Wall clock time and date at job start Tue Mar 31 2020 05:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81402 * 109.46820 * 2 1 4 4 C 1.81405 * 102.99786 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.05593 * 306.41803 * 4 3 2 6 6 C 1.53877 * 110.03100 * 67.83547 * 4 3 2 7 7 C 1.54267 * 106.59966 * 119.28482 * 6 4 3 8 8 C 1.54889 * 104.19281 * 23.60653 * 7 6 4 9 9 H 1.09007 * 110.91076 * 80.44956 * 8 7 6 10 10 N 1.46507 * 110.75436 * 203.74217 * 8 7 6 11 11 C 1.46496 * 119.99739 * 53.33081 * 10 8 7 12 12 C 1.34776 * 119.99938 * 233.33356 * 10 8 7 13 13 O 1.21582 * 120.00200 * 359.97438 * 12 10 8 14 14 N 1.34774 * 119.99763 * 180.02562 * 12 10 8 15 15 C 1.39247 * 119.99836 * 175.38304 * 14 12 10 16 16 C 1.39483 * 119.83457 * 36.00965 * 15 14 12 17 17 C 1.36369 * 120.16799 * 179.72364 * 16 15 14 18 18 C 1.40866 * 119.83094 * 0.27499 * 17 16 15 19 19 C 1.41159 * 120.16594 * 180.02562 * 18 17 16 20 20 H 1.08007 * 119.99643 * 24.65495 * 19 18 17 21 21 C 1.39887 * 120.00127 * 204.64552 * 19 18 17 22 22 N 1.30882 * 120.00238 * 15.61164 * 21 19 18 23 23 Si 1.86799 * 119.99960 * 195.60636 * 21 19 18 24 24 H 1.48505 * 109.46984 * 90.00529 * 23 21 19 25 25 H 1.48508 * 109.47181 * 210.00180 * 23 21 19 26 26 H 1.48491 * 109.47233 * 330.00352 * 23 21 19 27 27 C 1.40871 * 119.67347 * 359.97438 * 18 17 16 28 28 C 1.36379 * 119.82390 * 0.02562 * 27 18 17 29 29 C 1.54263 * 110.03384 * 184.99932 * 4 3 2 30 30 H 1.08999 * 109.47433 * 59.99806 * 1 2 3 31 31 H 1.09003 * 109.46872 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47141 * 299.99972 * 1 2 3 33 33 H 1.09000 * 109.47141 * 240.00028 * 2 1 3 34 34 H 1.08996 * 109.46934 * 119.99637 * 2 1 3 35 35 H 1.09000 * 110.02911 * 238.56933 * 6 4 3 36 36 H 1.09001 * 110.03298 * 359.94612 * 6 4 3 37 37 H 1.09000 * 110.48373 * 264.93055 * 7 6 4 38 38 H 1.08993 * 110.48669 * 142.28607 * 7 6 4 39 39 H 1.09002 * 109.47111 * 269.99941 * 11 10 8 40 40 H 1.08991 * 109.47129 * 30.00070 * 11 10 8 41 41 H 1.09000 * 109.47098 * 150.00352 * 11 10 8 42 42 H 0.96999 * 120.00357 * 355.37832 * 14 12 10 43 43 H 1.07998 * 119.91260 * 359.97438 * 16 15 14 44 44 H 1.07997 * 120.08668 * 180.25257 * 17 16 15 45 45 H 0.97001 * 120.00300 * 179.97438 * 22 21 19 46 46 H 1.08001 * 120.09014 * 179.97438 * 27 18 17 47 47 H 1.07996 * 119.91035 * 179.97438 * 28 27 18 48 48 H 1.09007 * 110.48781 * 98.42534 * 29 4 3 49 49 H 1.09003 * 110.48495 * 335.78666 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5059 0.0008 5 1 4.2397 0.8599 0.8249 6 6 4.3999 0.9044 -1.3378 7 6 5.3528 1.9349 -1.9781 8 6 5.8753 2.7650 -0.7794 9 1 6.6792 2.2399 -0.2634 10 7 6.3217 4.0890 -1.2200 11 6 5.4224 4.9432 -1.9997 12 6 7.5596 4.5211 -0.9081 13 8 8.3057 3.8124 -0.2607 14 7 7.9700 5.7393 -1.3131 15 6 9.2113 6.2252 -0.9105 16 6 10.2902 5.3506 -0.7815 17 6 11.5103 5.8200 -0.3931 18 6 11.6779 7.1910 -0.1164 19 6 12.9378 7.6846 0.2856 20 1 13.8378 7.1530 0.0137 21 6 13.0207 8.8623 1.0360 22 7 11.9533 9.3404 1.6235 23 14 14.6547 9.7525 1.1996 24 1 14.7936 10.7387 0.0980 25 1 14.7054 10.4584 2.5052 26 1 15.7642 8.7683 1.1257 27 6 10.5823 8.0673 -0.2439 28 6 9.3683 7.5831 -0.6333 29 6 4.6248 2.8809 0.1272 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.9271 -0.0336 -1.1632 36 1 3.5414 0.7344 -1.9875 37 1 4.8111 2.5727 -2.6766 38 1 6.1776 1.4306 -2.4813 39 1 5.5620 4.7435 -3.0622 40 1 4.3897 4.7317 -1.7229 41 1 5.6466 5.9899 -1.7943 42 1 7.4008 6.2776 -1.8851 43 1 10.1600 4.2997 -0.9936 44 1 12.3457 5.1424 -0.2975 45 1 12.0109 10.1569 2.1441 46 1 10.7032 9.1196 -0.0330 47 1 8.5273 8.2535 -0.7310 48 1 4.9185 3.0671 1.1603 49 1 3.9657 3.6715 -0.2314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089274949.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:20 Heat of formation + Delta-G solvation = -26.700966 kcal Electronic energy + Delta-G solvation = -27554.748693 eV Core-core repulsion = 23799.778281 eV Total energy + Delta-G solvation = -3754.970412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.161 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.67494 -39.76116 -38.69044 -36.18681 -35.82897 -34.52822 -33.64910 -31.46590 -30.80588 -29.85126 -29.22221 -27.78640 -26.52448 -24.41906 -23.50442 -22.78425 -21.73219 -21.52458 -20.38878 -19.51807 -19.19195 -18.08326 -17.58230 -17.06392 -16.81337 -16.59266 -16.50949 -15.82130 -15.70612 -15.50892 -15.11255 -14.83573 -14.52709 -14.50231 -14.22782 -13.96066 -13.77791 -13.60898 -13.43735 -13.32704 -13.07170 -13.01128 -12.83479 -12.75582 -12.68262 -12.45777 -12.40817 -12.34284 -12.05021 -11.80036 -11.69289 -11.56599 -11.43393 -11.18492 -10.95657 -10.71242 -10.65203 -9.66501 -9.44680 -8.80945 -8.65267 -8.57338 -6.26449 0.69568 0.86299 1.16698 1.40069 1.49343 1.53595 1.62692 1.67671 2.16659 2.23409 2.76741 3.04361 3.44068 3.58597 3.74799 3.84406 4.05350 4.10578 4.15800 4.24881 4.31658 4.37052 4.40518 4.41708 4.51408 4.55286 4.55518 4.64012 4.75428 4.85788 4.88604 4.92887 4.93416 5.01490 5.04043 5.12272 5.16727 5.18129 5.22332 5.24998 5.31300 5.46343 5.56088 5.67795 5.83123 6.05493 6.11446 6.18202 6.39800 6.67525 6.94858 7.01784 7.02985 7.63751 8.35334 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.031733 B = 0.001745 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.152037 B =16044.084941 C =16157.818052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.083 4.083 3 S -0.293 6.293 4 C -0.046 4.046 5 H 0.092 0.908 6 C -0.109 4.109 7 C -0.121 4.121 8 C 0.153 3.847 9 H 0.082 0.918 10 N -0.618 5.618 11 C 0.068 3.932 12 C 0.692 3.308 13 O -0.625 6.625 14 N -0.657 5.657 15 C 0.024 3.976 16 C -0.087 4.087 17 C -0.233 4.233 18 C 0.072 3.928 19 C -0.495 4.495 20 H 0.074 0.926 21 C 0.034 3.966 22 N -0.826 5.826 23 Si 0.986 3.014 24 H -0.259 1.259 25 H -0.268 1.268 26 H -0.261 1.261 27 C -0.170 4.170 28 C -0.113 4.113 29 C -0.106 4.106 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.412 0.588 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.289 0.711 46 H 0.114 0.886 47 H 0.122 0.878 48 H 0.064 0.936 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.547 -13.160 -7.236 27.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.231 4.231 3 S -0.065 6.065 4 C -0.176 4.176 5 H 0.110 0.890 6 C -0.148 4.148 7 C -0.160 4.160 8 C 0.048 3.952 9 H 0.100 0.900 10 N -0.354 5.354 11 C -0.074 4.074 12 C 0.395 3.605 13 O -0.505 6.505 14 N -0.306 5.306 15 C -0.070 4.070 16 C -0.107 4.107 17 C -0.253 4.253 18 C 0.069 3.931 19 C -0.525 4.525 20 H 0.092 0.908 21 C -0.181 4.181 22 N -0.452 5.452 23 Si 0.807 3.193 24 H -0.183 1.183 25 H -0.193 1.193 26 H -0.185 1.185 27 C -0.190 4.190 28 C -0.133 4.133 29 C -0.146 4.146 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.250 0.750 43 H 0.122 0.878 44 H 0.111 0.889 45 H 0.099 0.901 46 H 0.132 0.868 47 H 0.140 0.860 48 H 0.082 0.918 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.781 -12.557 -6.607 26.839 hybrid contribution 1.358 -0.428 0.294 1.453 sum -21.424 -12.984 -6.313 25.834 Atomic orbital electron populations 1.21524 0.91605 1.03470 1.02746 1.23382 1.00550 0.93557 1.05647 1.87065 1.05914 1.15561 1.97977 1.23611 0.92317 0.99859 1.01766 0.88989 1.22460 0.99833 0.98444 0.94109 1.22620 0.99039 0.97433 0.96927 1.21938 0.95723 0.81983 0.95588 0.89988 1.46950 1.12080 1.18610 1.57784 1.21990 0.94978 0.94248 0.96137 1.16169 0.82495 0.82122 0.79760 1.90861 1.55598 1.57248 1.46810 1.42015 1.18320 1.17477 1.52787 1.17040 0.84552 0.92784 1.12638 1.20468 0.91993 0.98222 1.00063 1.20778 0.96828 0.95074 1.12668 1.18002 0.94285 0.91107 0.89658 1.19790 0.93713 1.08062 1.30886 0.90830 1.26765 1.02179 0.96787 0.92348 1.69882 1.32372 1.19773 1.23222 0.85148 0.77129 0.78382 0.78678 1.18331 1.19251 1.18528 1.20952 0.93118 0.99696 1.05219 1.20471 0.97751 0.93560 1.01514 1.22464 0.95827 0.96081 1.00217 0.91938 0.89404 0.92382 0.88983 0.89784 0.90143 0.89312 0.89488 0.91179 0.90704 0.88814 0.90732 0.75002 0.87835 0.88935 0.90070 0.86807 0.85980 0.91761 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.92 71.98 0.71 -0.45 16 2 C -0.08 -0.87 6.54 71.98 0.47 -0.40 16 3 S -0.29 -4.64 20.69 -56.49 -1.17 -5.81 16 4 C -0.05 -0.72 3.42 31.32 0.11 -0.62 16 5 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 6 C -0.11 -1.41 6.36 31.32 0.20 -1.21 16 7 C -0.12 -1.96 6.37 31.67 0.20 -1.76 16 8 C 0.15 3.49 3.31 46.28 0.15 3.64 16 9 H 0.08 2.39 7.00 -2.38 -0.02 2.37 16 10 N -0.62 -15.79 2.89 -833.39 -2.41 -18.20 16 11 C 0.07 1.11 8.81 127.77 1.13 2.24 16 12 C 0.69 25.29 8.11 179.06 1.45 26.74 16 13 O -0.62 -28.86 13.17 -3.97 -0.05 -28.91 16 14 N -0.66 -23.44 5.14 -316.78 -1.63 -25.07 16 15 C 0.02 1.09 6.29 38.56 0.24 1.33 16 16 C -0.09 -4.43 8.61 22.13 0.19 -4.24 16 17 C -0.23 -12.64 9.74 22.48 0.22 -12.42 16 18 C 0.07 4.07 5.58 -21.27 -0.12 3.96 16 19 C -0.50 -27.61 9.05 23.39 0.21 -27.40 16 20 H 0.07 3.98 7.89 -2.91 -0.02 3.96 16 21 C 0.03 1.72 5.18 85.23 0.44 2.16 16 22 N -0.83 -43.73 10.83 21.82 0.24 -43.50 16 23 Si 0.99 38.82 29.59 68.60 2.03 40.84 16 24 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 25 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 26 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 27 C -0.17 -9.03 8.64 22.48 0.19 -8.84 16 28 C -0.11 -5.20 9.90 22.14 0.22 -4.98 16 29 C -0.11 -2.08 5.93 31.66 0.19 -1.89 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.09 0.77 7.92 -2.39 -0.02 0.75 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 0.99 7.37 -2.39 -0.02 0.98 16 37 H 0.09 1.21 7.05 -2.39 -0.02 1.19 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 0.98 8.10 -2.39 -0.02 0.96 16 40 H 0.09 1.21 6.37 -2.39 -0.02 1.19 16 41 H 0.07 1.15 6.43 -2.39 -0.02 1.14 16 42 H 0.41 11.16 6.62 -92.71 -0.61 10.54 16 43 H 0.10 5.28 6.26 -2.91 -0.02 5.26 16 44 H 0.09 4.84 8.06 -2.91 -0.02 4.82 16 45 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 46 H 0.11 6.21 6.07 -2.91 -0.02 6.19 16 47 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 48 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 49 H 0.09 1.60 6.03 -2.39 -0.01 1.59 16 Total: -1.00 -70.18 398.05 3.56 -66.61 By element: Atomic # 1 Polarization: 37.81 SS G_CDS: 0.34 Total: 38.16 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 6.21 Total: -24.12 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -3.80 Total: -86.77 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.05 Total: -28.91 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.84 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -1.17 Total: -5.81 kcal Total: -70.18 3.56 -66.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089274949.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.911 kcal (2) G-P(sol) polarization free energy of solvation -70.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds