Wall clock time and date at job start Tue Mar 31 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81402 * 109.46820 * 2 1 4 4 C 1.81405 * 102.99786 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.05593 * 306.41803 * 4 3 2 6 6 C 1.53877 * 110.03100 * 67.83547 * 4 3 2 7 7 C 1.54267 * 106.59966 * 119.28482 * 6 4 3 8 8 C 1.54889 * 104.19281 * 23.60653 * 7 6 4 9 9 H 1.09007 * 110.91076 * 80.44956 * 8 7 6 10 10 N 1.46507 * 110.75436 * 203.74217 * 8 7 6 11 11 C 1.46496 * 119.99739 * 53.33081 * 10 8 7 12 12 C 1.34776 * 119.99938 * 233.33356 * 10 8 7 13 13 O 1.21582 * 120.00200 * 359.97438 * 12 10 8 14 14 N 1.34774 * 119.99763 * 180.02562 * 12 10 8 15 15 C 1.39247 * 119.99836 * 175.38304 * 14 12 10 16 16 C 1.39483 * 119.83457 * 36.00965 * 15 14 12 17 17 C 1.36369 * 120.16799 * 179.72364 * 16 15 14 18 18 C 1.40866 * 119.83094 * 0.27499 * 17 16 15 19 19 C 1.41159 * 120.16594 * 180.02562 * 18 17 16 20 20 H 1.08007 * 119.99643 * 24.65495 * 19 18 17 21 21 C 1.39887 * 120.00127 * 204.64552 * 19 18 17 22 22 N 1.30882 * 120.00238 * 15.61164 * 21 19 18 23 23 Si 1.86799 * 119.99960 * 195.60636 * 21 19 18 24 24 H 1.48505 * 109.46984 * 90.00529 * 23 21 19 25 25 H 1.48508 * 109.47181 * 210.00180 * 23 21 19 26 26 H 1.48491 * 109.47233 * 330.00352 * 23 21 19 27 27 C 1.40871 * 119.67347 * 359.97438 * 18 17 16 28 28 C 1.36379 * 119.82390 * 0.02562 * 27 18 17 29 29 C 1.54263 * 110.03384 * 184.99932 * 4 3 2 30 30 H 1.08999 * 109.47433 * 59.99806 * 1 2 3 31 31 H 1.09003 * 109.46872 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47141 * 299.99972 * 1 2 3 33 33 H 1.09000 * 109.47141 * 240.00028 * 2 1 3 34 34 H 1.08996 * 109.46934 * 119.99637 * 2 1 3 35 35 H 1.09000 * 110.02911 * 238.56933 * 6 4 3 36 36 H 1.09001 * 110.03298 * 359.94612 * 6 4 3 37 37 H 1.09000 * 110.48373 * 264.93055 * 7 6 4 38 38 H 1.08993 * 110.48669 * 142.28607 * 7 6 4 39 39 H 1.09002 * 109.47111 * 269.99941 * 11 10 8 40 40 H 1.08991 * 109.47129 * 30.00070 * 11 10 8 41 41 H 1.09000 * 109.47098 * 150.00352 * 11 10 8 42 42 H 0.96999 * 120.00357 * 355.37832 * 14 12 10 43 43 H 1.07998 * 119.91260 * 359.97438 * 16 15 14 44 44 H 1.07997 * 120.08668 * 180.25257 * 17 16 15 45 45 H 0.97001 * 120.00300 * 179.97438 * 22 21 19 46 46 H 1.08001 * 120.09014 * 179.97438 * 27 18 17 47 47 H 1.07996 * 119.91035 * 179.97438 * 28 27 18 48 48 H 1.09007 * 110.48781 * 98.42534 * 29 4 3 49 49 H 1.09003 * 110.48495 * 335.78666 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5059 0.0008 5 1 4.2397 0.8599 0.8249 6 6 4.3999 0.9044 -1.3378 7 6 5.3528 1.9349 -1.9781 8 6 5.8753 2.7650 -0.7794 9 1 6.6792 2.2399 -0.2634 10 7 6.3217 4.0890 -1.2200 11 6 5.4224 4.9432 -1.9997 12 6 7.5596 4.5211 -0.9081 13 8 8.3057 3.8124 -0.2607 14 7 7.9700 5.7393 -1.3131 15 6 9.2113 6.2252 -0.9105 16 6 10.2902 5.3506 -0.7815 17 6 11.5103 5.8200 -0.3931 18 6 11.6779 7.1910 -0.1164 19 6 12.9378 7.6846 0.2856 20 1 13.8378 7.1530 0.0137 21 6 13.0207 8.8623 1.0360 22 7 11.9533 9.3404 1.6235 23 14 14.6547 9.7525 1.1996 24 1 14.7936 10.7387 0.0980 25 1 14.7054 10.4584 2.5052 26 1 15.7642 8.7683 1.1257 27 6 10.5823 8.0673 -0.2439 28 6 9.3683 7.5831 -0.6333 29 6 4.6248 2.8809 0.1272 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.9271 -0.0336 -1.1632 36 1 3.5414 0.7344 -1.9875 37 1 4.8111 2.5727 -2.6766 38 1 6.1776 1.4306 -2.4813 39 1 5.5620 4.7435 -3.0622 40 1 4.3897 4.7317 -1.7229 41 1 5.6466 5.9899 -1.7943 42 1 7.4008 6.2776 -1.8851 43 1 10.1600 4.2997 -0.9936 44 1 12.3457 5.1424 -0.2975 45 1 12.0109 10.1569 2.1441 46 1 10.7032 9.1196 -0.0330 47 1 8.5273 8.2535 -0.7310 48 1 4.9185 3.0671 1.1603 49 1 3.9657 3.6715 -0.2314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089274949.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:21 Heat of formation + Delta-G solvation = -11.657925 kcal Electronic energy + Delta-G solvation = -27554.096378 eV Core-core repulsion = 23799.778281 eV Total energy + Delta-G solvation = -3754.318097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.161 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.30937 -38.45164 -37.12425 -34.65540 -34.40053 -33.20343 -32.78608 -29.55618 -29.09701 -29.05051 -28.18604 -26.69268 -24.79386 -23.86038 -21.88237 -21.02049 -20.82203 -20.26535 -19.15428 -18.14411 -17.29280 -16.88529 -16.41969 -16.06176 -15.58413 -15.28005 -15.12624 -15.08632 -14.73296 -13.99448 -13.92620 -13.60005 -13.43813 -13.13742 -12.82086 -12.76218 -12.68217 -12.49492 -12.33206 -12.04518 -11.98855 -11.81731 -11.74962 -11.58904 -11.38953 -11.22130 -11.09456 -11.07704 -10.96175 -10.74092 -10.69566 -10.08090 -10.03216 -9.54498 -9.42296 -9.12185 -8.85988 -8.52966 -7.98161 -7.48142 -6.92250 -6.68745 -4.26032 1.32502 2.23702 2.68469 2.88834 3.08949 3.13165 3.13808 3.20133 3.67490 3.95992 4.19541 4.25303 4.45601 4.49272 4.55169 4.64825 4.67671 4.94695 4.96937 5.04593 5.09197 5.14588 5.21205 5.24065 5.29052 5.35886 5.40787 5.52690 5.59581 5.64597 5.71979 5.74434 5.82116 5.95574 6.02964 6.24388 6.48878 6.54399 6.83919 6.94986 7.08921 7.15210 7.32132 7.39604 7.66941 7.91583 8.00645 8.10303 8.33915 8.48531 8.65408 8.93586 8.95821 9.14473 10.22513 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.031733 B = 0.001745 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.152037 B =16044.084941 C =16157.818052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 S -0.260 6.260 4 C -0.054 4.054 5 H 0.091 0.909 6 C -0.117 4.117 7 C -0.131 4.131 8 C 0.161 3.839 9 H 0.112 0.888 10 N -0.629 5.629 11 C 0.077 3.923 12 C 0.697 3.303 13 O -0.577 6.577 14 N -0.664 5.664 15 C 0.008 3.992 16 C -0.076 4.076 17 C -0.216 4.216 18 C 0.103 3.897 19 C -0.457 4.457 20 H 0.077 0.923 21 C 0.073 3.927 22 N -0.796 5.796 23 Si 0.910 3.090 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.262 1.262 27 C -0.153 4.153 28 C -0.115 4.115 29 C -0.114 4.114 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.391 0.609 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.280 0.720 46 H 0.124 0.876 47 H 0.088 0.912 48 H 0.080 0.920 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.454 -13.001 -6.176 25.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.240 4.240 3 S -0.032 6.032 4 C -0.183 4.183 5 H 0.109 0.891 6 C -0.157 4.157 7 C -0.170 4.170 8 C 0.055 3.945 9 H 0.130 0.870 10 N -0.367 5.367 11 C -0.067 4.067 12 C 0.400 3.600 13 O -0.454 6.454 14 N -0.311 5.311 15 C -0.084 4.084 16 C -0.096 4.096 17 C -0.236 4.236 18 C 0.100 3.900 19 C -0.487 4.487 20 H 0.096 0.904 21 C -0.144 4.144 22 N -0.422 5.422 23 Si 0.734 3.266 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.186 1.186 27 C -0.173 4.173 28 C -0.136 4.136 29 C -0.153 4.153 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.226 0.774 43 H 0.125 0.875 44 H 0.112 0.888 45 H 0.090 0.910 46 H 0.142 0.858 47 H 0.107 0.893 48 H 0.099 0.901 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.601 -12.388 -5.507 24.661 hybrid contribution 0.913 -0.355 -0.020 0.980 sum -19.688 -12.742 -5.527 24.094 Atomic orbital electron populations 1.21513 0.92332 1.02460 1.03192 1.23306 1.00077 0.95716 1.04855 1.86959 1.05734 1.12661 1.97886 1.23713 0.92497 1.01028 1.01064 0.89075 1.22497 0.99797 0.98674 0.94753 1.22685 0.98858 0.97457 0.98004 1.21824 0.96065 0.82643 0.93984 0.87017 1.46928 1.13483 1.17758 1.58520 1.21678 0.94863 0.94629 0.95513 1.15969 0.81296 0.82704 0.80074 1.90889 1.53688 1.56067 1.44767 1.42237 1.19484 1.17026 1.52344 1.17011 0.83367 0.93112 1.14943 1.20379 0.91668 0.98009 0.99570 1.20661 0.96109 0.95139 1.11702 1.17676 0.93308 0.90449 0.88545 1.19564 0.93818 1.06260 1.29062 0.90442 1.25916 0.98209 0.96775 0.93482 1.69843 1.30239 1.19175 1.22918 0.86288 0.82253 0.79820 0.78196 1.19335 1.20371 1.18648 1.20942 0.92176 1.00196 1.03995 1.20224 0.97645 0.92884 1.02801 1.22580 0.96459 0.94691 1.01608 0.91710 0.91214 0.91709 0.90138 0.90233 0.91068 0.90526 0.90757 0.90841 0.92809 0.90835 0.91365 0.77423 0.87542 0.88800 0.90958 0.85844 0.89344 0.90111 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.92 37.16 0.37 -0.37 16 2 C -0.09 -0.58 6.54 37.16 0.24 -0.34 16 3 S -0.26 -2.30 20.69 -107.50 -2.22 -4.52 16 4 C -0.05 -0.46 3.42 -25.61 -0.09 -0.55 16 5 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 6 C -0.12 -0.90 6.36 -25.61 -0.16 -1.06 16 7 C -0.13 -1.19 6.37 -25.07 -0.16 -1.35 16 8 C 0.16 1.89 3.31 -65.94 -0.22 1.67 16 9 H 0.11 1.58 7.00 -51.93 -0.36 1.21 16 10 N -0.63 -8.45 2.89 -177.39 -0.51 -8.96 16 11 C 0.08 0.74 8.81 59.84 0.53 1.27 16 12 C 0.70 12.86 8.11 -86.92 -0.70 12.16 16 13 O -0.58 -13.01 13.17 5.29 0.07 -12.94 16 14 N -0.66 -12.23 5.14 -14.10 -0.07 -12.30 16 15 C 0.01 0.19 6.29 -83.57 -0.53 -0.34 16 16 C -0.08 -1.88 8.61 -39.79 -0.34 -2.22 16 17 C -0.22 -5.60 9.74 -39.26 -0.38 -5.98 16 18 C 0.10 2.80 5.58 -106.80 -0.60 2.21 16 19 C -0.46 -12.30 9.05 -37.86 -0.34 -12.65 16 20 H 0.08 2.01 7.89 -52.48 -0.41 1.59 16 21 C 0.07 1.85 5.18 -17.34 -0.09 1.76 16 22 N -0.80 -20.75 10.83 55.54 0.60 -20.15 16 23 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 27 C -0.15 -3.99 8.64 -39.26 -0.34 -4.33 16 28 C -0.12 -2.68 9.90 -39.79 -0.39 -3.08 16 29 C -0.11 -1.16 5.93 -25.08 -0.15 -1.31 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.46 7.92 -51.92 -0.41 0.05 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.55 7.37 -51.93 -0.38 0.17 16 37 H 0.07 0.64 7.05 -51.93 -0.37 0.27 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.45 8.10 -51.93 -0.42 0.03 16 40 H 0.07 0.60 6.37 -51.93 -0.33 0.27 16 41 H 0.07 0.63 6.43 -51.93 -0.33 0.30 16 42 H 0.39 5.76 6.62 -40.82 -0.27 5.49 16 43 H 0.11 2.62 6.26 -52.49 -0.33 2.29 16 44 H 0.09 2.32 8.06 -52.49 -0.42 1.89 16 45 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 46 H 0.12 3.29 6.07 -52.49 -0.32 2.97 16 47 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 48 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 49 H 0.08 0.83 6.03 -51.93 -0.31 0.52 16 LS Contribution 398.05 15.07 6.00 6.00 Total: -1.00 -31.03 398.05 -12.14 -43.17 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -7.62 Total: 10.41 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -3.36 Total: -14.51 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.02 Total: -41.41 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.07 Total: -12.94 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -2.22 Total: -4.52 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.03 -12.14 -43.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089274949.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.516 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds