Wall clock time and date at job start Tue Mar 31 2020 06:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47143 * 2 1 4 4 C 1.52998 * 109.47297 * 171.16925 * 3 2 1 5 5 C 1.52993 * 109.47505 * 184.99809 * 4 3 2 6 6 C 1.53001 * 109.46856 * 291.16416 * 3 2 1 7 7 N 1.46495 * 109.47439 * 293.64354 * 6 3 2 8 8 C 1.46500 * 120.00266 * 275.96240 * 7 6 3 9 9 C 1.50702 * 109.46828 * 270.50216 * 8 7 6 10 10 H 1.08003 * 119.99984 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99788 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99937 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99848 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47124 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47201 * 119.99802 * 13 11 9 16 16 H 1.48505 * 109.46978 * 239.99590 * 13 11 9 17 17 C 1.34783 * 119.99946 * 95.95742 * 7 6 3 18 18 O 1.21581 * 120.00090 * 184.89449 * 17 7 6 19 19 N 1.34779 * 119.99746 * 4.90208 * 17 7 6 20 20 C 1.39951 * 119.99659 * 185.64232 * 19 17 7 21 21 C 1.38863 * 120.06627 * 33.22576 * 20 19 17 22 22 C 1.38117 * 119.92610 * 180.02562 * 21 20 19 23 23 C 1.38281 * 120.07158 * 0.02562 * 22 21 20 24 24 N 1.48019 * 119.93331 * 179.97438 * 23 22 21 25 25 O 1.21803 * 119.99754 * 0.02562 * 24 23 22 26 26 O 1.21799 * 120.00060 * 179.72101 * 24 23 22 27 27 C 1.38290 * 120.13761 * 0.25419 * 23 22 21 28 28 C 1.38115 * 120.06857 * 359.44894 * 27 23 22 29 29 H 1.09002 * 109.47152 * 180.25644 * 1 2 3 30 30 H 1.08999 * 109.47472 * 300.25404 * 1 2 3 31 31 H 1.09002 * 109.47400 * 60.25799 * 1 2 3 32 32 H 1.08995 * 109.47101 * 239.99301 * 2 1 3 33 33 H 1.09003 * 109.46874 * 119.99701 * 2 1 3 34 34 H 1.08999 * 109.47035 * 51.16414 * 3 2 1 35 35 H 1.09004 * 109.46646 * 304.99750 * 4 3 2 36 36 H 1.08996 * 109.47132 * 64.99476 * 4 3 2 37 37 H 1.08999 * 109.46956 * 300.00118 * 5 4 3 38 38 H 1.09010 * 109.47165 * 59.99750 * 5 4 3 39 39 H 1.08996 * 109.47683 * 179.97438 * 5 4 3 40 40 H 1.08999 * 109.47370 * 173.63987 * 6 3 2 41 41 H 1.09005 * 109.46709 * 53.64922 * 6 3 2 42 42 H 1.09004 * 109.46728 * 30.49586 * 8 7 6 43 43 H 1.08993 * 109.47024 * 150.49810 * 8 7 6 44 44 H 0.96996 * 120.00164 * 180.02562 * 12 11 9 45 45 H 0.96998 * 120.00414 * 5.64360 * 19 17 7 46 46 H 1.07998 * 120.03861 * 359.97438 * 21 20 19 47 47 H 1.07995 * 119.96849 * 179.97438 * 22 21 20 48 48 H 1.07997 * 119.96395 * 179.70661 * 27 23 22 49 49 H 1.07994 * 120.03607 * 180.25056 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5538 1.4482 0.2214 5 6 4.0456 2.8916 0.3459 6 6 1.7189 2.0969 -1.3452 7 7 2.4919 1.4423 -2.4036 8 6 3.8717 1.8582 -2.6670 9 6 3.8756 2.9699 -3.6845 10 1 2.9436 3.3303 -4.0942 11 6 5.0692 3.5263 -4.0930 12 7 6.2042 3.0871 -3.5945 13 14 5.0742 4.9038 -5.3547 14 1 3.6782 5.2122 -5.7563 15 1 5.6985 6.1145 -4.7633 16 1 5.8498 4.4795 -6.5478 17 6 1.9337 0.4573 -3.1349 18 8 2.6015 -0.1463 -3.9521 19 7 0.6350 0.1417 -2.9605 20 6 0.0855 -0.9562 -3.6322 21 6 0.8655 -2.0757 -3.8901 22 6 0.3203 -3.1574 -4.5538 23 6 -1.0006 -3.1261 -4.9616 24 7 -1.5815 -4.2868 -5.6731 25 8 -0.8963 -5.2683 -5.8983 26 8 -2.7463 -4.2627 -6.0284 27 6 -1.7783 -2.0104 -4.7113 28 6 -1.2408 -0.9280 -4.0427 29 1 -0.3633 -1.0277 0.0046 30 1 -0.3634 0.5178 0.8877 31 1 -0.3634 0.5098 -0.8923 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 1.5535 1.9998 0.8005 35 1 3.7892 0.9040 1.1361 36 1 4.0465 0.9681 -0.6240 37 1 3.8102 3.4358 -0.5687 38 1 3.5529 3.3717 1.1915 39 1 5.1240 2.8957 0.5041 40 1 1.9794 3.1545 -1.3062 41 1 0.6544 1.9925 -1.5551 42 1 4.3278 2.2107 -1.7419 43 1 4.4392 1.0111 -3.0522 44 1 7.0438 3.4787 -3.8816 45 1 0.0813 0.6754 -2.3694 46 1 1.8976 -2.1002 -3.5730 47 1 0.9265 -4.0282 -4.7551 48 1 -2.8083 -1.9871 -5.0353 49 1 -1.8498 -0.0586 -3.8440 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089943143.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:57 Heat of formation + Delta-G solvation = 2.731776 kcal Electronic energy + Delta-G solvation = -32147.305425 eV Core-core repulsion = 27885.432531 eV Total energy + Delta-G solvation = -4261.872894 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 349.183 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.13223 -40.93538 -39.18156 -37.40357 -36.52314 -35.15292 -33.95523 -32.63963 -32.13118 -31.49806 -30.55255 -28.43858 -26.92972 -25.83862 -25.26603 -23.58740 -23.22880 -22.06851 -21.74458 -20.39790 -19.53223 -19.33663 -18.60057 -18.29698 -17.48420 -16.95324 -16.90319 -15.84883 -15.35498 -15.23807 -14.95881 -14.72286 -14.34220 -14.21318 -13.94704 -13.83154 -13.55913 -13.32844 -13.25085 -12.77388 -12.69098 -12.36381 -12.26072 -11.79930 -11.64648 -11.53625 -11.46983 -11.24247 -11.18587 -11.16227 -11.12688 -10.87275 -10.72023 -10.69301 -10.39710 -10.37341 -10.25904 -10.17178 -9.74629 -9.62703 -9.41775 -8.58892 -8.52109 -7.84160 -6.16065 -4.20807 -0.14042 0.88635 1.34749 1.46467 2.72807 3.11575 3.21175 3.30240 3.32792 3.61577 4.04702 4.30078 4.36114 4.41398 4.71140 4.76559 4.80686 4.83022 4.89136 5.08482 5.18292 5.19449 5.30928 5.39613 5.50694 5.52931 5.62165 5.63972 5.67777 5.72321 5.83273 5.88101 5.92256 5.99900 6.09129 6.09277 6.19396 6.26519 6.35977 6.42111 6.48741 6.64015 6.68689 6.75650 7.19974 7.30163 7.42293 7.68387 7.80241 8.10110 8.26668 8.75938 8.92365 9.44528 10.91373 Molecular weight = 349.18amu Principal moments of inertia in cm(-1) A = 0.010938 B = 0.003220 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.182326 B = 8693.104844 C =10366.477818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.104 4.104 4 C -0.125 4.125 5 C -0.156 4.156 6 C 0.111 3.889 7 N -0.593 5.593 8 C 0.241 3.759 9 C -0.532 4.532 10 H 0.056 0.944 11 C 0.065 3.935 12 N -0.891 5.891 13 Si 0.895 3.105 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.696 3.304 18 O -0.563 6.563 19 N -0.693 5.693 20 C 0.246 3.754 21 C -0.127 4.127 22 C -0.029 4.029 23 C -0.081 4.081 24 N 0.038 4.962 25 O -0.172 6.172 26 O -0.176 6.176 27 C -0.028 4.028 28 C -0.163 4.163 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.263 0.737 45 H 0.408 0.592 46 H 0.161 0.839 47 H 0.153 0.847 48 H 0.153 0.847 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.701 -5.038 8.924 17.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.124 4.124 4 C -0.162 4.162 5 C -0.213 4.213 6 C -0.014 4.014 7 N -0.326 5.326 8 C 0.122 3.878 9 C -0.571 4.571 10 H 0.074 0.926 11 C -0.138 4.138 12 N -0.529 5.529 13 Si 0.723 3.277 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.209 1.209 17 C 0.398 3.602 18 O -0.439 6.439 19 N -0.345 5.345 20 C 0.146 3.854 21 C -0.148 4.148 22 C -0.049 4.049 23 C -0.166 4.166 24 N 0.554 4.446 25 O -0.386 6.386 26 O -0.389 6.389 27 C -0.048 4.048 28 C -0.185 4.185 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.250 0.750 46 H 0.179 0.821 47 H 0.171 0.829 48 H 0.170 0.830 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.597 -4.757 8.723 16.043 hybrid contribution -0.375 0.912 -0.685 1.200 sum -12.971 -3.845 8.038 15.737 Atomic orbital electron populations 1.21909 0.96477 1.01452 1.00914 1.21631 0.95097 0.97062 1.02489 1.21674 0.97345 0.95951 0.97418 1.21728 0.94456 0.97948 1.02073 1.21891 1.00973 0.96440 1.01986 1.21575 0.94070 0.98782 0.86963 1.47601 1.16797 1.35069 1.33146 1.19773 0.74020 0.95969 0.98006 1.21476 0.92851 1.18362 1.24408 0.92604 1.24881 0.95328 0.97165 0.96407 1.69918 0.97545 1.42080 1.43377 0.86495 0.78088 0.81697 0.81446 1.19921 1.20914 1.20868 1.15952 0.80343 0.81829 0.82042 1.90938 1.60857 1.54648 1.37434 1.43703 1.11917 1.30333 1.48540 1.17957 0.91930 0.86291 0.89242 1.21311 1.02276 0.90206 1.01004 1.20914 0.91667 0.99484 0.92838 1.20987 0.96019 0.89448 1.10158 1.43591 1.00502 1.01970 0.98527 1.94527 1.60410 1.23709 1.59944 1.94502 1.01288 1.88011 1.55094 1.20708 1.00430 0.89801 0.93867 1.20835 0.95120 0.99770 1.02774 0.92709 0.92372 0.93710 0.91714 0.91826 0.90587 0.92975 0.89957 0.90654 0.93859 0.92745 0.89271 0.92535 0.91782 0.93864 0.92680 0.74957 0.82138 0.82926 0.82968 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.31 37.15 0.35 -0.89 16 2 C -0.13 -1.33 4.93 -26.73 -0.13 -1.46 16 3 C -0.10 -1.20 2.18 -90.62 -0.20 -1.39 16 4 C -0.12 -1.71 4.84 -26.74 -0.13 -1.84 16 5 C -0.16 -2.23 8.62 37.15 0.32 -1.91 16 6 C 0.11 1.48 4.87 -4.04 -0.02 1.46 16 7 N -0.59 -10.60 1.98 -180.80 -0.36 -10.96 16 8 C 0.24 5.51 3.76 -5.19 -0.02 5.49 16 9 C -0.53 -13.81 9.39 -34.44 -0.32 -14.13 16 10 H 0.06 1.47 7.81 -52.48 -0.41 1.06 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -24.68 13.29 55.43 0.74 -23.94 16 13 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.70 12.54 6.48 -86.91 -0.56 11.97 16 18 O -0.56 -12.52 13.58 5.29 0.07 -12.45 16 19 N -0.69 -9.06 4.04 -14.22 -0.06 -9.11 16 20 C 0.25 3.06 6.28 -83.69 -0.53 2.54 16 21 C -0.13 -1.69 8.65 -39.39 -0.34 -2.03 16 22 C -0.03 -0.36 9.55 -39.61 -0.38 -0.74 16 23 C -0.08 -1.02 6.85 -79.91 -0.55 -1.57 16 24 N 0.04 0.55 4.45 33.98 0.15 0.70 16 25 O -0.17 -2.59 18.44 -29.46 -0.54 -3.14 16 26 O -0.18 -2.55 18.44 -29.46 -0.54 -3.09 16 27 C -0.03 -0.29 9.55 -39.61 -0.38 -0.67 16 28 C -0.16 -1.61 9.96 -39.40 -0.39 -2.00 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.34 4.18 -51.93 -0.22 0.13 16 32 H 0.06 0.84 5.90 -51.93 -0.31 0.53 16 33 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 34 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 35 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 36 H 0.08 1.39 5.30 -51.93 -0.28 1.11 16 37 H 0.07 1.25 5.39 -51.93 -0.28 0.97 16 38 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.09 1.27 6.86 -51.93 -0.36 0.92 16 41 H 0.06 0.60 4.84 -51.93 -0.25 0.35 16 42 H 0.06 1.42 3.36 -51.93 -0.17 1.24 16 43 H 0.04 1.16 7.34 -51.93 -0.38 0.78 16 44 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.41 4.22 3.71 -40.82 -0.15 4.07 16 46 H 0.16 2.41 6.42 -52.49 -0.34 2.07 16 47 H 0.15 1.71 7.60 -52.49 -0.40 1.31 16 48 H 0.15 1.29 7.60 -52.49 -0.40 0.89 16 49 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 385.39 15.07 5.81 5.81 Total: -1.00 -30.69 385.39 -9.59 -40.28 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.45 Total: 5.66 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -3.38 Total: -5.55 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.47 Total: -43.32 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -1.01 Total: -18.68 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.69 -9.59 -40.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089943143.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.010 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds