Wall clock time and date at job start Tue Mar 31 2020 05:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00333 * 2 1 4 4 H 1.48503 * 109.47059 * 270.00327 * 3 2 1 5 5 H 1.48505 * 109.47088 * 29.99730 * 3 2 1 6 6 H 1.48493 * 109.47420 * 149.99662 * 3 2 1 7 7 C 1.37878 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00061 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99965 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46885 * 180.02562 * 9 7 2 11 11 C 1.46500 * 120.00238 * 84.86254 * 10 9 7 12 12 C 1.50700 * 109.46752 * 269.99695 * 11 10 9 13 13 C 1.38229 * 119.61996 * 94.97485 * 12 11 10 14 14 C 1.38630 * 119.16378 * 179.78668 * 13 12 11 15 15 C 1.38679 * 118.41666 * 0.48070 * 14 13 12 16 16 C 1.38175 * 119.16437 * 359.50126 * 15 14 13 17 17 N 1.31860 * 119.62057 * 275.00056 * 12 11 10 18 18 C 1.34777 * 119.99594 * 264.85430 * 10 9 7 19 19 O 1.21589 * 119.99607 * 175.25577 * 18 10 9 20 20 C 1.47621 * 120.00333 * 355.26330 * 18 10 9 21 21 C 1.39699 * 120.15518 * 52.29619 * 20 18 10 22 22 C 1.37800 * 119.89373 * 179.74462 * 21 20 18 23 23 C 1.38617 * 120.20195 * 0.53837 * 22 21 20 24 24 Cl 1.73601 * 119.84317 * 179.76169 * 23 22 21 25 25 C 1.38353 * 120.31210 * 359.73806 * 23 22 21 26 26 C 1.38261 * 120.10350 * 359.97438 * 25 23 22 27 27 F 1.35101 * 120.09914 * 179.97438 * 26 25 23 28 28 H 0.96998 * 119.99932 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47201 * 60.00344 * 9 7 2 30 30 H 1.08997 * 109.47161 * 300.00137 * 9 7 2 31 31 H 1.08998 * 109.47441 * 150.00170 * 11 10 9 32 32 H 1.08998 * 109.47415 * 29.99137 * 11 10 9 33 33 H 1.08004 * 120.41710 * 0.02562 * 13 12 11 34 34 H 1.07999 * 120.79357 * 180.23149 * 14 13 12 35 35 H 1.07996 * 120.41452 * 179.78329 * 15 14 13 36 36 H 1.07999 * 119.61781 * 180.25622 * 16 15 14 37 37 H 1.08002 * 120.05175 * 0.02791 * 21 20 18 38 38 H 1.07999 * 119.89805 * 180.25154 * 22 21 20 39 39 H 1.07998 * 119.94712 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.7654 -4.0956 1.2631 12 6 4.0339 -3.3417 1.5690 13 6 3.9874 -2.2319 2.3917 14 6 5.1606 -1.5480 2.6705 15 6 6.3405 -2.0020 2.1005 16 6 6.3095 -3.1192 1.2880 17 7 5.1752 -3.7479 1.0484 18 6 2.5613 -4.1928 -1.1631 19 8 3.4152 -5.0584 -1.1727 20 6 1.9172 -3.7774 -2.4247 21 6 1.8720 -2.4266 -2.7779 22 6 1.2740 -2.0453 -3.9594 23 6 0.7074 -2.9969 -4.7931 24 17 -0.0489 -2.5055 -6.2764 25 6 0.7423 -4.3364 -4.4488 26 6 1.3443 -4.7338 -3.2692 27 9 1.3778 -6.0419 -2.9329 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.9865 -5.1597 1.1793 32 1 2.0455 -3.9362 2.0657 33 1 3.0495 -1.9040 2.8152 34 1 5.1553 -0.6798 3.3129 35 1 7.2726 -1.4916 2.2930 36 1 7.2247 -3.4816 0.8437 37 1 2.3090 -1.6827 -2.1282 38 1 1.2426 -1.0014 -4.2345 39 1 0.2995 -5.0729 -5.1029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084609983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:41 Heat of formation + Delta-G solvation = -30.953957 kcal Electronic energy + Delta-G solvation = -28328.394346 eV Core-core repulsion = 24176.069310 eV Total energy + Delta-G solvation = -4152.325036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.09626 -41.49398 -40.70276 -39.41168 -37.49857 -36.90904 -34.68302 -33.38356 -33.00683 -31.92444 -31.59005 -29.45121 -27.73610 -25.19220 -24.54010 -24.19789 -23.98098 -22.89659 -20.69323 -18.86463 -18.69010 -18.25847 -17.95066 -17.56638 -17.20845 -17.00381 -16.66449 -16.52905 -16.44670 -16.17165 -15.40126 -15.29127 -14.88601 -14.61647 -14.41466 -14.29227 -14.16658 -14.04792 -13.88881 -13.49900 -13.35028 -13.09399 -12.78155 -12.70280 -12.58977 -12.51164 -12.30062 -12.09630 -11.94802 -11.70240 -10.97090 -10.68101 -10.57568 -10.30152 -10.03578 -9.86421 -9.80801 -9.49097 -8.15828 -6.26927 -0.39940 0.02915 0.24577 0.49967 0.87353 1.41324 1.47278 1.53017 1.62984 2.13719 2.37957 2.46912 3.04205 3.06803 3.14644 3.45202 3.53466 3.65917 3.87136 3.92072 4.06664 4.07112 4.26459 4.33436 4.43439 4.49219 4.57689 4.67964 4.82238 4.87184 4.90706 4.95525 5.08387 5.13783 5.23383 5.30513 5.36907 5.55883 5.68604 5.78310 5.89798 6.08375 6.47041 6.81779 7.18683 7.22328 7.42710 8.89610 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.010017 B = 0.004695 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.522629 B = 5962.189828 C = 7770.712313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.041 3.959 3 Si 0.934 3.066 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.524 4.524 8 H 0.051 0.949 9 C 0.244 3.756 10 N -0.583 5.583 11 C 0.169 3.831 12 C 0.102 3.898 13 C -0.140 4.140 14 C -0.088 4.088 15 C -0.168 4.168 16 C 0.072 3.928 17 N -0.498 5.498 18 C 0.553 3.447 19 O -0.562 6.562 20 C -0.169 4.169 21 C -0.035 4.035 22 C -0.123 4.123 23 C 0.012 3.988 24 Cl -0.039 7.039 25 C -0.149 4.149 26 C 0.137 3.863 27 F -0.132 7.132 28 H 0.267 0.733 29 H 0.034 0.966 30 H 0.027 0.973 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.137 0.863 34 H 0.156 0.844 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 -1.227 -2.601 4.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.161 4.161 3 Si 0.760 3.240 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.562 4.562 8 H 0.069 0.931 9 C 0.124 3.876 10 N -0.312 5.312 11 C 0.046 3.954 12 C -0.036 4.036 13 C -0.161 4.161 14 C -0.114 4.114 15 C -0.187 4.187 16 C -0.085 4.085 17 N -0.208 5.208 18 C 0.341 3.659 19 O -0.442 6.442 20 C -0.173 4.173 21 C -0.053 4.053 22 C -0.142 4.142 23 C -0.015 4.015 24 Cl -0.010 7.010 25 C -0.168 4.168 26 C 0.116 3.884 27 F -0.111 7.111 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.097 0.903 32 H 0.127 0.873 33 H 0.155 0.845 34 H 0.173 0.827 35 H 0.182 0.818 36 H 0.186 0.814 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.566 -2.311 -3.230 5.338 hybrid contribution 0.153 1.532 0.628 1.662 sum 3.719 -0.779 -2.602 4.606 Atomic orbital electron populations 1.69993 1.06911 1.27973 1.49690 1.25364 0.95147 1.01103 0.94514 0.85909 0.79020 0.80499 0.78532 1.20063 1.21099 1.19525 1.21322 0.92764 0.90563 1.51588 0.93123 1.19391 0.87394 0.82717 0.98058 1.48082 1.43978 1.34341 1.04835 1.20261 0.91204 0.97550 0.86394 1.21499 0.93580 0.94810 0.93716 1.22073 1.00107 0.95192 0.98712 1.21902 0.92120 0.99182 0.98227 1.22430 1.00251 0.97727 0.98321 1.23137 0.96089 0.93278 0.96000 1.67520 0.99315 1.32785 1.21131 1.18284 0.82005 0.81366 0.84211 1.90752 1.32712 1.33761 1.86987 1.20126 1.05255 0.95027 0.96903 1.21850 0.94118 0.93936 0.95393 1.21236 0.98738 1.00869 0.93338 1.20791 0.97750 0.93083 0.89878 1.98378 1.79752 1.91476 1.31387 1.20958 1.03286 0.96281 0.96283 1.17529 0.99164 0.77382 0.94313 1.91511 1.94408 1.32805 1.92364 0.92353 0.94761 0.95535 0.90290 0.87263 0.84487 0.82681 0.81772 0.81427 0.82551 0.82520 0.80705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.17 13.29 21.45 0.28 -44.88 16 2 C 0.04 1.91 5.46 84.65 0.46 2.37 16 3 Si 0.93 37.99 29.54 68.60 2.03 40.02 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.29 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.52 -24.13 6.10 25.60 0.16 -23.97 16 8 H 0.05 2.47 7.01 -2.91 -0.02 2.45 16 9 C 0.24 10.88 4.71 85.63 0.40 11.28 16 10 N -0.58 -24.65 2.45 -834.17 -2.04 -26.70 16 11 C 0.17 6.43 5.72 85.63 0.49 6.92 16 12 C 0.10 3.85 5.84 42.55 0.25 4.10 16 13 C -0.14 -4.69 8.66 22.36 0.19 -4.50 16 14 C -0.09 -2.48 10.18 22.47 0.23 -2.25 16 15 C -0.17 -4.35 10.11 22.36 0.23 -4.12 16 16 C 0.07 2.24 11.18 84.67 0.95 3.19 16 17 N -0.50 -19.36 10.27 -183.89 -1.89 -21.25 16 18 C 0.55 24.66 6.92 86.72 0.60 25.26 16 19 O -0.56 -27.68 16.43 -4.00 -0.07 -27.75 16 20 C -0.17 -6.76 4.79 -20.05 -0.10 -6.86 16 21 C -0.03 -1.30 7.63 22.52 0.17 -1.13 16 22 C -0.12 -3.87 9.81 22.26 0.22 -3.65 16 23 C 0.01 0.34 6.32 22.39 0.14 0.48 16 24 Cl -0.04 -0.90 28.95 -2.72 -0.08 -0.98 16 25 C -0.15 -4.24 9.79 22.30 0.22 -4.02 16 26 C 0.14 4.86 7.27 22.67 0.16 5.03 16 27 F -0.13 -4.95 16.61 44.97 0.75 -4.21 16 28 H 0.27 12.81 8.31 -92.71 -0.77 12.04 16 29 H 0.03 1.62 5.63 -2.39 -0.01 1.60 16 30 H 0.03 1.23 7.96 -2.39 -0.02 1.21 16 31 H 0.08 3.10 7.49 -2.39 -0.02 3.08 16 32 H 0.11 3.58 7.84 -2.39 -0.02 3.56 16 33 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 36 H 0.17 4.23 8.06 -2.91 -0.02 4.20 16 37 H 0.16 6.59 5.15 -2.91 -0.01 6.58 16 38 H 0.16 4.35 8.06 -2.91 -0.02 4.33 16 39 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -60.30 357.10 4.86 -55.43 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 1.11 Total: 22.18 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 4.77 Total: 8.14 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -3.65 Total: -92.83 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.07 Total: -27.75 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.75 Total: -4.21 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.98 kcal Total: -60.30 4.86 -55.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084609983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.480 kcal (2) G-P(sol) polarization free energy of solvation -60.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds