Wall clock time and date at job start Tue Mar 31 2020 05:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99931 * 2 1 4 4 C 1.52995 * 109.47464 * 270.00227 * 3 2 1 5 5 C 1.50706 * 109.47197 * 180.02562 * 4 3 2 6 6 C 1.33390 * 125.20509 * 90.00027 * 5 4 3 7 7 C 1.38423 * 114.92258 * 179.97438 * 6 5 4 8 8 C 1.33395 * 114.91760 * 359.97438 * 7 6 5 9 9 S 1.75883 * 125.20050 * 269.69109 * 5 4 3 10 10 C 1.34773 * 120.00095 * 180.02562 * 2 1 3 11 11 O 1.21588 * 120.00151 * 179.72667 * 10 2 1 12 12 N 1.34784 * 119.99935 * 359.97438 * 10 2 1 13 13 C 1.40186 * 119.99960 * 179.72955 * 12 10 2 14 14 C 1.40405 * 125.97412 * 359.71044 * 13 12 10 15 15 C 1.35250 * 107.86547 * 179.86549 * 14 13 12 16 16 N 1.34959 * 107.86052 * 0.40064 * 15 14 13 17 17 C 1.46501 * 125.97948 * 179.72947 * 16 15 14 18 18 C 1.52993 * 109.47334 * 124.99377 * 17 16 15 19 19 C 1.50703 * 109.46919 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00255 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99890 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99881 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99987 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47167 * 60.00373 * 23 21 19 25 25 H 1.48504 * 109.47006 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47391 * 300.00138 * 23 21 19 27 27 N 1.31212 * 125.97112 * 180.02562 * 13 12 10 28 28 H 1.09000 * 109.47191 * 269.99858 * 1 2 3 29 29 H 1.09004 * 109.46976 * 30.00047 * 1 2 3 30 30 H 1.08998 * 109.47074 * 149.99450 * 1 2 3 31 31 H 1.09003 * 109.47023 * 30.00279 * 3 2 1 32 32 H 1.09002 * 109.46896 * 149.99872 * 3 2 1 33 33 H 1.09003 * 109.47043 * 300.00040 * 4 3 2 34 34 H 1.09002 * 109.47353 * 59.99925 * 4 3 2 35 35 H 1.08004 * 122.53683 * 359.95202 * 6 5 4 36 36 H 1.07993 * 122.53782 * 180.02562 * 7 6 5 37 37 H 1.07997 * 125.19941 * 180.02562 * 8 7 6 38 38 H 0.97005 * 119.99846 * 359.72693 * 12 10 2 39 39 H 1.07997 * 126.06333 * 0.02738 * 14 13 12 40 40 H 1.08001 * 126.06956 * 180.14673 * 15 14 13 41 41 H 1.09001 * 109.47326 * 245.00123 * 17 16 15 42 42 H 1.09000 * 109.46793 * 4.99190 * 17 16 15 43 43 H 1.08999 * 109.47670 * 299.99863 * 18 17 16 44 44 H 1.09000 * 109.46889 * 60.00439 * 18 17 16 45 45 H 0.97000 * 120.00013 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2066 3.0153 -1.4424 6 6 4.5350 3.1358 -1.4425 7 6 5.0026 4.4387 -1.4430 8 6 4.0537 5.3763 -1.4437 9 16 2.4695 4.6122 -1.4498 10 6 2.1389 -1.1672 -0.0005 11 8 3.3548 -1.1672 -0.0055 12 7 1.4650 -2.3344 -0.0005 13 6 2.1659 -3.5485 -0.0068 14 6 3.5623 -3.6946 -0.0192 15 6 3.8411 -5.0180 -0.0187 16 7 2.6694 -5.6878 -0.0155 17 6 2.5105 -7.1441 -0.0195 18 6 1.6383 -7.5653 1.1648 19 6 1.4744 -9.0634 1.1602 20 1 1.9456 -9.6558 0.3899 21 6 0.7238 -9.6778 2.1401 22 7 0.1504 -8.9564 3.0784 23 14 0.5212 -11.5347 2.1348 24 1 1.8546 -12.1785 2.2480 25 1 -0.3255 -11.9435 3.2843 26 1 -0.1271 -11.9584 0.8678 27 7 1.6317 -4.7469 -0.0080 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5139 31 1 1.6084 2.0283 0.5139 32 1 3.1499 1.1383 0.5139 33 1 3.0416 0.9508 -1.9563 34 1 1.5001 1.8408 -1.9563 35 1 5.1958 2.2814 -1.4420 36 1 6.0557 4.6779 -1.4436 37 1 4.2312 6.4415 -1.4445 38 1 0.4950 -2.3344 0.0039 39 1 4.2854 -2.8924 -0.0251 40 1 4.8263 -5.4603 -0.0244 41 1 2.0351 -7.4552 -0.9497 42 1 3.4893 -7.6166 0.0639 43 1 2.1138 -7.2544 2.0950 44 1 0.6596 -7.0929 1.0813 45 1 -0.3780 -9.3885 3.7676 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095403979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:38 Heat of formation + Delta-G solvation = 93.837082 kcal Electronic energy + Delta-G solvation = -26544.326842 eV Core-core repulsion = 22691.043009 eV Total energy + Delta-G solvation = -3853.283833 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.05279 -40.00792 -38.29015 -36.24719 -35.07944 -33.90761 -32.86043 -31.76248 -29.67156 -28.68476 -28.30155 -26.89836 -25.11415 -24.38252 -22.88393 -21.65099 -21.36016 -20.08330 -19.57899 -19.45973 -18.09993 -17.49915 -17.07095 -16.47499 -16.02472 -15.80499 -15.67765 -14.90161 -14.74504 -14.64668 -14.28665 -13.96344 -13.71250 -13.45935 -13.27491 -13.17690 -12.86762 -12.71762 -12.64199 -12.51248 -12.42112 -12.30614 -12.16189 -11.51754 -11.32726 -11.06795 -11.00402 -10.86849 -10.58246 -10.39651 -9.99580 -9.86810 -9.67928 -9.31011 -9.27205 -8.81679 -8.79582 -8.44073 -8.36960 -7.67550 -6.08234 -4.13709 0.64620 1.28450 1.65275 2.14773 2.36565 2.44344 2.88474 3.11888 3.28884 3.33790 3.35678 3.61823 3.85531 4.39503 4.45561 4.61231 4.72381 4.75687 4.81260 4.98687 5.13022 5.18145 5.26522 5.27709 5.28636 5.33721 5.42817 5.46904 5.70975 5.82557 5.93037 5.97825 6.01817 6.14421 6.17246 6.18694 6.27216 6.51652 6.58319 6.69295 7.23286 7.49503 7.56960 7.65723 7.71662 7.93972 8.23434 8.35852 8.42019 8.92417 9.50786 11.02775 Molecular weight = 348.14amu Principal moments of inertia in cm(-1) A = 0.032780 B = 0.001579 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.984958 B =17731.501916 C =18317.092449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.631 5.631 3 C 0.142 3.858 4 C -0.066 4.066 5 C -0.167 4.167 6 C -0.136 4.136 7 C -0.131 4.131 8 C -0.217 4.217 9 S 0.088 5.912 10 C 0.715 3.285 11 O -0.563 6.563 12 N -0.644 5.644 13 C 0.289 3.711 14 C -0.278 4.278 15 C 0.055 3.945 16 N -0.342 5.342 17 C 0.134 3.866 18 C 0.016 3.984 19 C -0.530 4.530 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.889 5.889 23 Si 0.897 3.103 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 N -0.309 5.309 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.162 0.838 38 H 0.409 0.591 39 H 0.165 0.835 40 H 0.171 0.829 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.021 0.979 44 H 0.033 0.967 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.518 28.798 -9.390 30.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.368 5.368 3 C 0.018 3.982 4 C -0.107 4.107 5 C -0.285 4.285 6 C -0.166 4.166 7 C -0.162 4.162 8 C -0.352 4.352 9 S 0.351 5.649 10 C 0.416 3.584 11 O -0.438 6.438 12 N -0.295 5.295 13 C 0.034 3.966 14 C -0.309 4.309 15 C -0.093 4.093 16 N -0.125 5.125 17 C 0.014 3.986 18 C -0.022 4.022 19 C -0.569 4.569 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.527 5.527 23 Si 0.725 3.275 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 N -0.140 5.140 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.161 0.839 36 H 0.157 0.843 37 H 0.180 0.820 38 H 0.246 0.754 39 H 0.183 0.817 40 H 0.188 0.812 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.039 0.961 44 H 0.052 0.948 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.709 28.557 -9.230 30.134 hybrid contribution 1.424 -0.997 0.113 1.742 sum 4.134 27.561 -9.118 29.323 Atomic orbital electron populations 1.21840 0.79430 1.03358 1.02400 1.46966 1.06561 1.04615 1.78675 1.21340 0.98241 0.83059 0.95586 1.20568 0.99808 0.91773 0.98548 1.24365 0.97056 0.97593 1.09486 1.20248 0.94503 0.98144 1.03680 1.20216 1.00703 0.92045 1.03193 1.25597 0.95222 1.03364 1.11034 1.84263 1.09163 0.98069 1.73428 1.15561 0.85128 0.79751 0.77938 1.90860 1.11115 1.85442 1.56430 1.41604 1.09732 1.01815 1.76381 1.18789 0.90980 0.85102 1.01700 1.21611 0.94281 0.96155 1.18856 1.22596 0.92153 0.92501 1.02094 1.48772 1.02254 1.06885 1.54579 1.22276 1.02576 0.70769 1.02932 1.19353 0.95340 0.96343 0.91157 1.21004 1.32446 0.91421 1.11991 0.92352 1.24996 0.95333 0.98474 0.95303 1.69974 1.32808 1.35592 1.14306 0.86579 0.78183 0.85165 0.77606 1.20125 1.21208 1.20117 1.77355 1.12175 0.95404 1.29051 0.91973 0.90452 0.91152 0.90181 0.88986 0.89130 0.90657 0.83931 0.84271 0.82022 0.75442 0.81740 0.81150 0.90793 0.89534 0.96083 0.94848 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 10.20 59.85 0.61 1.07 16 2 N -0.63 -6.05 2.87 -187.35 -0.54 -6.59 16 3 C 0.14 1.18 5.39 -4.05 -0.02 1.16 16 4 C -0.07 -0.52 6.03 -27.88 -0.17 -0.69 16 5 C -0.17 -1.34 5.76 -36.00 -0.21 -1.55 16 6 C -0.14 -1.11 10.05 -41.21 -0.41 -1.53 16 7 C -0.13 -0.94 10.18 -41.21 -0.42 -1.36 16 8 C -0.22 -1.45 11.23 29.04 0.33 -1.12 16 9 S 0.09 0.61 23.33 -107.50 -2.51 -1.89 16 10 C 0.72 9.83 8.25 -86.91 -0.72 9.11 16 11 O -0.56 -9.31 13.05 5.29 0.07 -9.24 16 12 N -0.64 -9.36 5.32 -15.51 -0.08 -9.45 16 13 C 0.29 5.33 8.11 -154.37 -1.25 4.08 16 14 C -0.28 -4.97 9.61 -39.83 -0.38 -5.35 16 15 C 0.05 0.94 11.44 -17.24 -0.20 0.75 16 16 N -0.34 -6.84 3.68 -61.38 -0.23 -7.07 16 17 C 0.13 2.74 6.44 -4.04 -0.03 2.71 16 18 C 0.02 0.41 5.16 -27.88 -0.14 0.27 16 19 C -0.53 -14.57 9.11 -34.44 -0.31 -14.88 16 20 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 23 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 27 N -0.31 -6.44 12.43 31.44 0.39 -6.05 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.32 8.07 -51.93 -0.42 -0.09 16 30 H 0.07 0.42 6.37 -51.93 -0.33 0.09 16 31 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 32 H 0.09 0.93 7.42 -51.93 -0.39 0.55 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 36 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.16 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.41 4.90 6.56 -40.82 -0.27 4.63 16 39 H 0.17 2.91 5.91 -52.49 -0.31 2.60 16 40 H 0.17 2.25 8.06 -52.49 -0.42 1.82 16 41 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 42 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 394.84 15.07 5.95 5.95 Total: -1.00 -34.45 394.84 -10.97 -45.43 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.32 Total: 4.29 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -3.42 Total: -5.70 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.28 Total: -55.01 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.07 Total: -9.24 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -2.51 Total: -1.89 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.45 -10.97 -45.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095403979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.264 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds