Wall clock time and date at job start Tue Mar 31 2020 05:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81394 * 109.46938 * 2 1 4 4 C 1.81401 * 103.00221 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.66847 * 56.77509 * 4 3 2 6 6 C 1.54894 * 110.75604 * 293.54702 * 4 3 2 7 7 C 1.54261 * 104.19507 * 203.55521 * 6 4 3 8 8 C 1.53879 * 106.60053 * 23.60922 * 7 6 4 9 9 H 1.08995 * 110.03560 * 119.33223 * 8 7 6 10 10 N 1.46496 * 110.03349 * 240.71565 * 8 7 6 11 11 C 1.46503 * 120.00301 * 65.35907 * 10 8 7 12 12 C 1.34774 * 120.00341 * 245.35966 * 10 8 7 13 13 O 1.21588 * 119.99757 * 0.02562 * 12 10 8 14 14 N 1.34778 * 120.00370 * 179.97438 * 12 10 8 15 15 C 1.39239 * 119.99905 * 184.67414 * 14 12 10 16 16 C 1.39483 * 119.83135 * 216.91074 * 15 14 12 17 17 C 1.36376 * 120.16632 * 180.02562 * 16 15 14 18 18 C 1.40873 * 119.83028 * 359.97438 * 17 16 15 19 19 C 1.41157 * 120.16211 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99878 * 211.50414 * 19 18 17 21 21 C 1.39896 * 119.99805 * 31.50766 * 19 18 17 22 22 N 1.30881 * 119.99461 * 199.39136 * 21 19 18 23 23 Si 1.86800 * 120.00221 * 19.39501 * 21 19 18 24 24 H 1.48497 * 109.46951 * 269.96313 * 23 21 19 25 25 H 1.48502 * 109.46909 * 29.96667 * 23 21 19 26 26 H 1.48504 * 109.46789 * 149.96422 * 23 21 19 27 27 C 1.40872 * 119.67213 * 0.24997 * 18 17 16 28 28 C 1.36370 * 119.82508 * 359.53087 * 27 18 17 29 29 C 1.54266 * 106.63694 * 0.02562 * 8 7 6 30 30 H 1.09004 * 109.46722 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46938 * 299.99670 * 1 2 3 32 32 H 1.08998 * 109.46918 * 60.00029 * 1 2 3 33 33 H 1.08993 * 109.47085 * 239.99764 * 2 1 3 34 34 H 1.09000 * 109.47342 * 119.99656 * 2 1 3 35 35 H 1.08994 * 110.48419 * 84.87882 * 6 4 3 36 36 H 1.08996 * 110.59775 * 322.29022 * 6 4 3 37 37 H 1.09002 * 110.03614 * 264.32784 * 7 6 4 38 38 H 1.08993 * 110.03315 * 142.89090 * 7 6 4 39 39 H 1.09001 * 109.47486 * 273.92979 * 11 10 8 40 40 H 1.09008 * 109.46805 * 33.92647 * 11 10 8 41 41 H 1.08997 * 109.47505 * 153.92641 * 11 10 8 42 42 H 0.96993 * 119.99717 * 4.67196 * 14 12 10 43 43 H 1.07990 * 119.91837 * 359.97438 * 16 15 14 44 44 H 1.07999 * 120.08635 * 179.97438 * 17 16 15 45 45 H 0.97001 * 119.99846 * 179.97438 * 22 21 19 46 46 H 1.07995 * 120.08106 * 179.72682 * 27 18 17 47 47 H 1.08005 * 119.91210 * 180.20840 * 28 27 18 48 48 H 1.09005 * 110.48248 * 95.04870 * 29 8 7 49 49 H 1.09003 * 110.48829 * 217.68225 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9371 1.5059 0.0008 5 1 4.2568 0.9072 -0.8521 6 6 4.4168 0.8693 1.3289 7 6 5.8914 1.3067 1.4471 8 6 6.0394 2.5859 0.6048 9 1 6.3574 3.4147 1.2371 10 7 7.0141 2.3707 -0.4675 11 6 6.7301 1.4061 -1.5329 12 6 8.1722 3.0601 -0.4739 13 8 8.4081 3.8604 0.4105 14 7 9.0691 2.8618 -1.4601 15 6 10.3056 3.5004 -1.4154 16 6 10.8916 3.9613 -2.5943 17 6 12.1027 4.5872 -2.5584 18 6 12.7617 4.7683 -1.3266 19 6 14.0157 5.4148 -1.2814 20 1 14.7393 5.1377 -0.5290 21 6 14.3213 6.4144 -2.2112 22 7 15.5684 6.7466 -2.4287 23 14 12.9494 7.2749 -3.1422 24 1 12.6672 6.5383 -4.4004 25 1 11.7253 7.3069 -2.3020 26 1 13.3651 8.6637 -3.4643 27 6 12.1657 4.2959 -0.1408 28 6 10.9522 3.6759 -0.1920 29 6 4.6498 2.8825 0.0041 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 4.3439 -0.2171 1.2793 36 1 3.8369 1.2517 2.1688 37 1 6.5449 0.5258 1.0580 38 1 6.1367 1.5150 2.4884 39 1 7.0418 0.4112 -1.2149 40 1 5.6606 1.4018 -1.7435 41 1 7.2765 1.6875 -2.4331 42 1 8.8533 2.2742 -2.2010 43 1 10.3854 3.8213 -3.5379 44 1 12.5555 4.9432 -3.4720 45 1 15.7803 7.4394 -3.0737 46 1 12.6672 4.4273 0.8067 47 1 10.4924 3.3161 0.7167 48 1 4.1075 3.5918 0.6293 49 1 4.7471 3.2649 -1.0120 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089274946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:18 Heat of formation + Delta-G solvation = -6.623926 kcal Electronic energy + Delta-G solvation = -27813.650919 eV Core-core repulsion = 24059.551113 eV Total energy + Delta-G solvation = -3754.099806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.161 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.53982 -38.68620 -37.34763 -34.61957 -34.34410 -33.24970 -32.95821 -29.85470 -29.68631 -29.25972 -28.62536 -26.53640 -24.69261 -23.91421 -22.11981 -21.36000 -21.09923 -20.29430 -19.17151 -18.32367 -17.42474 -16.89987 -16.84405 -16.27844 -15.63453 -15.47134 -15.21076 -15.11398 -14.78346 -14.14513 -13.87150 -13.69511 -13.61058 -13.26495 -12.94974 -12.87015 -12.76353 -12.64650 -12.48287 -12.26045 -12.11311 -12.04115 -11.90210 -11.81939 -11.63423 -11.33880 -11.28851 -11.07505 -10.92030 -10.74459 -10.34880 -10.18720 -10.14568 -9.67372 -9.60122 -9.46590 -8.82682 -8.66515 -8.04413 -7.78869 -7.11070 -6.92402 -4.38977 1.26622 2.18184 2.45767 2.73729 2.80973 3.12523 3.23102 3.35416 3.53304 4.02153 4.03818 4.13680 4.24663 4.44347 4.50050 4.54705 4.60915 4.81725 4.90001 4.98470 5.03848 5.05009 5.12296 5.23444 5.25143 5.27123 5.31518 5.40060 5.41310 5.44454 5.60215 5.65310 5.80305 5.90697 5.93237 5.96763 6.15140 6.40628 6.52586 6.73256 6.80579 6.89526 7.00287 7.25043 7.42371 7.62618 7.71172 7.89619 8.16042 8.28138 8.38139 8.67358 8.83113 8.96599 10.10176 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.030574 B = 0.001912 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.580516 B =14638.789286 C =14947.977732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 S -0.258 6.258 4 C -0.063 4.063 5 H 0.094 0.906 6 C -0.116 4.116 7 C -0.133 4.133 8 C 0.160 3.840 9 H 0.110 0.890 10 N -0.630 5.630 11 C 0.075 3.925 12 C 0.698 3.302 13 O -0.575 6.575 14 N -0.668 5.668 15 C 0.013 3.987 16 C -0.091 4.091 17 C -0.228 4.228 18 C 0.088 3.912 19 C -0.447 4.447 20 H 0.091 0.909 21 C 0.085 3.915 22 N -0.809 5.809 23 Si 0.910 3.090 24 H -0.268 1.268 25 H -0.247 1.247 26 H -0.291 1.291 27 C -0.196 4.196 28 C -0.066 4.066 29 C -0.109 4.109 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.391 0.609 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.284 0.716 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.087 0.913 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.911 -14.329 1.740 29.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.238 4.238 3 S -0.030 6.030 4 C -0.192 4.192 5 H 0.112 0.888 6 C -0.155 4.155 7 C -0.173 4.173 8 C 0.054 3.946 9 H 0.128 0.872 10 N -0.369 5.369 11 C -0.069 4.069 12 C 0.400 3.600 13 O -0.451 6.451 14 N -0.315 5.315 15 C -0.080 4.080 16 C -0.111 4.111 17 C -0.248 4.248 18 C 0.084 3.916 19 C -0.476 4.476 20 H 0.109 0.891 21 C -0.134 4.134 22 N -0.433 5.433 23 Si 0.737 3.263 24 H -0.194 1.194 25 H -0.170 1.170 26 H -0.218 1.218 27 C -0.216 4.216 28 C -0.086 4.086 29 C -0.149 4.149 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.227 0.773 43 H 0.112 0.888 44 H 0.124 0.876 45 H 0.095 0.905 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.106 0.894 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -26.131 -12.675 2.284 29.133 hybrid contribution 0.133 -1.106 -1.048 1.530 sum -25.998 -13.781 1.236 29.451 Atomic orbital electron populations 1.21517 0.92301 1.02502 1.03220 1.23284 1.00120 0.95616 1.04810 1.86955 1.05459 1.12623 1.97920 1.24379 0.92398 1.01156 1.01273 0.88767 1.22717 0.96480 1.00123 0.96198 1.22578 0.95893 0.97774 1.01025 1.21467 0.86592 0.98660 0.87886 0.87164 1.47098 1.18490 1.43754 1.27513 1.21761 1.02081 0.92688 0.90321 1.15943 0.79701 0.81062 0.83289 1.90921 1.77356 1.38236 1.38620 1.42267 1.14824 1.49514 1.24942 1.16909 0.86669 1.09742 0.94653 1.20106 0.96566 0.99245 0.95197 1.20689 0.98063 1.08530 0.97499 1.17774 0.92098 0.90954 0.90724 1.19422 0.98674 1.16448 1.13046 0.89141 1.26137 0.96287 0.96425 0.94507 1.69735 1.19472 1.25709 1.28407 0.86363 0.82444 0.77126 0.80400 1.19417 1.17037 1.21808 1.20704 0.96095 1.07571 0.97256 1.20347 0.94227 0.98470 0.95552 1.22612 0.94598 0.94698 1.02989 0.91173 0.91670 0.91704 0.90292 0.90115 0.91509 0.90042 0.90841 0.90474 0.92817 0.90948 0.91406 0.77301 0.88755 0.87627 0.90524 0.87904 0.87710 0.89403 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 9.92 37.16 0.37 -0.31 16 2 C -0.09 -0.52 6.54 37.16 0.24 -0.27 16 3 S -0.26 -2.10 21.20 -107.50 -2.28 -4.38 16 4 C -0.06 -0.47 3.01 -24.67 -0.07 -0.54 16 5 H 0.09 0.64 6.09 -51.93 -0.32 0.32 16 6 C -0.12 -0.80 6.16 -25.07 -0.15 -0.95 16 7 C -0.13 -1.14 6.35 -25.61 -0.16 -1.30 16 8 C 0.16 1.71 3.34 -66.81 -0.22 1.49 16 9 H 0.11 1.46 6.97 -51.93 -0.36 1.10 16 10 N -0.63 -7.62 2.67 -178.38 -0.48 -8.10 16 11 C 0.08 0.62 9.38 59.85 0.56 1.19 16 12 C 0.70 11.92 7.99 -86.92 -0.69 11.22 16 13 O -0.57 -12.27 13.57 5.29 0.07 -12.20 16 14 N -0.67 -11.28 5.18 -14.10 -0.07 -11.35 16 15 C 0.01 0.28 6.22 -83.57 -0.52 -0.24 16 16 C -0.09 -1.95 9.90 -39.79 -0.39 -2.34 16 17 C -0.23 -5.50 7.29 -39.26 -0.29 -5.79 16 18 C 0.09 2.27 5.05 -106.80 -0.54 1.73 16 19 C -0.45 -12.26 9.53 -37.85 -0.36 -12.62 16 20 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 21 C 0.09 2.26 5.37 -17.34 -0.09 2.16 16 22 N -0.81 -21.71 13.93 55.55 0.77 -20.94 16 23 Si 0.91 21.22 24.73 -169.99 -4.20 17.01 16 24 H -0.27 -5.98 6.46 56.52 0.37 -5.62 16 25 H -0.25 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 27 C -0.20 -4.79 9.74 -39.26 -0.38 -5.18 16 28 C -0.07 -1.51 8.57 -39.79 -0.34 -1.85 16 29 C -0.11 -0.98 5.33 -25.01 -0.13 -1.11 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 37 H 0.07 0.66 7.46 -51.93 -0.39 0.27 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.39 7.96 -51.93 -0.41 -0.02 16 40 H 0.07 0.49 4.72 -51.92 -0.25 0.24 16 41 H 0.07 0.53 6.10 -51.93 -0.32 0.21 16 42 H 0.39 5.17 6.44 -40.82 -0.26 4.91 16 43 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.11 2.53 4.89 -52.49 -0.26 2.27 16 45 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 46 H 0.10 2.39 8.06 -52.49 -0.42 1.97 16 47 H 0.10 2.37 6.64 -52.48 -0.35 2.02 16 48 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 49 H 0.08 0.78 7.64 -51.93 -0.40 0.39 16 LS Contribution 392.12 15.07 5.91 5.91 Total: -1.00 -30.97 392.12 -11.00 -41.97 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -7.54 Total: 6.79 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -3.19 Total: -14.72 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.22 Total: -40.39 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.07 Total: -12.20 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.20 Total: 17.01 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -2.28 Total: -4.38 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.97 -11.00 -41.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089274946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.350 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds