10.27 -9.47 -0.10 -8.89 16 18 C 0.56 11.97 6.92 -12.43 -0.09 11.88 16 19 O -0.53 -12.53 16.43 5.29 0.09 -12.44 16 20 C -0.15 -2.86 4.79 -104.91 -0.50 -3.37 16 21 C -0.02 -0.44 7.63 -39.20 -0.30 -0.74 16 22 C -0.13 -2.07 9.81 -39.60 -0.39 -2.46 16 23 C 0.01 0.09 6.32 -39.40 -0.25 -0.16 16 24 Cl -0.07 -0.88 28.95 -51.86 -1.50 -2.38 16 25 C -0.17 -2.52 9.79 -39.53 -0.39 -2.91 16 26 C 0.15 2.66 7.27 -38.96 -0.28 2.38 16 27 F -0.12 -2.31 16.61 2.25 0.04 -2.28 16 28 H 0.27 6.42 8.31 -40.82 -0.34 6.09 16 29 H 0.05 1.03 5.63 -51.93 -0.29 0.74 16 30 H 0.04 0.84 7.96 -51.93 -0.41 0.43 16 31 H 0.09 1.64 7.49 -51.93 -0.39 1.25 16 32 H 0.09 1.42 7.84 -51.93 -0.41 1.01 16 33 H 0.14 2.22 8.06 -52.48 -0.42 1.80 16 34 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.15 1.94 8.06 -52.49 -0.42 1.51 16 37 H 0.18 3.64 5.15 -52.49 -0.27 3.37 16 38 H 0.14 2.08 8.06 -52.49 -0.42 1.65 16 39 H 0.14 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -27.70 357.10 -9.00 -36.71 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -3.81 Total: 5.97 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -4.38 Total: -2.36 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.20 Total: -42.37 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.70 -9.00 -36.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084609983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.820 kcal (2) G-P(sol) polarization free energy of solvation -27.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds