Wall clock time and date at job start Tue Mar 31 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31808 * 120.82849 * 2 1 4 4 C 1.32485 * 121.62519 * 180.27373 * 3 2 1 5 5 C 1.50699 * 118.57438 * 179.71132 * 4 3 2 6 6 N 1.46902 * 109.46871 * 276.36214 * 5 4 3 7 7 C 1.46896 * 111.00024 * 292.14378 * 6 5 4 8 8 C 1.50705 * 109.46973 * 298.84730 * 7 6 5 9 9 H 1.07996 * 120.00057 * 4.24427 * 8 7 6 10 10 C 1.37882 * 119.99903 * 184.23629 * 8 7 6 11 11 N 1.31514 * 120.00016 * 354.77735 * 10 8 7 12 12 Si 1.86793 * 120.00052 * 174.77445 * 10 8 7 13 13 H 1.48500 * 109.47309 * 65.00323 * 12 10 8 14 14 H 1.48500 * 109.47186 * 185.00165 * 12 10 8 15 15 H 1.48498 * 109.47209 * 305.00241 * 12 10 8 16 16 C 1.46902 * 110.99749 * 168.18978 * 6 5 4 17 17 C 1.50695 * 109.47279 * 189.99950 * 16 6 5 18 18 C 1.38676 * 120.41918 * 90.00153 * 17 16 6 19 19 C 1.38627 * 118.41834 * 180.02562 * 18 17 16 20 20 C 1.38221 * 119.16509 * 0.24482 * 19 18 17 21 21 N 1.31858 * 120.76311 * 359.50926 * 20 19 18 22 22 C 1.31886 * 121.72322 * 0.48077 * 21 20 19 23 23 N 1.31162 * 122.85465 * 359.43789 * 4 3 2 24 24 C 1.33852 * 120.25041 * 0.27022 * 23 4 3 25 25 C 1.40259 * 122.05543 * 180.02562 * 24 23 4 26 26 C 1.36221 * 119.58610 * 179.97438 * 25 24 23 27 27 C 1.39354 * 121.09445 * 0.02562 * 26 25 24 28 28 C 1.36216 * 120.96555 * 359.97438 * 27 26 25 29 29 C 1.40284 * 119.47785 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.47228 * 270.27565 * 1 2 3 31 31 H 1.09003 * 109.46620 * 30.26978 * 1 2 3 32 32 H 1.08999 * 109.47255 * 150.26875 * 1 2 3 33 33 H 1.08999 * 109.47233 * 156.36057 * 5 4 3 34 34 H 1.08998 * 109.47012 * 36.36095 * 5 4 3 35 35 H 1.08999 * 109.47176 * 58.85107 * 7 6 5 36 36 H 1.09008 * 109.47031 * 178.85516 * 7 6 5 37 37 H 0.96999 * 120.00451 * 179.97438 * 11 10 8 38 38 H 1.09003 * 109.47406 * 70.00067 * 16 6 5 39 39 H 1.08996 * 109.47487 * 310.00193 * 16 6 5 40 40 H 1.07995 * 120.78666 * 359.97438 * 18 17 16 41 41 H 1.08001 * 120.41680 * 179.97438 * 19 18 17 42 42 H 1.08002 * 119.62093 * 179.75072 * 20 19 18 43 43 H 1.07999 * 119.61699 * 179.75581 * 22 21 20 44 44 H 1.08001 * 120.20917 * 359.96131 * 25 24 23 45 45 H 1.08001 * 119.45036 * 179.97438 * 26 25 24 46 46 H 1.08001 * 119.51192 * 180.02562 * 27 26 25 47 47 H 1.07995 * 120.26203 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1825 1.1318 0.0000 4 6 3.5072 1.1503 -0.0054 5 6 4.2095 2.4836 -0.0117 6 7 4.2964 2.9847 -1.3898 7 6 5.1991 2.1529 -2.1966 8 6 6.5842 2.1942 -1.6040 9 1 6.7602 2.7235 -0.6792 10 6 7.6265 1.5562 -2.2424 11 7 7.3947 0.8264 -3.3116 12 14 9.3678 1.7284 -1.5886 13 1 9.4565 1.1015 -0.2453 14 1 10.3129 1.0526 -2.5135 15 1 9.7184 3.1678 -1.4873 16 6 4.7163 4.3923 -1.4126 17 6 4.5588 4.9410 -2.8073 18 6 3.3679 5.5343 -3.1981 19 6 3.2681 6.0245 -4.4909 20 6 4.3495 5.9021 -5.3431 21 7 5.4685 5.3360 -4.9356 22 6 5.5992 4.8589 -3.7130 23 7 4.2341 0.0585 -0.0002 24 6 3.6453 -1.1436 0.0055 25 6 4.3854 -2.3350 0.0117 26 6 3.7340 -3.5314 0.0179 27 6 2.3418 -3.5928 0.0177 28 6 1.5901 -2.4569 0.0118 29 6 2.2276 -1.2073 0.0064 30 1 -0.3633 0.0049 1.0276 31 1 -0.3633 0.8876 -0.5180 32 1 -0.3634 -0.8924 -0.5096 33 1 5.2134 2.3674 0.3966 34 1 3.6491 3.1923 0.5980 35 1 4.8372 1.1248 -2.2031 36 1 5.2293 2.5340 -3.2174 37 1 8.1280 0.3778 -3.7610 38 1 5.7608 4.4649 -1.1095 39 1 4.0974 4.9673 -0.7240 40 1 2.5376 5.6117 -2.5118 41 1 2.3555 6.4924 -4.8294 42 1 4.2785 6.2778 -6.3531 43 1 6.5299 4.3983 -3.4164 44 1 5.4649 -2.3041 0.0113 45 1 4.3061 -4.4474 0.0222 46 1 1.8518 -4.5553 0.0231 47 1 0.5119 -2.5178 0.0121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089568325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:31 Heat of formation + Delta-G solvation = 113.503422 kcal Electronic energy + Delta-G solvation = -30147.591370 eV Core-core repulsion = 26295.549476 eV Total energy + Delta-G solvation = -3852.041894 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.165 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.11319 -39.67848 -37.81027 -36.56953 -34.63572 -32.62918 -32.24616 -31.53290 -30.97028 -30.27703 -28.48261 -27.41906 -26.71960 -24.40916 -23.75359 -23.11690 -22.80372 -21.69230 -21.11258 -19.84669 -18.16079 -17.66842 -16.70428 -16.35008 -15.86172 -15.74434 -15.38641 -15.02412 -14.55871 -14.54409 -14.38716 -14.14912 -13.93287 -13.63913 -13.15379 -13.08884 -12.96760 -12.54369 -12.41294 -12.38124 -12.26645 -12.22651 -11.85663 -11.56674 -11.40343 -11.24465 -10.92623 -10.84656 -10.80296 -10.49648 -10.36803 -10.14207 -9.98615 -9.64038 -9.28326 -9.00099 -8.87603 -8.74264 -8.45744 -8.33584 -8.09897 -7.25281 -5.95972 -4.03051 0.47279 0.96321 1.64201 1.81534 2.11374 3.15714 3.33135 3.38519 3.40171 4.11945 4.27133 4.39479 4.44325 4.46354 4.52469 4.74400 4.91321 4.97661 5.12224 5.21700 5.23780 5.32709 5.35292 5.39402 5.46674 5.47874 5.48268 5.49685 5.64415 5.75553 5.84358 5.94648 5.99407 6.00456 6.05390 6.20344 6.23892 6.35883 6.39595 6.46294 6.51529 6.57452 6.72429 6.88171 6.89535 7.16086 7.30482 7.47081 7.57682 7.90868 7.97917 8.15986 8.30930 8.54189 8.63894 9.02426 9.61724 11.09934 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.008948 B = 0.004093 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.335944 B = 6839.917284 C = 9014.894733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.206 3.794 3 N -0.508 5.508 4 C 0.352 3.648 5 C 0.124 3.876 6 N -0.529 5.529 7 C 0.185 3.815 8 C -0.540 4.540 9 H 0.056 0.944 10 C 0.073 3.927 11 N -0.885 5.885 12 Si 0.882 3.118 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.276 1.276 16 C 0.103 3.897 17 C -0.110 4.110 18 C -0.065 4.065 19 C -0.187 4.187 20 C 0.083 3.917 21 N -0.490 5.490 22 C 0.127 3.873 23 N -0.472 5.472 24 C 0.165 3.835 25 C -0.090 4.090 26 C -0.093 4.093 27 C -0.129 4.129 28 C -0.081 4.081 29 C -0.170 4.170 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.030 0.970 36 H 0.035 0.965 37 H 0.261 0.739 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.145 0.855 43 H 0.166 0.834 44 H 0.140 0.860 45 H 0.129 0.871 46 H 0.125 0.875 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.802 -1.664 6.240 15.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.046 3.954 3 N -0.222 5.222 4 C 0.083 3.917 5 C -0.005 4.005 6 N -0.254 5.254 7 C 0.060 3.940 8 C -0.579 4.579 9 H 0.074 0.926 10 C -0.131 4.131 11 N -0.523 5.523 12 Si 0.710 3.290 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.202 1.202 16 C -0.026 4.026 17 C -0.112 4.112 18 C -0.091 4.091 19 C -0.207 4.207 20 C -0.074 4.074 21 N -0.199 5.199 22 C -0.030 4.030 23 N -0.186 5.186 24 C 0.036 3.964 25 C -0.108 4.108 26 C -0.115 4.115 27 C -0.147 4.147 28 C -0.102 4.102 29 C -0.175 4.175 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.162 0.838 43 H 0.183 0.817 44 H 0.158 0.842 45 H 0.147 0.853 46 H 0.143 0.857 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.828 -0.996 5.311 13.920 hybrid contribution 0.742 -0.939 1.008 1.565 sum -12.086 -1.936 6.319 13.775 Atomic orbital electron populations 1.20765 0.87984 1.04050 1.03420 1.22023 0.96986 0.87424 0.88998 1.67983 1.10187 1.29771 1.14284 1.23040 0.85310 0.94723 0.88595 1.20657 0.98784 0.88508 0.92575 1.62551 1.52214 1.01572 1.09050 1.19841 0.88777 0.92461 0.92908 1.21458 0.94003 1.33944 1.08496 0.92618 1.24848 0.98604 0.94732 0.94886 1.69946 1.31920 1.30750 1.19647 0.86821 0.85091 0.78306 0.78804 1.20419 1.21381 1.20169 1.20792 1.00408 0.89682 0.91668 1.20793 0.94401 0.98072 0.97955 1.21413 0.96838 0.95081 0.95775 1.21984 1.00169 1.03391 0.95196 1.22639 0.89160 0.96212 0.99389 1.67745 1.25338 1.09486 1.17296 1.23047 0.99527 0.92750 0.87723 1.68851 1.39390 0.97358 1.12959 1.19093 0.89627 0.93123 0.94582 1.20874 1.00944 0.90066 0.98950 1.20969 0.94553 0.97832 0.98105 1.20889 0.94016 0.98454 1.01306 1.20891 0.99804 0.91023 0.98444 1.19399 0.95461 0.95690 1.06937 0.89734 0.89592 0.90269 0.90650 0.90386 0.95225 0.94736 0.92912 0.92155 0.91620 0.85384 0.85710 0.83764 0.81738 0.84212 0.85315 0.85660 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 9.80 36.01 0.35 -0.71 16 2 C 0.21 3.19 6.90 -81.71 -0.56 2.63 16 3 N -0.51 -9.32 10.22 -6.60 -0.07 -9.38 16 4 C 0.35 7.17 6.29 -157.14 -0.99 6.19 16 5 C 0.12 2.45 5.19 -4.98 -0.03 2.42 16 6 N -0.53 -11.12 4.68 -238.96 -1.12 -12.24 16 7 C 0.19 4.71 4.58 -4.98 -0.02 4.69 16 8 C -0.54 -14.18 7.19 -34.44 -0.25 -14.43 16 9 H 0.06 1.43 5.91 -52.49 -0.31 1.12 16 10 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 11 N -0.88 -25.98 13.29 55.43 0.74 -25.24 16 12 Si 0.88 21.31 29.54 -169.99 -5.02 16.29 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 C 0.10 1.89 4.96 -4.98 -0.02 1.86 16 17 C -0.11 -2.02 4.90 -104.48 -0.51 -2.54 16 18 C -0.06 -1.02 9.86 -39.28 -0.39 -1.41 16 19 C -0.19 -2.73 10.11 -39.44 -0.40 -3.13 16 20 C 0.08 1.34 11.18 -17.55 -0.20 1.14 16 21 N -0.49 -9.68 10.36 -13.25 -0.14 -9.82 16 22 C 0.13 2.59 9.10 -17.55 -0.16 2.43 16 23 N -0.47 -10.18 9.67 -8.75 -0.08 -10.27 16 24 C 0.16 3.09 6.62 -84.82 -0.56 2.53 16 25 C -0.09 -1.46 10.01 -39.55 -0.40 -1.86 16 26 C -0.09 -1.16 9.95 -39.89 -0.40 -1.56 16 27 C -0.13 -1.41 9.95 -39.89 -0.40 -1.81 16 28 C -0.08 -0.97 9.34 -39.54 -0.37 -1.33 16 29 C -0.17 -2.69 5.74 -106.83 -0.61 -3.30 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.63 6.58 -51.93 -0.34 0.29 16 33 H 0.08 1.60 6.24 -51.93 -0.32 1.28 16 34 H 0.08 1.32 7.89 -51.93 -0.41 0.91 16 35 H 0.03 0.86 6.83 -51.93 -0.35 0.51 16 36 H 0.03 0.96 5.98 -51.92 -0.31 0.65 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.06 1.18 6.52 -51.93 -0.34 0.84 16 39 H 0.07 1.02 7.86 -51.93 -0.41 0.61 16 40 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.14 1.86 8.06 -52.49 -0.42 1.43 16 43 H 0.17 3.71 7.80 -52.49 -0.41 3.30 16 44 H 0.14 2.31 8.06 -52.49 -0.42 1.89 16 45 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 46 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.13 1.10 6.53 -52.49 -0.34 0.76 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -33.26 387.29 -11.93 -45.19 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.07 Total: 5.92 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -6.00 Total: -6.28 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: -0.67 Total: -66.96 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.26 -11.93 -45.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089568325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.693 kcal (2) G-P(sol) polarization free energy of solvation -33.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds