Wall clock time and date at job start Tue Mar 31 2020 05:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31341 * 1 3 3 Si 1.86791 * 120.00113 * 2 1 4 4 H 1.48503 * 109.47369 * 269.99745 * 3 2 1 5 5 H 1.48498 * 109.47090 * 29.99854 * 3 2 1 6 6 H 1.48505 * 109.47201 * 149.99900 * 3 2 1 7 7 C 1.39031 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99855 * 166.18327 * 7 2 1 9 9 N 1.36858 * 120.00157 * 346.19057 * 7 2 1 10 10 C 1.34778 * 120.00065 * 147.82429 * 9 7 2 11 11 O 1.21555 * 119.99413 * 185.24028 * 10 9 7 12 12 C 1.47962 * 119.99907 * 5.23631 * 10 9 7 13 13 C 1.40079 * 120.90378 * 325.09858 * 12 10 9 14 14 C 1.37927 * 119.12086 * 180.02562 * 13 12 10 15 15 N 1.31936 * 120.98946 * 359.73268 * 14 13 12 16 16 C 1.32198 * 121.99236 * 0.55801 * 15 14 13 17 17 O 1.35686 * 119.61941 * 179.71300 * 16 15 14 18 18 C 1.42892 * 116.99892 * 359.73053 * 17 16 15 19 19 C 1.53007 * 109.47402 * 180.02562 * 18 17 16 20 20 F 1.39901 * 109.46609 * 300.00023 * 19 18 17 21 21 F 1.39898 * 109.46809 * 59.99915 * 19 18 17 22 22 C 1.38848 * 120.76393 * 359.44049 * 16 15 14 23 23 C 1.39708 * 119.99689 * 327.81596 * 9 7 2 24 24 C 1.38977 * 120.08106 * 111.39550 * 23 9 7 25 25 C 1.38083 * 119.92459 * 179.72002 * 24 23 9 26 26 C 1.38309 * 120.07345 * 0.52830 * 25 24 23 27 27 C 1.38313 * 120.16341 * 359.76877 * 26 25 24 28 28 C 1.38075 * 120.07764 * 359.95066 * 27 26 25 29 29 H 0.96999 * 120.00184 * 5.05920 * 1 2 3 30 30 H 1.08002 * 120.43671 * 0.04660 * 13 12 10 31 31 H 1.08003 * 119.50479 * 179.97438 * 14 13 12 32 32 H 1.08999 * 109.47116 * 59.99997 * 18 17 16 33 33 H 1.09009 * 109.47329 * 300.00019 * 18 17 16 34 34 H 1.08996 * 109.47238 * 179.97438 * 19 18 17 35 35 H 1.08001 * 120.53456 * 180.29155 * 22 16 15 36 36 H 1.08011 * 120.03609 * 359.97331 * 24 23 9 37 37 H 1.07991 * 119.95960 * 180.27526 * 25 24 23 38 38 H 1.08003 * 119.91532 * 179.74560 * 26 25 24 39 39 H 1.08003 * 119.95645 * 179.97438 * 27 26 25 40 40 H 1.07997 * 120.03860 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6176 0.0000 4 1 2.4950 2.0463 -1.4001 5 1 1.4449 2.6526 0.7000 6 1 3.5450 1.4401 0.7001 7 6 2.0085 -1.2041 0.0005 8 1 3.0651 -1.2177 -0.2228 9 7 1.3538 -2.3720 0.2840 10 6 1.7462 -3.5228 -0.2977 11 8 1.1073 -4.5417 -0.1210 12 6 2.9545 -3.5457 -1.1514 13 6 3.2895 -2.4474 -1.9537 14 6 4.4240 -2.5086 -2.7357 15 7 5.1942 -3.5798 -2.7326 16 6 4.9146 -4.6414 -1.9961 17 8 5.7374 -5.7197 -2.0342 18 6 6.8762 -5.6366 -2.8932 19 6 7.6784 -6.9365 -2.8039 20 9 8.1022 -7.1332 -1.4853 21 9 6.8728 -8.0096 -3.1999 22 6 3.7917 -4.6636 -1.1797 23 6 0.2790 -2.3714 1.1764 24 6 -1.0094 -2.6145 0.7153 25 6 -2.0686 -2.6189 1.6011 26 6 -1.8501 -2.3709 2.9441 27 6 -0.5701 -2.1225 3.4057 28 6 0.4946 -2.1223 2.5266 29 1 -0.4850 0.8367 -0.0741 30 1 2.6678 -1.5643 -1.9596 31 1 4.6879 -1.6655 -3.3570 32 1 7.5036 -4.8002 -2.5850 33 1 6.5460 -5.4837 -3.9207 34 1 8.5468 -6.8733 -3.4595 35 1 3.5693 -5.5310 -0.5759 36 1 -1.1813 -2.8038 -0.3341 37 1 -3.0694 -2.8121 1.2442 38 1 -2.6810 -2.3709 3.6341 39 1 -0.4033 -1.9289 4.4550 40 1 1.4937 -1.9279 2.8876 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089622015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:22 Heat of formation + Delta-G solvation = -105.439975 kcal Electronic energy + Delta-G solvation = -29799.843383 eV Core-core repulsion = 25215.952015 eV Total energy + Delta-G solvation = -4583.891367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.107 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.91726 -47.97353 -41.95199 -41.01307 -39.32817 -38.55919 -36.78355 -33.74995 -33.58812 -32.39694 -31.63099 -30.66338 -30.26625 -27.19441 -25.95809 -24.43340 -24.06338 -23.28768 -22.91188 -21.41893 -20.23102 -19.28479 -18.56248 -18.50646 -17.95530 -17.55945 -17.44195 -16.93017 -16.80786 -16.70764 -16.55267 -16.05994 -15.98041 -15.48665 -15.08685 -14.89240 -14.72758 -14.58425 -14.49533 -14.35005 -14.20392 -14.11758 -13.47241 -13.36991 -13.33406 -13.06334 -12.90917 -12.60258 -12.30645 -12.26449 -12.07468 -12.00187 -11.95360 -11.23609 -11.14009 -10.87279 -10.45829 -10.08358 -9.62893 -9.49682 -9.25244 -8.25227 -6.09929 -0.20896 0.17746 0.68166 0.75128 1.42892 1.49964 1.59354 1.65836 1.92659 2.24531 2.65597 2.80538 2.84417 3.00382 3.23326 3.25879 3.29997 3.52372 3.87696 3.93433 4.05102 4.09791 4.19587 4.24783 4.32602 4.37009 4.43243 4.45866 4.67307 4.71234 4.85041 4.87588 5.04153 5.28129 5.30916 5.33091 5.44681 5.60382 5.73013 5.80395 5.95587 6.09250 6.19972 6.47729 6.72440 6.98105 7.32008 7.77737 8.67469 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.003023 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.872861 B = 9258.669350 C =10570.534563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.019 3.981 3 Si 0.981 3.019 4 H -0.256 1.256 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.376 4.376 8 H 0.116 0.884 9 N -0.393 5.393 10 C 0.487 3.513 11 O -0.620 6.620 12 C -0.032 4.032 13 C -0.164 4.164 14 C 0.137 3.863 15 N -0.527 5.527 16 C 0.309 3.691 17 O -0.316 6.316 18 C 0.010 3.990 19 C 0.267 3.733 20 F -0.218 7.218 21 F -0.218 7.218 22 C -0.164 4.164 23 C 0.185 3.815 24 C -0.093 4.093 25 C -0.124 4.124 26 C -0.138 4.138 27 C -0.119 4.119 28 C -0.149 4.149 29 H 0.274 0.726 30 H 0.167 0.833 31 H 0.207 0.793 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.191 0.809 35 H 0.128 0.872 36 H 0.082 0.918 37 H 0.136 0.864 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.888 -1.502 -4.659 11.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.189 4.189 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.501 4.501 8 H 0.133 0.867 9 N -0.106 5.106 10 C 0.279 3.721 11 O -0.508 6.508 12 C -0.043 4.043 13 C -0.184 4.184 14 C -0.018 4.018 15 N -0.252 5.252 16 C 0.131 3.869 17 O -0.224 6.224 18 C -0.066 4.066 19 C 0.214 3.786 20 F -0.199 7.199 21 F -0.200 7.200 22 C -0.186 4.186 23 C 0.095 3.905 24 C -0.113 4.113 25 C -0.143 4.143 26 C -0.156 4.156 27 C -0.137 4.137 28 C -0.169 4.169 29 H 0.084 0.916 30 H 0.184 0.816 31 H 0.223 0.777 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.207 0.793 35 H 0.146 0.854 36 H 0.101 0.899 37 H 0.154 0.846 38 H 0.169 0.831 39 H 0.164 0.836 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.122 -2.147 -4.853 12.323 hybrid contribution -0.728 0.715 0.482 1.129 sum 10.394 -1.431 -4.371 11.367 Atomic orbital electron populations 1.70004 1.07547 1.29072 1.43258 1.26186 0.95922 1.02466 0.94314 0.85108 0.78299 0.76787 0.79493 1.18090 1.21324 1.18576 1.20063 0.95029 0.82891 1.52142 0.86667 1.41204 1.27288 1.07303 1.34806 1.18623 0.87075 0.83986 0.82461 1.90633 1.58827 1.35172 1.66166 1.19973 0.93619 0.94392 0.96322 1.23007 0.99644 0.99512 0.96251 1.22987 0.89039 0.94755 0.94997 1.67215 1.33853 1.01143 1.22982 1.19326 0.88780 0.86588 0.92246 1.86255 1.36761 1.35437 1.63929 1.24178 0.86758 0.98573 0.97097 1.22801 0.93147 0.82156 0.80460 1.92985 1.90710 1.95716 1.40524 1.92985 1.76779 1.59605 1.90587 1.20940 0.94790 0.99852 1.03032 1.17670 0.87662 0.96167 0.89017 1.20829 0.92581 0.99726 0.98160 1.21150 0.98317 1.00805 0.93985 1.21293 0.97448 1.01430 0.95403 1.21166 0.92315 1.00435 0.99812 1.21182 0.99744 1.03555 0.92428 0.91556 0.81583 0.77674 0.87143 0.87201 0.79255 0.85377 0.89940 0.84583 0.83092 0.83570 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -42.88 11.16 21.67 0.24 -42.64 16 2 C 0.02 0.85 5.21 84.96 0.44 1.30 16 3 Si 0.98 35.89 29.58 68.60 2.03 37.92 16 4 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 5 H -0.29 -10.85 7.11 99.48 0.71 -10.15 16 6 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 7 C -0.38 -17.67 6.64 84.10 0.56 -17.11 16 8 H 0.12 5.06 5.58 -2.91 -0.02 5.05 16 9 N -0.39 -19.86 2.63 -461.82 -1.22 -21.07 16 10 C 0.49 24.83 7.30 86.82 0.63 25.47 16 11 O -0.62 -35.12 16.49 -3.89 -0.06 -35.19 16 12 C -0.03 -1.39 5.49 -19.90 -0.11 -1.50 16 13 C -0.16 -5.88 7.69 22.64 0.17 -5.70 16 14 C 0.14 3.86 11.16 84.60 0.94 4.80 16 15 N -0.53 -15.62 9.18 -309.17 -2.84 -18.46 16 16 C 0.31 10.48 7.49 84.78 0.63 11.12 16 17 O -0.32 -9.71 10.00 -90.04 -0.90 -10.61 16 18 C 0.01 0.19 5.53 71.98 0.40 0.59 16 19 C 0.27 4.31 5.63 71.98 0.41 4.71 16 20 F -0.22 -4.94 17.28 44.97 0.78 -4.16 16 21 F -0.22 -4.96 17.28 44.97 0.78 -4.19 16 22 C -0.16 -6.55 9.66 22.77 0.22 -6.33 16 23 C 0.19 9.22 2.95 38.24 0.11 9.33 16 24 C -0.09 -4.51 8.42 22.41 0.19 -4.32 16 25 C -0.12 -4.90 10.04 22.25 0.22 -4.68 16 26 C -0.14 -4.78 10.04 22.30 0.22 -4.56 16 27 C -0.12 -4.38 10.04 22.25 0.22 -4.15 16 28 C -0.15 -6.69 9.83 22.41 0.22 -6.47 16 29 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 30 H 0.17 6.26 5.67 -2.91 -0.02 6.24 16 31 H 0.21 3.87 8.06 -2.91 -0.02 3.85 16 32 H 0.11 1.84 8.10 -2.39 -0.02 1.82 16 33 H 0.11 1.83 8.11 -2.38 -0.02 1.81 16 34 H 0.19 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.13 5.34 8.05 -2.91 -0.02 5.32 16 36 H 0.08 4.29 8.06 -2.91 -0.02 4.26 16 37 H 0.14 4.49 8.06 -2.91 -0.02 4.46 16 38 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 39 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 40 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -69.48 358.35 5.39 -64.08 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 1.10 Total: 31.82 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 5.49 Total: 2.49 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -3.81 Total: -82.17 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -0.96 Total: -45.80 kcal Atomic # 9 Polarization: -9.90 SS G_CDS: 1.55 Total: -8.35 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 2.03 Total: 37.92 kcal Total: -69.48 5.39 -64.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089622015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.357 kcal (2) G-P(sol) polarization free energy of solvation -69.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds