Wall clock time and date at job start Tue Mar 31 2020 05:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21284 * 120.00611 * 2 1 4 4 N 1.34775 * 120.00073 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00049 * 355.12480 * 4 2 1 6 6 C 1.50700 * 109.47305 * 95.80715 * 5 4 2 7 7 N 1.30525 * 126.34408 * 82.82409 * 6 5 4 8 8 N 1.28593 * 109.67023 * 179.97438 * 7 6 5 9 9 C 1.30519 * 109.67617 * 359.97438 * 8 7 6 10 10 C 1.50707 * 126.34697 * 180.02562 * 9 8 7 11 11 C 1.52997 * 117.49615 * 8.71815 * 10 9 8 12 12 C 1.53001 * 117.49477 * 300.06057 * 10 9 8 13 13 N 1.35492 * 126.34653 * 262.51060 * 6 5 4 14 14 C 1.46498 * 126.98265 * 0.03959 * 13 6 5 15 15 C 1.46500 * 120.00408 * 175.12455 * 4 2 1 16 16 H 1.08998 * 110.28914 * 178.16776 * 15 4 2 17 17 C 1.54259 * 110.32655 * 56.03316 * 15 4 2 18 18 C 1.54379 * 105.06376 * 241.10828 * 17 15 4 19 19 N 1.48564 * 104.59304 * 23.85087 * 18 17 15 20 20 C 1.46896 * 110.99816 * 200.95910 * 19 18 17 21 21 C 1.50694 * 109.47223 * 175.64328 * 20 19 18 22 22 H 1.08004 * 119.99929 * 5.07553 * 21 20 19 23 23 C 1.37878 * 120.00266 * 185.07961 * 21 20 19 24 24 N 1.31512 * 119.99899 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00289 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47217 * 89.99885 * 25 23 21 27 27 H 1.48496 * 109.47400 * 210.00386 * 25 23 21 28 28 H 1.48507 * 109.46994 * 329.99923 * 25 23 21 29 29 C 1.48818 * 104.23467 * 320.49308 * 19 18 17 30 30 H 1.08991 * 109.47282 * 184.22274 * 1 2 3 31 31 H 1.09006 * 109.47260 * 304.22532 * 1 2 3 32 32 H 1.09000 * 109.47249 * 64.22519 * 1 2 3 33 33 H 1.09007 * 109.46875 * 335.80925 * 5 4 2 34 34 H 1.08997 * 109.47567 * 215.81390 * 5 4 2 35 35 H 1.09000 * 115.54847 * 154.38956 * 10 9 8 36 36 H 1.08995 * 117.50280 * 0.02562 * 11 10 9 37 37 H 1.09004 * 117.49144 * 145.02405 * 11 10 9 38 38 H 1.09003 * 117.49789 * 214.98083 * 12 10 9 39 39 H 1.08995 * 117.50105 * 359.97438 * 12 10 9 40 40 H 1.08999 * 109.47260 * 85.47988 * 14 13 6 41 41 H 1.09001 * 109.47279 * 205.47963 * 14 13 6 42 42 H 1.08998 * 109.46739 * 325.47854 * 14 13 6 43 43 H 1.08998 * 110.31922 * 0.02562 * 17 15 4 44 44 H 1.09002 * 110.32081 * 122.20973 * 17 15 4 45 45 H 1.09005 * 110.40977 * 142.62847 * 18 17 15 46 46 H 1.09000 * 110.40853 * 264.95264 * 18 17 15 47 47 H 1.09000 * 109.47411 * 295.64175 * 20 19 18 48 48 H 1.09005 * 109.47305 * 55.64293 * 20 19 18 49 49 H 0.97004 * 120.00174 * 180.02562 * 24 23 21 50 50 H 1.09003 * 110.45291 * 280.76912 * 29 19 18 51 51 H 1.09009 * 110.49276 * 158.25256 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4523 -2.4336 0.1089 6 6 1.2228 -3.0005 -1.2684 7 7 2.0720 -3.7039 -1.9668 8 7 1.5447 -4.0231 -3.0954 9 6 0.3351 -3.5384 -3.1681 10 6 -0.6192 -3.6883 -4.3248 11 6 -0.2221 -4.6480 -5.4483 12 6 -0.1772 -3.1358 -5.6814 13 7 0.0945 -2.8797 -2.0087 14 6 -1.1349 -2.1769 -1.6332 15 6 3.6419 -1.1696 -0.1073 16 1 4.0227 -2.1897 -0.0587 17 6 4.2633 -0.3115 1.0139 18 6 5.0282 0.8121 0.2820 19 7 4.3631 0.9165 -1.0424 20 6 5.2444 1.5618 -2.0246 21 6 4.5801 1.5537 -3.3772 22 1 3.5690 1.1881 -3.4801 23 6 5.2629 2.0130 -4.4834 24 7 6.4943 2.4577 -4.3583 25 14 4.4397 2.0024 -6.1602 26 1 3.7307 3.2899 -6.3718 27 1 5.4689 1.8247 -7.2159 28 1 3.4650 0.8839 -6.2260 29 6 4.0835 -0.4946 -1.4236 30 1 -0.3633 -1.0248 0.0757 31 1 -0.3634 0.5780 0.8497 32 1 -0.3634 0.4469 -0.9254 33 1 0.4922 -2.2599 0.5950 34 1 2.0363 -3.1393 0.6997 35 1 -1.6775 -3.6181 -4.0733 36 1 0.7290 -5.1713 -5.3506 37 1 -1.0194 -5.2089 -5.9362 38 1 -0.9447 -2.7024 -6.3226 39 1 0.8036 -2.6635 -5.7371 40 1 -1.0411 -1.1206 -1.8854 41 1 -1.9784 -2.6060 -2.1741 42 1 -1.2999 -2.2812 -0.5609 43 1 3.4813 0.1111 1.6447 44 1 4.9506 -0.9101 1.6118 45 1 4.9379 1.7514 0.8278 46 1 6.0774 0.5422 0.1623 47 1 5.4360 2.5907 -1.7201 48 1 6.1872 1.0175 -2.0796 49 1 6.9746 2.7812 -5.1365 50 1 4.9845 -0.9702 -1.8111 51 1 3.2820 -0.5390 -2.1612 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089930381.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:02 Heat of formation + Delta-G solvation = 114.022654 kcal Electronic energy + Delta-G solvation = -32704.203086 eV Core-core repulsion = 28642.593451 eV Total energy + Delta-G solvation = -4061.609636 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.24844 -40.03117 -37.41046 -37.20086 -35.71160 -34.96273 -32.91102 -31.22372 -30.61627 -29.53501 -28.13289 -27.34296 -26.50195 -25.94949 -24.27018 -22.62543 -22.59385 -21.38399 -20.98536 -20.26247 -19.93667 -18.53781 -17.42475 -16.95792 -16.59040 -16.26336 -15.95888 -15.67491 -15.40028 -14.85790 -14.76435 -14.39041 -14.29580 -13.96413 -13.86982 -13.42815 -13.24073 -12.89550 -12.65964 -12.59012 -12.36153 -12.00449 -11.84308 -11.73559 -11.64423 -11.47442 -11.37166 -11.27120 -11.17458 -10.92366 -10.82846 -10.73866 -10.53552 -10.50226 -10.32640 -10.24640 -10.20954 -9.72624 -9.23148 -8.99433 -8.96372 -8.50788 -8.31862 -6.97728 -5.92298 -3.91925 1.56096 2.21946 2.68796 3.00436 3.28117 3.36934 3.41686 3.46179 3.64696 3.98352 4.13115 4.20928 4.36419 4.51322 4.51669 4.59142 4.60585 4.71105 4.75869 4.93080 4.99384 5.11562 5.16757 5.28332 5.35479 5.39118 5.42612 5.44674 5.47644 5.59399 5.65687 5.74222 5.80893 5.83750 5.87917 5.97812 6.07554 6.14257 6.24289 6.30206 6.53140 6.68769 6.71366 6.84238 6.92133 7.40400 7.52513 7.59778 7.90955 8.16692 8.38224 8.57520 8.71313 8.72470 9.16221 9.71454 11.19221 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007936 B = 0.004856 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3527.364436 B = 5764.938630 C = 8072.667143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.492 3.508 3 O -0.461 6.461 4 N -0.605 5.605 5 C 0.198 3.802 6 C 0.152 3.848 7 N -0.271 5.271 8 N -0.288 5.288 9 C 0.208 3.792 10 C -0.091 4.091 11 C -0.148 4.148 12 C -0.157 4.157 13 N -0.466 5.466 14 C 0.062 3.938 15 C 0.143 3.857 16 H 0.090 0.910 17 C -0.122 4.122 18 C 0.041 3.959 19 N -0.479 5.479 20 C 0.180 3.820 21 C -0.498 4.498 22 H 0.056 0.944 23 C 0.055 3.945 24 N -0.899 5.899 25 Si 0.894 3.106 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.276 1.276 29 C 0.053 3.947 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.027 0.973 47 H 0.027 0.973 48 H -0.008 1.008 49 H 0.260 0.740 50 H 0.041 0.959 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.057 -14.356 8.962 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.278 3.722 3 O -0.330 6.330 4 N -0.341 5.341 5 C 0.072 3.928 6 C -0.116 4.116 7 N -0.111 5.111 8 N -0.128 5.128 9 C -0.059 4.059 10 C -0.111 4.111 11 C -0.186 4.186 12 C -0.195 4.195 13 N -0.157 5.157 14 C -0.081 4.081 15 C 0.040 3.960 16 H 0.108 0.892 17 C -0.161 4.161 18 C -0.088 4.088 19 N -0.203 5.203 20 C 0.054 3.946 21 C -0.537 4.537 22 H 0.075 0.925 23 C -0.146 4.146 24 N -0.539 5.539 25 Si 0.722 3.278 26 H -0.207 1.207 27 H -0.212 1.212 28 H -0.201 1.201 29 C -0.077 4.077 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.045 0.955 48 H 0.010 0.990 49 H 0.069 0.931 50 H 0.059 0.941 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.783 -14.018 8.536 24.944 hybrid contribution -0.898 0.259 -0.846 1.261 sum -19.682 -13.759 7.691 25.216 Atomic orbital electron populations 1.22438 0.94056 1.03260 1.05114 1.20607 0.89726 0.83999 0.77870 1.90987 1.69053 1.29472 1.43458 1.48132 1.06865 1.04311 1.74826 1.19831 0.99006 0.86945 0.87069 1.25401 0.84294 1.02772 0.99149 1.74254 1.23872 1.13280 0.99742 1.74224 1.04503 1.21138 1.12931 1.23713 0.95787 0.97648 0.88712 1.20076 0.95789 1.09637 0.85642 1.23025 1.04195 0.92885 0.98467 1.23125 1.03946 0.97019 0.95442 1.45825 1.14300 1.41103 1.14486 1.22491 0.84416 0.98548 1.02632 1.21976 0.78009 0.99419 0.96631 0.89178 1.22582 0.99358 0.96927 0.97199 1.22890 0.94885 0.97635 0.93413 1.65660 1.40938 1.12639 1.01041 1.19881 0.90223 0.94367 0.90098 1.21100 0.99844 1.41001 0.91741 0.92541 1.24966 0.94878 0.95712 0.99040 1.69962 1.10588 1.43353 1.30041 0.86560 0.79076 0.78241 0.83915 1.20716 1.21241 1.20098 1.23098 0.99843 0.90392 0.94338 0.91119 0.88938 0.89064 0.88376 0.87119 0.86109 0.87129 0.87928 0.87767 0.87806 0.89206 0.88996 0.88826 0.90930 0.92159 0.91388 0.95450 0.95511 0.99003 0.93080 0.94099 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.75 8.78 36.00 0.32 -1.43 16 2 C 0.49 7.35 6.92 -10.99 -0.08 7.27 16 3 O -0.46 -9.34 12.96 5.55 0.07 -9.27 16 4 N -0.60 -8.27 2.40 -165.90 -0.40 -8.67 16 5 C 0.20 1.94 5.60 -5.19 -0.03 1.91 16 6 C 0.15 1.94 7.60 -154.98 -1.18 0.76 16 7 N -0.27 -4.47 12.21 32.80 0.40 -4.07 16 8 N -0.29 -4.74 11.83 32.80 0.39 -4.35 16 9 C 0.21 2.68 7.55 -154.98 -1.17 1.51 16 10 C -0.09 -0.85 5.95 -91.77 -0.55 -1.40 16 11 C -0.15 -1.32 10.15 -26.69 -0.27 -1.59 16 12 C -0.16 -1.55 10.24 -26.69 -0.27 -1.82 16 13 N -0.47 -5.05 3.15 -118.00 -0.37 -5.42 16 14 C 0.06 0.36 9.21 59.85 0.55 0.91 16 15 C 0.14 2.35 3.57 -66.55 -0.24 2.11 16 16 H 0.09 1.34 7.91 -51.93 -0.41 0.93 16 17 C -0.12 -1.96 6.00 -25.35 -0.15 -2.12 16 18 C 0.04 0.83 6.16 -2.18 -0.01 0.81 16 19 N -0.48 -11.60 3.42 -231.18 -0.79 -12.39 16 20 C 0.18 5.18 4.68 -4.98 -0.02 5.15 16 21 C -0.50 -15.22 8.57 -34.44 -0.30 -15.52 16 22 H 0.06 1.76 7.15 -52.48 -0.38 1.38 16 23 C 0.05 1.66 5.46 -17.82 -0.10 1.56 16 24 N -0.90 -28.33 13.29 55.43 0.74 -27.59 16 25 Si 0.89 23.14 29.54 -169.99 -5.02 18.12 16 26 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 29 C 0.05 1.16 4.84 -2.04 -0.01 1.15 16 30 H 0.07 0.42 2.20 -51.93 -0.11 0.31 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.87 7.15 -51.93 -0.37 0.50 16 33 H 0.10 0.59 5.17 -51.93 -0.27 0.32 16 34 H 0.11 0.92 8.05 -51.93 -0.42 0.50 16 35 H 0.12 0.76 7.40 -51.93 -0.38 0.37 16 36 H 0.11 1.19 7.92 -51.93 -0.41 0.78 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.09 0.55 6.13 -51.93 -0.32 0.23 16 41 H 0.09 0.33 7.24 -51.93 -0.38 -0.05 16 42 H 0.09 0.29 6.06 -51.93 -0.31 -0.02 16 43 H 0.07 1.17 6.81 -51.93 -0.35 0.81 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.03 0.56 7.91 -51.93 -0.41 0.15 16 47 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 48 H -0.01 -0.24 7.98 -51.93 -0.41 -0.65 16 49 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 50 H 0.04 0.97 7.97 -51.93 -0.41 0.55 16 51 H 0.07 1.71 7.43 -51.92 -0.39 1.32 16 LS Contribution 397.18 15.07 5.99 5.99 Total: -1.00 -39.92 397.18 -10.34 -50.26 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -7.83 Total: -1.90 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -3.51 Total: -0.71 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: -0.04 Total: -62.49 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -39.92 -10.34 -50.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089930381.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.282 kcal (2) G-P(sol) polarization free energy of solvation -39.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds