Wall clock time and date at job start Tue Mar 31 2020 05:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31341 * 1 3 3 Si 1.86791 * 120.00113 * 2 1 4 4 H 1.48503 * 109.47369 * 269.99745 * 3 2 1 5 5 H 1.48498 * 109.47090 * 29.99854 * 3 2 1 6 6 H 1.48505 * 109.47201 * 149.99900 * 3 2 1 7 7 C 1.39031 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99855 * 166.18327 * 7 2 1 9 9 N 1.36858 * 120.00157 * 346.19057 * 7 2 1 10 10 C 1.34778 * 120.00065 * 147.82429 * 9 7 2 11 11 O 1.21555 * 119.99413 * 185.24028 * 10 9 7 12 12 C 1.47962 * 119.99907 * 5.23631 * 10 9 7 13 13 C 1.40079 * 120.90378 * 325.09858 * 12 10 9 14 14 C 1.37927 * 119.12086 * 180.02562 * 13 12 10 15 15 N 1.31936 * 120.98946 * 359.73268 * 14 13 12 16 16 C 1.32198 * 121.99236 * 0.55801 * 15 14 13 17 17 O 1.35686 * 119.61941 * 179.71300 * 16 15 14 18 18 C 1.42892 * 116.99892 * 359.73053 * 17 16 15 19 19 C 1.53007 * 109.47402 * 180.02562 * 18 17 16 20 20 F 1.39901 * 109.46609 * 300.00023 * 19 18 17 21 21 F 1.39898 * 109.46809 * 59.99915 * 19 18 17 22 22 C 1.38848 * 120.76393 * 359.44049 * 16 15 14 23 23 C 1.39708 * 119.99689 * 327.81596 * 9 7 2 24 24 C 1.38977 * 120.08106 * 111.39550 * 23 9 7 25 25 C 1.38083 * 119.92459 * 179.72002 * 24 23 9 26 26 C 1.38309 * 120.07345 * 0.52830 * 25 24 23 27 27 C 1.38313 * 120.16341 * 359.76877 * 26 25 24 28 28 C 1.38075 * 120.07764 * 359.95066 * 27 26 25 29 29 H 0.96999 * 120.00184 * 5.05920 * 1 2 3 30 30 H 1.08002 * 120.43671 * 0.04660 * 13 12 10 31 31 H 1.08003 * 119.50479 * 179.97438 * 14 13 12 32 32 H 1.08999 * 109.47116 * 59.99997 * 18 17 16 33 33 H 1.09009 * 109.47329 * 300.00019 * 18 17 16 34 34 H 1.08996 * 109.47238 * 179.97438 * 19 18 17 35 35 H 1.08001 * 120.53456 * 180.29155 * 22 16 15 36 36 H 1.08011 * 120.03609 * 359.97331 * 24 23 9 37 37 H 1.07991 * 119.95960 * 180.27526 * 25 24 23 38 38 H 1.08003 * 119.91532 * 179.74560 * 26 25 24 39 39 H 1.08003 * 119.95645 * 179.97438 * 27 26 25 40 40 H 1.07997 * 120.03860 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6176 0.0000 4 1 2.4950 2.0463 -1.4001 5 1 1.4449 2.6526 0.7000 6 1 3.5450 1.4401 0.7001 7 6 2.0085 -1.2041 0.0005 8 1 3.0651 -1.2177 -0.2228 9 7 1.3538 -2.3720 0.2840 10 6 1.7462 -3.5228 -0.2977 11 8 1.1073 -4.5417 -0.1210 12 6 2.9545 -3.5457 -1.1514 13 6 3.2895 -2.4474 -1.9537 14 6 4.4240 -2.5086 -2.7357 15 7 5.1942 -3.5798 -2.7326 16 6 4.9146 -4.6414 -1.9961 17 8 5.7374 -5.7197 -2.0342 18 6 6.8762 -5.6366 -2.8932 19 6 7.6784 -6.9365 -2.8039 20 9 8.1022 -7.1332 -1.4853 21 9 6.8728 -8.0096 -3.1999 22 6 3.7917 -4.6636 -1.1797 23 6 0.2790 -2.3714 1.1764 24 6 -1.0094 -2.6145 0.7153 25 6 -2.0686 -2.6189 1.6011 26 6 -1.8501 -2.3709 2.9441 27 6 -0.5701 -2.1225 3.4057 28 6 0.4946 -2.1223 2.5266 29 1 -0.4850 0.8367 -0.0741 30 1 2.6678 -1.5643 -1.9596 31 1 4.6879 -1.6655 -3.3570 32 1 7.5036 -4.8002 -2.5850 33 1 6.5460 -5.4837 -3.9207 34 1 8.5468 -6.8733 -3.4595 35 1 3.5693 -5.5310 -0.5759 36 1 -1.1813 -2.8038 -0.3341 37 1 -3.0694 -2.8121 1.2442 38 1 -2.6810 -2.3709 3.6341 39 1 -0.4033 -1.9289 4.4550 40 1 1.4937 -1.9279 2.8876 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089622015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:23 Heat of formation + Delta-G solvation = -87.952027 kcal Electronic energy + Delta-G solvation = -29799.085048 eV Core-core repulsion = 25215.952015 eV Total energy + Delta-G solvation = -4583.133033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.107 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.09157 -47.12437 -40.50304 -39.44048 -37.90898 -37.04359 -35.01323 -32.18857 -31.91795 -31.27953 -30.01397 -29.43403 -28.76398 -25.44968 -24.53303 -23.24592 -22.81588 -21.68305 -21.44263 -19.84311 -18.72198 -17.89008 -17.65480 -17.34578 -16.93752 -16.25410 -15.87811 -15.76462 -15.39011 -15.17642 -14.93510 -14.48038 -14.37792 -14.05728 -13.99799 -13.61529 -13.48409 -13.45533 -13.19814 -12.89625 -12.75544 -12.51954 -12.45746 -11.80256 -11.74866 -11.59749 -11.30334 -11.25267 -11.16679 -11.00090 -10.71735 -10.49556 -10.34249 -9.64029 -9.49219 -9.39926 -8.78308 -8.38960 -8.12074 -7.99666 -7.55680 -6.52594 -4.30075 1.27779 1.55382 2.30103 2.37764 2.76090 2.96743 3.08339 3.10338 3.56188 3.60008 3.86057 3.93081 4.18047 4.30038 4.38246 4.45565 4.66572 4.73646 4.92191 5.16018 5.21798 5.35851 5.44652 5.56844 5.69068 5.78841 5.81979 5.92467 6.03633 6.28725 6.34084 6.45408 6.61557 6.70574 6.80288 6.90479 7.15155 7.20640 7.33692 7.35604 7.48551 7.62331 7.85619 8.06833 8.21535 8.75859 9.09279 9.54859 10.40471 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.003023 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.872861 B = 9258.669350 C =10570.534563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.054 3.946 3 Si 0.916 3.084 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.366 4.366 8 H 0.107 0.893 9 N -0.389 5.389 10 C 0.505 3.495 11 O -0.579 6.579 12 C -0.014 4.014 13 C -0.157 4.157 14 C 0.114 3.886 15 N -0.541 5.541 16 C 0.300 3.700 17 O -0.298 6.298 18 C 0.021 3.979 19 C 0.270 3.730 20 F -0.200 7.200 21 F -0.199 7.199 22 C -0.144 4.144 23 C 0.215 3.785 24 C -0.065 4.065 25 C -0.123 4.123 26 C -0.145 4.145 27 C -0.124 4.124 28 C -0.125 4.125 29 H 0.276 0.724 30 H 0.175 0.825 31 H 0.160 0.840 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.129 0.871 35 H 0.143 0.857 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.235 -2.991 -4.300 10.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.157 4.157 3 Si 0.741 3.259 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.492 4.492 8 H 0.124 0.876 9 N -0.103 5.103 10 C 0.295 3.705 11 O -0.463 6.463 12 C -0.024 4.024 13 C -0.177 4.177 14 C -0.040 4.040 15 N -0.266 5.266 16 C 0.122 3.878 17 O -0.206 6.206 18 C -0.056 4.056 19 C 0.216 3.784 20 F -0.181 7.181 21 F -0.181 7.181 22 C -0.166 4.166 23 C 0.124 3.876 24 C -0.085 4.085 25 C -0.141 4.141 26 C -0.163 4.163 27 C -0.143 4.143 28 C -0.145 4.145 29 H 0.087 0.913 30 H 0.193 0.807 31 H 0.177 0.823 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.146 0.854 35 H 0.161 0.839 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.446 -3.624 -4.491 11.069 hybrid contribution -0.218 1.226 0.380 1.302 sum 9.229 -2.397 -4.111 10.383 Atomic orbital electron populations 1.69851 1.06100 1.28622 1.42318 1.25413 0.95361 0.99811 0.95088 0.86086 0.79742 0.81105 0.78940 1.19713 1.20435 1.19012 1.19744 0.94563 0.82952 1.51984 0.87585 1.40959 1.27325 1.06962 1.35029 1.17998 0.86040 0.84343 0.82149 1.90701 1.57190 1.33960 1.64443 1.20120 0.94173 0.92655 0.95487 1.23093 0.98474 1.00591 0.95562 1.22335 0.91051 0.94101 0.96525 1.67021 1.34327 1.01478 1.23745 1.19393 0.89332 0.85967 0.93138 1.86269 1.35542 1.36016 1.62797 1.23704 0.88043 0.96765 0.97078 1.22141 0.91915 0.83838 0.80456 1.93022 1.90599 1.95707 1.38758 1.93022 1.75887 1.58673 1.90500 1.21026 0.93419 1.00458 1.01687 1.17327 0.87401 0.94811 0.88057 1.20853 0.91430 0.97397 0.98771 1.20774 0.97980 1.01952 0.93433 1.20812 0.96365 1.03574 0.95541 1.20706 0.92830 1.02331 0.98441 1.21000 0.98710 1.02237 0.92565 0.91315 0.80748 0.82312 0.88694 0.88727 0.85352 0.83893 0.87200 0.87274 0.87506 0.87284 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.22 11.16 55.50 0.62 -19.60 16 2 C 0.05 1.23 5.21 -17.47 -0.09 1.14 16 3 Si 0.92 17.72 29.58 -169.99 -5.03 12.69 16 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.37 -8.38 6.64 -15.01 -0.10 -8.48 16 8 H 0.11 2.30 5.58 -52.49 -0.29 2.01 16 9 N -0.39 -9.30 2.63 -59.94 -0.16 -9.46 16 10 C 0.50 12.01 7.30 -12.28 -0.09 11.92 16 11 O -0.58 -15.14 16.49 5.32 0.09 -15.05 16 12 C -0.01 -0.28 5.49 -104.68 -0.57 -0.85 16 13 C -0.16 -2.82 7.69 -39.01 -0.30 -3.12 16 14 C 0.11 1.74 11.16 -17.62 -0.20 1.55 16 15 N -0.54 -8.62 9.18 -13.39 -0.12 -8.74 16 16 C 0.30 5.15 7.49 -17.17 -0.13 5.02 16 17 O -0.30 -4.68 10.00 -18.76 -0.19 -4.86 16 18 C 0.02 0.23 5.53 37.16 0.21 0.44 16 19 C 0.27 2.51 5.63 37.16 0.21 2.72 16 20 F -0.20 -2.40 17.28 2.25 0.04 -2.36 16 21 F -0.20 -2.40 17.28 2.25 0.04 -2.36 16 22 C -0.14 -2.75 9.66 -38.81 -0.37 -3.12 16 23 C 0.21 5.10 2.95 -83.72 -0.25 4.86 16 24 C -0.07 -1.49 8.42 -39.36 -0.33 -1.83 16 25 C -0.12 -2.43 10.04 -39.61 -0.40 -2.83 16 26 C -0.14 -2.66 10.04 -39.53 -0.40 -3.06 16 27 C -0.12 -2.38 10.04 -39.61 -0.40 -2.78 16 28 C -0.13 -2.75 9.83 -39.37 -0.39 -3.13 16 29 H 0.28 6.40 8.31 -40.82 -0.34 6.06 16 30 H 0.18 3.26 5.67 -52.49 -0.30 2.96 16 31 H 0.16 1.87 8.06 -52.48 -0.42 1.45 16 32 H 0.09 0.94 8.10 -51.93 -0.42 0.51 16 33 H 0.09 0.93 8.11 -51.92 -0.42 0.51 16 34 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.14 2.73 8.05 -52.49 -0.42 2.31 16 36 H 0.11 2.62 8.06 -52.48 -0.42 2.20 16 37 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 39 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 358.35 15.07 5.40 5.40 Total: -1.00 -29.60 358.35 -6.86 -36.46 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -3.95 Total: 9.45 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -3.60 Total: -1.56 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.34 Total: -37.81 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.10 Total: -19.91 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.08 Total: -4.72 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.60 -6.86 -36.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089622015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.494 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds