Wall clock time and date at job start Tue Mar 31 2020 05:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38981 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99524 * 180.02562 * 7 2 1 9 9 N 1.36965 * 120.00221 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99720 * 180.27687 * 9 7 2 11 11 O 1.21663 * 120.00219 * 359.72007 * 10 9 7 12 12 C 1.47044 * 119.99524 * 179.72322 * 10 9 7 13 13 C 1.36715 * 126.97600 * 359.68196 * 12 10 9 14 14 N 1.34712 * 108.66402 * 179.89161 * 13 12 10 15 15 H 0.96998 * 124.72568 * 180.14664 * 14 13 12 16 16 C 1.36295 * 110.54123 * 0.38876 * 14 13 12 17 17 C 1.35730 * 108.69146 * 359.76291 * 16 14 13 18 18 C 1.48294 * 126.97715 * 180.02562 * 17 16 14 19 19 C 1.39391 * 120.07786 * 129.96890 * 18 17 16 20 20 C 1.38050 * 119.96759 * 180.02562 * 19 18 17 21 21 Cl 1.73588 * 119.89227 * 179.97438 * 20 19 18 22 22 C 1.38921 * 120.21834 * 359.97438 * 20 19 18 23 23 C 1.39040 * 120.01998 * 359.94643 * 22 20 19 24 24 C 1.38537 * 119.94734 * 359.83604 * 23 22 20 25 25 O 1.36134 * 120.77883 * 180.20945 * 23 22 20 26 26 C 1.43167 * 116.71489 * 342.71174 * 25 23 22 27 27 C 1.53473 * 108.22299 * 46.28011 * 26 25 23 28 28 O 1.36189 * 119.24935 * 179.80433 * 22 20 19 29 29 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99734 * 359.97438 * 9 7 2 31 31 H 1.08003 * 125.66720 * 0.03956 * 13 12 10 32 32 H 1.07996 * 125.65412 * 179.73952 * 16 14 13 33 33 H 1.08001 * 120.01887 * 0.07772 * 19 18 17 34 34 H 1.07994 * 120.00402 * 180.20346 * 24 23 22 35 35 H 1.08994 * 109.71699 * 286.59792 * 26 25 23 36 36 H 1.08998 * 109.71470 * 165.95641 * 26 25 23 37 37 H 1.08998 * 109.71101 * 180.52973 * 27 26 25 38 38 H 1.08994 * 109.74642 * 59.92161 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0090 -1.2037 0.0005 8 1 3.0890 -1.2036 0.0010 9 7 1.3241 -2.3898 0.0005 10 6 1.9980 -3.5570 0.0067 11 8 3.2147 -3.5570 0.0071 12 6 1.2627 -4.8303 0.0129 13 6 -0.0943 -4.9963 0.0192 14 7 -0.3673 -6.3154 0.0210 15 1 -1.2599 -6.6950 0.0233 16 6 0.7856 -7.0424 0.0246 17 6 1.8393 -6.1869 0.0199 18 6 3.2785 -6.5443 0.0209 19 6 4.1428 -5.9653 -0.9068 20 6 5.4821 -6.3001 -0.9041 21 17 6.5566 -5.5783 -2.0607 22 6 5.9728 -7.2127 0.0212 23 6 5.1148 -7.7917 0.9496 24 6 3.7710 -7.4550 0.9532 25 8 5.5799 -8.6845 1.8659 26 6 6.8555 -9.2766 1.5978 27 6 7.8228 -8.1621 1.1764 28 8 7.2967 -7.5317 0.0035 29 1 -0.4850 0.8400 -0.0004 30 1 0.3541 -2.3897 0.0005 31 1 -0.8259 -4.2018 0.0200 32 1 0.8500 -8.1204 0.0307 33 1 3.7651 -5.2544 -1.6268 34 1 3.1043 -7.9017 1.6760 35 1 6.7609 -10.0051 0.7926 36 1 7.2293 -9.7674 2.4964 37 1 8.8016 -8.5884 0.9568 38 1 7.9126 -7.4296 1.9784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095401844.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:43 Heat of formation + Delta-G solvation = -39.452955 kcal Electronic energy + Delta-G solvation = -27474.092205 eV Core-core repulsion = 23309.025835 eV Total energy + Delta-G solvation = -4165.066370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.071 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18727 -40.66255 -37.70261 -37.53380 -37.24079 -35.95230 -33.84813 -32.00800 -31.27445 -30.65090 -29.83947 -28.87514 -27.58646 -24.98225 -24.72640 -22.82353 -21.94143 -21.31416 -19.63442 -18.86382 -18.40156 -18.18372 -17.29003 -17.26738 -16.77492 -15.45676 -15.34694 -15.11528 -14.64233 -14.42521 -14.33298 -14.26514 -14.03334 -13.91207 -13.76938 -13.41450 -13.17948 -12.84318 -12.45394 -12.28861 -11.89193 -11.82313 -11.61213 -11.38987 -11.08468 -11.03057 -10.72614 -10.55641 -10.44815 -10.40011 -10.15275 -9.46533 -8.61968 -8.38909 -8.12945 -8.00680 -7.87918 -7.51558 -6.39747 -3.74561 1.25458 1.48994 2.39483 2.42208 2.67153 3.11901 3.18041 3.28802 3.29131 3.34259 3.50149 3.89180 4.16304 4.22299 4.56212 4.68434 4.74780 4.79455 5.03403 5.08379 5.12964 5.32282 5.38828 5.42858 5.44982 5.45763 5.60425 5.80165 5.98942 6.09980 6.14131 6.32126 6.60252 6.76542 6.77711 6.92508 7.10625 7.25012 7.41888 7.58841 7.71865 8.14515 8.69535 9.23963 9.62569 10.18027 10.78399 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.011344 B = 0.003457 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.633389 B = 8098.036084 C = 9652.824646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.290 4.290 8 H 0.105 0.895 9 N -0.556 5.556 10 C 0.503 3.497 11 O -0.586 6.586 12 C -0.167 4.167 13 C 0.017 3.983 14 N -0.553 5.553 15 H 0.414 0.586 16 C -0.005 4.005 17 C -0.097 4.097 18 C 0.024 3.976 19 C -0.044 4.044 20 C -0.029 4.029 21 Cl -0.058 7.058 22 C 0.048 3.952 23 C 0.050 3.950 24 C -0.104 4.104 25 O -0.306 6.306 26 C 0.021 3.979 27 C 0.020 3.980 28 O -0.298 6.298 29 H 0.272 0.728 30 H 0.390 0.610 31 H 0.172 0.828 32 H 0.167 0.833 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.462 -19.618 1.145 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.181 4.181 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.420 4.420 8 H 0.123 0.877 9 N -0.191 5.191 10 C 0.291 3.709 11 O -0.471 6.471 12 C -0.176 4.176 13 C -0.117 4.117 14 N -0.147 5.147 15 H 0.250 0.750 16 C -0.135 4.135 17 C -0.104 4.104 18 C 0.022 3.978 19 C -0.063 4.063 20 C -0.057 4.057 21 Cl -0.030 7.030 22 C 0.002 3.998 23 C 0.006 3.994 24 C -0.123 4.123 25 O -0.220 6.220 26 C -0.054 4.054 27 C -0.056 4.056 28 O -0.213 6.213 29 H 0.081 0.919 30 H 0.223 0.777 31 H 0.190 0.810 32 H 0.184 0.816 33 H 0.164 0.836 34 H 0.154 0.846 35 H 0.093 0.907 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.175 -19.430 1.059 20.136 hybrid contribution -0.370 0.769 0.125 0.862 sum 4.805 -18.662 1.184 19.307 Atomic orbital electron populations 1.69596 1.05956 1.28242 1.50531 1.25256 0.95625 0.99705 0.97492 0.85924 0.78781 0.80441 0.79159 1.19842 1.21036 1.19888 1.19706 0.93524 0.82225 1.46529 0.87745 1.41760 1.09030 1.04508 1.63782 1.16988 0.87230 0.82290 0.84419 1.90635 1.13020 1.86963 1.56526 1.20877 0.91719 0.93658 1.11380 1.21967 0.96838 0.85433 1.07459 1.41325 1.08327 1.06162 1.58888 0.75036 1.21648 0.84359 0.96737 1.10739 1.18792 0.90219 0.91596 1.09836 1.17522 0.91445 0.94915 0.93875 1.20956 0.89315 0.96998 0.99031 1.19934 0.91747 0.98122 0.95863 1.98343 1.64772 1.82205 1.57636 1.18443 0.83489 0.98910 0.98931 1.18413 0.92822 0.94828 0.93361 1.20432 0.91530 1.00294 1.00028 1.86311 1.35639 1.55642 1.44455 1.23582 0.83049 0.95137 1.03666 1.23608 0.97984 0.95593 0.88416 1.86379 1.20519 1.76140 1.38247 0.91857 0.77654 0.81047 0.81553 0.83605 0.84646 0.90656 0.86342 0.86281 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 2 C 0.02 0.55 5.50 -17.45 -0.10 0.46 16 3 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.29 -8.12 9.68 -14.98 -0.15 -8.26 16 8 H 0.10 3.07 7.15 -52.49 -0.38 2.69 16 9 N -0.56 -14.22 5.27 -12.06 -0.06 -14.29 16 10 C 0.50 12.35 7.75 -12.69 -0.10 12.25 16 11 O -0.59 -16.04 13.60 5.22 0.07 -15.96 16 12 C -0.17 -3.26 6.29 -103.15 -0.65 -3.90 16 13 C 0.02 0.25 11.39 -16.84 -0.19 0.06 16 14 N -0.55 -6.33 5.88 -12.60 -0.07 -6.40 16 15 H 0.41 3.00 8.96 -40.82 -0.37 2.63 16 16 C -0.01 -0.07 11.80 -16.47 -0.19 -0.26 16 17 C -0.10 -1.65 5.78 -102.93 -0.60 -2.24 16 18 C 0.02 0.42 5.40 -104.93 -0.57 -0.15 16 19 C -0.04 -0.83 7.69 -39.22 -0.30 -1.13 16 20 C -0.03 -0.52 6.33 -39.40 -0.25 -0.77 16 21 Cl -0.06 -1.00 28.44 -51.86 -1.47 -2.47 16 22 C 0.05 0.79 6.50 -39.03 -0.25 0.53 16 23 C 0.05 0.78 6.49 -39.17 -0.25 0.53 16 24 C -0.10 -1.62 9.63 -39.07 -0.38 -2.00 16 25 O -0.31 -4.06 10.41 -32.95 -0.34 -4.40 16 26 C 0.02 0.19 7.26 37.40 0.27 0.46 16 27 C 0.02 0.19 7.26 37.40 0.27 0.47 16 28 O -0.30 -4.32 9.82 -33.13 -0.33 -4.64 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.39 9.40 6.83 -40.82 -0.28 9.12 16 31 H 0.17 2.35 7.44 -52.48 -0.39 1.96 16 32 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.15 2.99 7.45 -52.49 -0.39 2.60 16 34 H 0.14 1.83 8.06 -52.49 -0.42 1.40 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -34.47 346.94 -8.18 -42.65 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -3.47 Total: 11.66 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -3.43 Total: -3.96 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.59 Total: -44.30 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.60 Total: -25.01 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.47 Total: -2.47 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.47 -8.18 -42.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095401844.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.197 kcal (2) G-P(sol) polarization free energy of solvation -34.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds