Wall clock time and date at job start Tue Mar 31 2020 05:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81400 * 109.47397 * 2 1 4 4 C 1.81399 * 102.99747 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.67584 * 51.76559 * 4 3 2 6 6 C 1.54889 * 110.75480 * 288.32286 * 4 3 2 7 7 C 1.54265 * 104.19240 * 203.74355 * 6 4 3 8 8 C 1.53872 * 106.60109 * 23.61408 * 7 6 4 9 9 H 1.08994 * 110.03297 * 240.70990 * 8 7 6 10 10 N 1.46506 * 110.03282 * 119.28280 * 8 7 6 11 11 C 1.46504 * 119.99702 * 302.83260 * 10 8 7 12 12 C 1.34773 * 120.00157 * 122.83109 * 10 8 7 13 13 O 1.21578 * 120.00098 * 0.02562 * 12 10 8 14 14 N 1.34772 * 119.99974 * 179.97438 * 12 10 8 15 15 C 1.39245 * 119.99996 * 175.35798 * 14 12 10 16 16 C 1.39489 * 119.83153 * 215.22422 * 15 14 12 17 17 C 1.36373 * 120.16570 * 179.75799 * 16 15 14 18 18 C 1.40870 * 119.82780 * 0.49074 * 17 16 15 19 19 C 1.41158 * 120.15990 * 179.78414 * 18 17 16 20 20 H 1.08005 * 119.99600 * 148.77764 * 19 18 17 21 21 C 1.39888 * 120.00554 * 328.77668 * 19 18 17 22 22 N 1.30876 * 120.00462 * 167.80093 * 21 19 18 23 23 Si 1.86803 * 119.99633 * 347.80175 * 21 19 18 24 24 H 1.48495 * 109.47418 * 92.61302 * 23 21 19 25 25 H 1.48505 * 109.46932 * 212.61435 * 23 21 19 26 26 H 1.48507 * 109.47065 * 332.60816 * 23 21 19 27 27 C 1.40861 * 119.67426 * 359.76234 * 18 17 16 28 28 C 1.36381 * 119.83224 * 0.02562 * 27 18 17 29 29 C 1.54268 * 106.59807 * 359.97438 * 8 7 6 30 30 H 1.09007 * 109.46494 * 60.00142 * 1 2 3 31 31 H 1.09004 * 109.47220 * 300.00583 * 1 2 3 32 32 H 1.08993 * 109.47339 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46494 * 119.99857 * 2 1 3 34 34 H 1.08995 * 109.47110 * 239.99670 * 2 1 3 35 35 H 1.08998 * 110.48595 * 322.42359 * 6 4 3 36 36 H 1.09001 * 110.48141 * 85.07045 * 6 4 3 37 37 H 1.09005 * 110.03489 * 264.32230 * 7 6 4 38 38 H 1.09003 * 110.02684 * 142.89704 * 7 6 4 39 39 H 1.09001 * 109.47187 * 90.00314 * 11 10 8 40 40 H 1.09002 * 109.47033 * 210.00242 * 11 10 8 41 41 H 1.09001 * 109.47170 * 329.99934 * 11 10 8 42 42 H 0.96997 * 120.00430 * 355.35847 * 14 12 10 43 43 H 1.07992 * 119.91277 * 359.97438 * 16 15 14 44 44 H 1.07998 * 120.08634 * 180.22806 * 17 16 15 45 45 H 0.96997 * 120.00355 * 179.97438 * 22 21 19 46 46 H 1.08004 * 120.09132 * 179.97438 * 27 18 17 47 47 H 1.07996 * 119.92075 * 179.97438 * 28 27 18 48 48 H 1.08999 * 110.48402 * 217.71483 * 29 8 7 49 49 H 1.09001 * 110.48777 * 95.06977 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.9372 1.5056 0.0008 5 1 4.2487 0.8350 -0.8000 6 6 4.4306 0.9915 1.3760 7 6 5.9049 1.4410 1.4411 8 6 6.0414 2.6401 0.4865 9 1 6.7600 2.4110 -0.3003 10 7 6.4718 3.8269 1.2299 11 6 5.6767 4.3108 2.3613 12 6 7.5991 4.4736 0.8729 13 8 8.2587 4.0723 -0.0663 14 7 7.9948 5.5656 1.5565 15 6 9.2079 6.1768 1.2506 16 6 9.9732 6.7477 2.2675 17 6 11.1648 7.3436 1.9763 18 6 11.6172 7.3909 0.6431 19 6 12.8473 8.0100 0.3331 20 1 13.4386 7.6511 -0.4964 21 6 13.3005 9.0885 1.1002 22 7 14.5334 9.5091 0.9738 23 14 12.1459 9.9283 2.3049 24 1 12.2914 9.3064 3.6454 25 1 12.4836 11.3719 2.3896 26 1 10.7449 9.7743 1.8370 27 6 10.8363 6.8169 -0.3791 28 6 9.6489 6.2205 -0.0720 29 6 4.6454 2.8770 -0.1259 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 3.8566 1.4480 2.1823 36 1 4.3607 -0.0952 1.4244 37 1 6.5573 0.6299 1.1175 38 1 6.1588 1.7421 2.4575 39 1 6.0231 3.8349 3.2787 40 1 5.7885 5.3916 2.4481 41 1 4.6271 4.0660 2.1989 42 1 7.4345 5.9259 2.2615 43 1 9.6228 6.7145 3.2885 44 1 11.7580 7.7820 2.7652 45 1 14.8475 10.2572 1.5054 46 1 11.1765 6.8496 -1.4037 47 1 9.0488 5.7803 -0.8546 48 1 4.7325 3.1666 -1.1731 49 1 4.1057 3.6380 0.4378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089274940.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:11 Heat of formation + Delta-G solvation = -7.007858 kcal Electronic energy + Delta-G solvation = -27671.188342 eV Core-core repulsion = 23917.071887 eV Total energy + Delta-G solvation = -3754.116455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.161 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.49929 -38.65074 -37.36996 -34.70336 -34.42573 -33.24195 -32.96099 -29.87074 -29.68534 -29.17318 -28.44636 -26.67732 -24.66692 -23.92929 -22.12103 -21.27731 -21.16934 -20.30638 -19.20521 -18.31861 -17.42873 -16.99665 -16.65005 -16.13887 -15.74283 -15.45303 -15.23337 -15.13205 -14.79719 -14.09071 -13.89173 -13.75699 -13.51248 -13.24324 -13.07749 -12.95080 -12.74921 -12.59052 -12.49199 -12.24314 -12.22753 -12.07584 -11.92579 -11.80901 -11.75165 -11.39089 -11.13464 -10.88469 -10.83428 -10.77594 -10.50379 -10.19977 -10.14521 -9.76348 -9.59362 -9.09288 -9.01149 -8.65468 -8.04315 -7.75773 -7.10717 -6.88309 -4.39574 1.26319 2.18395 2.47211 2.73627 2.80738 3.10259 3.22583 3.32133 3.51961 4.00488 4.05823 4.14735 4.36860 4.44873 4.49951 4.56538 4.56775 4.89236 4.89746 4.96159 5.03363 5.07606 5.12621 5.18899 5.24342 5.28586 5.31759 5.39453 5.45095 5.52526 5.60342 5.64695 5.82317 5.89292 5.92062 5.96002 6.14723 6.39563 6.51512 6.75434 6.80154 6.89339 6.99696 7.27806 7.41161 7.61254 7.71138 7.89145 8.17193 8.28749 8.38593 8.66835 8.83367 8.95715 10.14456 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.035742 B = 0.001829 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.213080 B =15307.038666 C =15521.716908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 S -0.257 6.257 4 C -0.059 4.059 5 H 0.094 0.906 6 C -0.114 4.114 7 C -0.134 4.134 8 C 0.160 3.840 9 H 0.109 0.891 10 N -0.630 5.630 11 C 0.077 3.923 12 C 0.699 3.301 13 O -0.576 6.576 14 N -0.667 5.667 15 C 0.013 3.987 16 C -0.092 4.092 17 C -0.226 4.226 18 C 0.087 3.913 19 C -0.443 4.443 20 H 0.091 0.909 21 C 0.080 3.920 22 N -0.816 5.816 23 Si 0.916 3.084 24 H -0.272 1.272 25 H -0.294 1.294 26 H -0.243 1.243 27 C -0.197 4.197 28 C -0.069 4.069 29 C -0.112 4.112 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.392 0.608 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.284 0.716 46 H 0.103 0.897 47 H 0.114 0.886 48 H 0.080 0.920 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.399 -15.744 3.612 30.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.239 4.239 3 S -0.028 6.028 4 C -0.189 4.189 5 H 0.113 0.887 6 C -0.153 4.153 7 C -0.174 4.174 8 C 0.054 3.946 9 H 0.127 0.873 10 N -0.368 5.368 11 C -0.066 4.066 12 C 0.401 3.599 13 O -0.453 6.453 14 N -0.314 5.314 15 C -0.080 4.080 16 C -0.112 4.112 17 C -0.246 4.246 18 C 0.083 3.917 19 C -0.472 4.472 20 H 0.109 0.891 21 C -0.138 4.138 22 N -0.441 5.441 23 Si 0.744 3.256 24 H -0.199 1.199 25 H -0.222 1.222 26 H -0.167 1.167 27 C -0.217 4.217 28 C -0.089 4.089 29 C -0.151 4.151 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.228 0.772 43 H 0.113 0.887 44 H 0.121 0.879 45 H 0.094 0.906 46 H 0.121 0.879 47 H 0.132 0.868 48 H 0.099 0.901 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -25.303 -14.952 2.934 29.537 hybrid contribution 0.098 -0.542 1.066 1.200 sum -25.205 -15.494 4.000 29.855 Atomic orbital electron populations 1.21516 0.92300 1.02506 1.03213 1.23292 1.00115 0.95611 1.04848 1.86927 1.05322 1.12659 1.97901 1.24117 0.92443 1.01287 1.01007 0.88722 1.22707 0.96223 1.00732 0.95677 1.22555 0.96070 0.97874 1.00881 1.21488 0.95436 0.83510 0.94128 0.87287 1.47081 1.25257 1.30313 1.34145 1.21668 0.96537 0.99383 0.89045 1.15928 0.80776 0.80093 0.83067 1.90890 1.55512 1.68631 1.30291 1.42223 1.21713 1.28016 1.39440 1.16952 0.88700 1.08684 0.93634 1.20092 0.94640 1.00674 0.95831 1.20588 0.98374 1.09246 0.96391 1.17802 0.92183 0.90883 0.90786 1.19471 1.01845 1.12346 1.13546 0.89148 1.26168 0.95051 0.96765 0.95782 1.69680 1.15570 1.23042 1.35788 0.86266 0.82786 0.76528 0.80024 1.19874 1.22206 1.16660 1.20742 0.95710 1.07157 0.98043 1.20563 0.96980 0.97123 0.94226 1.22605 0.94974 0.94937 1.02605 0.91686 0.91696 0.91169 0.90136 0.90213 0.90221 0.91413 0.90769 0.90510 0.92743 0.91516 0.90721 0.77248 0.88742 0.87929 0.90557 0.87878 0.86779 0.90112 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 9.92 37.16 0.37 -0.31 16 2 C -0.09 -0.52 6.65 37.16 0.25 -0.28 16 3 S -0.26 -2.09 21.16 -107.50 -2.27 -4.36 16 4 C -0.06 -0.45 3.40 -24.75 -0.08 -0.53 16 5 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 6 C -0.11 -0.76 6.28 -25.07 -0.16 -0.92 16 7 C -0.13 -1.11 6.28 -25.62 -0.16 -1.27 16 8 C 0.16 1.71 3.30 -66.81 -0.22 1.49 16 9 H 0.11 1.42 6.94 -51.93 -0.36 1.06 16 10 N -0.63 -7.67 2.76 -178.38 -0.49 -8.16 16 11 C 0.08 0.66 9.12 59.85 0.55 1.20 16 12 C 0.70 11.89 8.11 -86.93 -0.71 11.19 16 13 O -0.58 -12.10 13.11 5.30 0.07 -12.03 16 14 N -0.67 -11.29 5.18 -14.10 -0.07 -11.36 16 15 C 0.01 0.28 6.30 -83.56 -0.53 -0.25 16 16 C -0.09 -1.97 9.90 -39.79 -0.39 -2.36 16 17 C -0.23 -5.46 6.93 -39.26 -0.27 -5.73 16 18 C 0.09 2.25 5.13 -106.80 -0.55 1.70 16 19 C -0.44 -12.21 9.59 -37.86 -0.36 -12.57 16 20 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 21 C 0.08 2.12 5.47 -17.34 -0.09 2.03 16 22 N -0.82 -22.07 13.93 55.54 0.77 -21.29 16 23 Si 0.92 20.92 24.39 -169.99 -4.15 16.78 16 24 H -0.27 -5.99 6.67 56.52 0.38 -5.62 16 25 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 26 H -0.24 -5.64 6.66 56.52 0.38 -5.26 16 27 C -0.20 -4.82 9.74 -39.26 -0.38 -5.20 16 28 C -0.07 -1.59 8.61 -39.79 -0.34 -1.93 16 29 C -0.11 -1.01 5.80 -25.08 -0.15 -1.16 16 30 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.54 8.04 -51.93 -0.42 0.12 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.66 7.09 -51.93 -0.37 0.29 16 39 H 0.05 0.41 7.85 -51.93 -0.41 0.01 16 40 H 0.07 0.53 6.30 -51.93 -0.33 0.20 16 41 H 0.07 0.53 6.46 -51.93 -0.34 0.19 16 42 H 0.39 5.24 6.51 -40.82 -0.27 4.97 16 43 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.10 2.45 4.39 -52.49 -0.23 2.22 16 45 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 46 H 0.10 2.42 8.06 -52.48 -0.42 1.99 16 47 H 0.11 2.62 6.22 -52.49 -0.33 2.29 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.08 0.77 6.22 -51.93 -0.32 0.44 16 LS Contribution 393.29 15.07 5.93 5.93 Total: -1.00 -30.96 393.29 -11.07 -42.03 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.62 Total: 7.40 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -3.24 Total: -14.92 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.21 Total: -40.81 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.07 Total: -12.03 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.15 Total: 16.78 kcal Atomic # 16 Polarization: -2.09 SS G_CDS: -2.27 Total: -4.36 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.96 -11.07 -42.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089274940.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.021 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds