Wall clock time and date at job start Tue Mar 31 2020 05:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81400 * 109.47243 * 2 1 4 4 C 1.81402 * 102.99803 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.43601 * 303.91148 * 4 3 2 6 6 C 1.54887 * 110.48263 * 66.45629 * 4 3 2 7 7 C 1.54893 * 102.74766 * 156.61778 * 6 4 3 8 8 C 1.54263 * 104.19357 * 322.05799 * 7 6 4 9 9 H 1.08999 * 110.03261 * 264.26963 * 8 7 6 10 10 N 1.46503 * 110.03216 * 142.89632 * 8 7 6 11 11 C 1.46499 * 119.99672 * 302.08891 * 10 8 7 12 12 C 1.34776 * 120.00512 * 122.09048 * 10 8 7 13 13 O 1.21582 * 119.99529 * 359.97438 * 12 10 8 14 14 N 1.34771 * 120.00362 * 180.02562 * 12 10 8 15 15 C 1.39243 * 120.00113 * 175.37450 * 14 12 10 16 16 C 1.39483 * 119.83465 * 216.04506 * 15 14 12 17 17 C 1.36376 * 120.16647 * 180.02562 * 16 15 14 18 18 C 1.40866 * 119.83055 * 0.02562 * 17 16 15 19 19 C 1.41154 * 120.16198 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00099 * 24.75602 * 19 18 17 21 21 C 1.39893 * 120.00108 * 205.02656 * 19 18 17 22 22 N 1.30884 * 119.99617 * 15.39057 * 21 19 18 23 23 Si 1.86791 * 120.00453 * 195.38888 * 21 19 18 24 24 H 1.48505 * 109.47413 * 59.99996 * 23 21 19 25 25 H 1.48503 * 109.47581 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47120 * 300.00099 * 23 21 19 27 27 C 1.40871 * 119.67249 * 0.25104 * 18 17 16 28 28 C 1.36377 * 119.82820 * 359.46443 * 27 18 17 29 29 C 1.53869 * 106.64231 * 23.58420 * 8 7 6 30 30 H 1.08998 * 109.46992 * 300.00181 * 1 2 3 31 31 H 1.09009 * 109.46657 * 60.00065 * 1 2 3 32 32 H 1.08992 * 109.47257 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46992 * 239.99819 * 2 1 3 34 34 H 1.09000 * 109.46822 * 119.99772 * 2 1 3 35 35 H 1.08995 * 110.76087 * 38.30239 * 6 4 3 36 36 H 1.09001 * 110.75858 * 274.93059 * 6 4 3 37 37 H 1.08996 * 110.48889 * 203.37453 * 7 6 4 38 38 H 1.09009 * 110.48343 * 80.73464 * 7 6 4 39 39 H 1.08999 * 109.47013 * 270.00035 * 11 10 8 40 40 H 1.08996 * 109.47609 * 29.99887 * 11 10 8 41 41 H 1.09004 * 109.47244 * 150.00312 * 11 10 8 42 42 H 0.97000 * 119.99962 * 355.37121 * 14 12 10 43 43 H 1.07998 * 119.90977 * 0.02562 * 16 15 14 44 44 H 1.08004 * 120.08073 * 180.02562 * 17 16 15 45 45 H 0.97007 * 120.00048 * 180.02562 * 22 21 19 46 46 H 1.07999 * 120.08679 * 179.73020 * 27 18 17 47 47 H 1.07995 * 119.91699 * 180.24721 * 28 27 18 48 48 H 1.09008 * 110.03324 * 119.31163 * 29 8 7 49 49 H 1.09000 * 110.03278 * 240.73805 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9372 1.5057 0.0008 5 1 4.2507 0.8967 0.8487 6 6 4.4109 0.8685 -1.3291 7 6 5.8899 1.3202 -1.4167 8 6 5.8781 2.7624 -0.8694 9 1 5.8118 3.4737 -1.6926 10 7 7.0914 3.0124 -0.0874 11 6 7.4054 2.1677 1.0677 12 6 7.9188 4.0195 -0.4305 13 8 7.6584 4.7202 -1.3893 14 7 9.0353 4.2491 0.2886 15 6 9.9388 5.2261 -0.1213 16 6 11.3074 5.0240 0.0565 17 6 12.1983 5.9766 -0.3420 18 6 11.7331 7.1672 -0.9339 19 6 12.6489 8.1581 -1.3485 20 1 13.6651 7.8859 -1.5926 21 6 12.2418 9.4935 -1.4376 22 7 11.1309 9.8787 -0.8628 23 14 13.2837 10.7269 -2.3769 24 1 13.4074 10.2944 -3.7922 25 1 12.6388 12.0634 -2.3219 26 1 14.6337 10.8036 -1.7630 27 6 10.3490 7.3666 -1.1048 28 6 9.4706 6.4024 -0.7067 29 6 4.6364 2.8816 0.0316 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8376 1.2583 -2.1701 36 1 4.3410 -0.2183 -1.2832 37 1 6.2320 1.3076 -2.4515 38 1 6.5209 0.6823 -0.7976 39 1 6.9584 2.5973 1.9642 40 1 7.0048 1.1671 0.9057 41 1 8.4868 2.1103 1.1926 42 1 9.2094 3.7338 1.0918 43 1 11.6624 4.1109 0.5109 44 1 13.2577 5.8185 -0.2040 45 1 10.8483 10.8046 -0.9249 46 1 9.9848 8.2787 -1.5539 47 1 8.4095 6.5521 -0.8407 48 1 4.9366 3.1255 1.0507 49 1 3.9670 3.6501 -0.3550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089274942.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:14 Heat of formation + Delta-G solvation = -9.352410 kcal Electronic energy + Delta-G solvation = -27618.786474 eV Core-core repulsion = 23864.568352 eV Total energy + Delta-G solvation = -3754.218122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.161 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.35855 -38.47974 -37.10445 -34.58584 -34.38375 -33.19693 -32.77333 -29.44366 -29.16226 -29.10528 -28.27572 -26.58658 -24.77235 -23.86934 -21.70807 -21.22362 -21.15813 -20.09042 -19.00594 -18.14782 -17.26419 -16.77728 -16.67291 -16.02718 -15.52417 -15.38482 -15.17446 -15.02468 -14.63262 -14.03955 -13.90059 -13.63886 -13.40274 -13.16556 -12.85066 -12.79684 -12.66253 -12.46071 -12.19918 -12.02266 -11.98027 -11.83977 -11.73944 -11.64554 -11.34340 -11.28494 -11.05743 -11.05096 -11.02534 -10.80967 -10.64141 -10.11789 -9.93827 -9.67098 -9.41493 -9.04739 -8.84525 -8.54796 -7.97696 -7.45455 -6.93538 -6.66328 -4.25205 1.33627 2.24634 2.70548 2.91555 3.10168 3.11481 3.13782 3.21823 3.68655 3.97330 4.12864 4.22399 4.39429 4.49473 4.55491 4.69643 4.75661 4.93938 4.94863 5.02498 5.08813 5.11250 5.18374 5.25889 5.28453 5.35018 5.37030 5.47132 5.50214 5.65257 5.71944 5.75983 5.87408 5.96250 6.03979 6.19050 6.44560 6.53685 6.88463 6.95654 7.10539 7.14906 7.34479 7.37491 7.67960 7.86736 8.07520 8.11605 8.32051 8.48800 8.69794 8.94197 8.97388 9.15331 10.24404 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.026383 B = 0.001820 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.020379 B =15377.243286 C =15961.302172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 S -0.258 6.258 4 C -0.056 4.056 5 H 0.089 0.911 6 C -0.116 4.116 7 C -0.133 4.133 8 C 0.160 3.840 9 H 0.110 0.890 10 N -0.632 5.632 11 C 0.077 3.923 12 C 0.697 3.303 13 O -0.574 6.574 14 N -0.665 5.665 15 C 0.010 3.990 16 C -0.107 4.107 17 C -0.215 4.215 18 C 0.103 3.897 19 C -0.459 4.459 20 H 0.076 0.924 21 C 0.073 3.927 22 N -0.794 5.794 23 Si 0.910 3.090 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.266 1.266 27 C -0.155 4.155 28 C -0.086 4.086 29 C -0.112 4.112 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.390 0.610 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.281 0.719 46 H 0.123 0.877 47 H 0.107 0.893 48 H 0.080 0.920 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.876 -19.595 3.995 25.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.239 4.239 3 S -0.029 6.029 4 C -0.185 4.185 5 H 0.108 0.892 6 C -0.156 4.156 7 C -0.173 4.173 8 C 0.054 3.946 9 H 0.128 0.872 10 N -0.370 5.370 11 C -0.067 4.067 12 C 0.399 3.601 13 O -0.451 6.451 14 N -0.312 5.312 15 C -0.083 4.083 16 C -0.128 4.128 17 C -0.236 4.236 18 C 0.101 3.899 19 C -0.488 4.488 20 H 0.095 0.905 21 C -0.144 4.144 22 N -0.419 5.419 23 Si 0.734 3.266 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.191 1.191 27 C -0.175 4.175 28 C -0.106 4.106 29 C -0.152 4.152 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.224 0.776 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.091 0.909 46 H 0.140 0.860 47 H 0.125 0.875 48 H 0.099 0.901 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.835 -17.928 3.365 24.822 hybrid contribution 1.261 -0.923 0.285 1.589 sum -15.574 -18.851 3.650 24.723 Atomic orbital electron populations 1.21514 0.92342 1.02440 1.03239 1.23284 1.00114 0.95798 1.04734 1.87037 1.05558 1.12441 1.97907 1.24025 0.92450 1.00947 1.01081 0.89226 1.22843 0.96362 1.00038 0.96345 1.22780 0.96039 0.96186 1.02257 1.21482 0.82016 0.97253 0.93805 0.87174 1.47107 1.24650 1.33205 1.32077 1.21649 1.01116 0.95333 0.88554 1.15965 0.80504 0.80848 0.82762 1.90901 1.74643 1.49493 1.30071 1.42225 1.21577 1.39715 1.27660 1.17012 0.87261 0.90342 1.13646 1.19998 0.91312 0.98210 1.03238 1.20510 0.97130 0.97575 1.08335 1.17669 0.92700 0.91311 0.88270 1.19505 0.98168 0.91431 1.39729 0.90539 1.25916 0.95235 0.99669 0.93589 1.69837 1.20946 1.18533 1.32625 0.86348 0.80437 0.78825 0.80959 1.18860 1.20373 1.19081 1.21069 0.93000 0.99100 1.04297 1.20574 0.99099 0.91721 0.99209 1.22399 0.96254 0.94771 1.01731 0.91724 0.91650 0.91234 0.90128 0.90359 0.89766 0.91283 0.90474 0.90774 0.92914 0.91032 0.91399 0.77561 0.89406 0.88721 0.90851 0.85965 0.87539 0.90129 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.92 37.16 0.37 -0.38 16 2 C -0.09 -0.57 6.53 37.16 0.24 -0.33 16 3 S -0.26 -2.32 21.01 -107.50 -2.26 -4.58 16 4 C -0.06 -0.45 3.38 -25.02 -0.08 -0.54 16 5 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 6 C -0.12 -0.87 6.20 -24.74 -0.15 -1.02 16 7 C -0.13 -1.19 6.35 -25.07 -0.16 -1.35 16 8 C 0.16 1.87 3.30 -66.82 -0.22 1.65 16 9 H 0.11 1.60 6.94 -51.93 -0.36 1.24 16 10 N -0.63 -8.31 2.75 -178.39 -0.49 -8.80 16 11 C 0.08 0.70 9.13 59.85 0.55 1.24 16 12 C 0.70 12.83 8.11 -86.92 -0.70 12.13 16 13 O -0.57 -13.08 13.15 5.29 0.07 -13.01 16 14 N -0.66 -12.17 5.14 -14.10 -0.07 -12.24 16 15 C 0.01 0.23 6.29 -83.57 -0.53 -0.30 16 16 C -0.11 -2.39 9.90 -39.79 -0.39 -2.79 16 17 C -0.22 -5.30 9.74 -39.26 -0.38 -5.68 16 18 C 0.10 2.81 5.58 -106.80 -0.60 2.22 16 19 C -0.46 -12.36 9.05 -37.86 -0.34 -12.70 16 20 H 0.08 1.96 7.89 -52.49 -0.41 1.55 16 21 C 0.07 1.88 5.19 -17.34 -0.09 1.79 16 22 N -0.79 -21.01 10.82 55.55 0.60 -20.41 16 23 Si 0.91 19.04 29.59 -169.99 -5.03 14.01 16 24 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 27 C -0.15 -4.24 8.64 -39.26 -0.34 -4.58 16 28 C -0.09 -2.20 8.61 -39.79 -0.34 -2.55 16 29 C -0.11 -1.13 5.89 -25.56 -0.15 -1.28 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.08 0.68 8.05 -51.93 -0.42 0.26 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.61 6.17 -51.92 -0.32 0.29 16 39 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 40 H 0.07 0.50 6.30 -51.93 -0.33 0.17 16 41 H 0.07 0.58 6.43 -51.93 -0.33 0.25 16 42 H 0.39 5.67 6.62 -40.82 -0.27 5.40 16 43 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 44 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 45 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 46 H 0.12 3.48 6.07 -52.49 -0.32 3.16 16 47 H 0.11 2.78 6.27 -52.49 -0.33 2.45 16 48 H 0.08 0.83 7.20 -51.92 -0.37 0.45 16 49 H 0.08 0.92 7.80 -51.93 -0.40 0.52 16 LS Contribution 398.78 15.07 6.01 6.01 Total: -1.00 -31.23 398.78 -12.14 -43.37 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -7.64 Total: 10.12 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -3.33 Total: -14.46 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.04 Total: -41.46 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.07 Total: -13.01 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Atomic # 16 Polarization: -2.32 SS G_CDS: -2.26 Total: -4.58 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.23 -12.14 -43.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089274942.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.018 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds