Wall clock time and date at job start Tue Mar 31 2020 06:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47186 * 2 1 4 4 O 1.42898 * 109.46976 * 179.97438 * 3 2 1 5 5 C 1.35676 * 116.99713 * 179.97438 * 4 3 2 6 6 C 1.38690 * 120.14242 * 0.02562 * 5 4 3 7 7 C 1.38056 * 120.10659 * 179.97438 * 6 5 4 8 8 C 1.38641 * 120.37511 * 359.97438 * 7 6 5 9 9 Cl 1.73604 * 119.86350 * 180.02562 * 8 7 6 10 10 C 1.37891 * 120.27384 * 359.78790 * 8 7 6 11 11 C 1.39715 * 119.89558 * 0.46772 * 10 8 7 12 12 C 1.47514 * 120.18902 * 179.79344 * 11 10 8 13 13 O 1.21620 * 120.00269 * 179.72208 * 12 11 10 14 14 N 1.34779 * 120.00235 * 359.71660 * 12 11 10 15 15 C 1.40535 * 120.00218 * 180.02562 * 14 12 11 16 16 C 1.40654 * 126.08591 * 359.97108 * 15 14 12 17 17 N 1.30911 * 108.38978 * 179.76286 * 16 15 14 18 18 N 1.40070 * 108.40743 * 0.41060 * 17 16 15 19 19 C 1.37314 * 126.06793 * 179.85056 * 18 17 16 20 20 H 1.07998 * 120.00425 * 185.44873 * 19 18 17 21 21 C 1.38989 * 119.99795 * 5.17653 * 19 18 17 22 22 N 1.31295 * 120.00227 * 354.31110 * 21 19 18 23 23 Si 1.86803 * 120.00145 * 174.31102 * 21 19 18 24 24 H 1.48494 * 109.47248 * 94.97708 * 23 21 19 25 25 H 1.48500 * 109.47261 * 214.98192 * 23 21 19 26 26 H 1.48504 * 109.47046 * 334.98228 * 23 21 19 27 27 C 1.35695 * 126.08453 * 179.97438 * 15 14 12 28 28 H 1.09006 * 109.47196 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47621 * 299.99962 * 1 2 3 30 30 H 1.09008 * 109.47021 * 60.00154 * 1 2 3 31 31 H 1.09001 * 109.47033 * 240.00065 * 2 1 3 32 32 H 1.09000 * 109.46752 * 120.00405 * 2 1 3 33 33 H 1.09001 * 109.47081 * 60.00095 * 3 2 1 34 34 H 1.09000 * 109.47130 * 300.00118 * 3 2 1 35 35 H 1.08009 * 119.94786 * 0.02562 * 6 5 4 36 36 H 1.08001 * 119.81293 * 179.97438 * 7 6 5 37 37 H 1.08005 * 120.05344 * 180.25078 * 10 8 7 38 38 H 0.97007 * 119.99748 * 0.02562 * 14 12 11 39 39 H 1.08005 * 125.80739 * 0.05065 * 16 15 14 40 40 H 0.96997 * 120.00133 * 179.97438 * 22 21 19 41 41 H 1.08001 * 126.24527 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0849 2.6513 0.0001 6 6 3.3324 3.8163 -0.0003 7 6 3.9600 5.0460 -0.0003 8 6 5.3440 5.1268 0.0008 9 17 6.1193 6.6801 0.0015 10 6 6.1074 3.9785 0.0062 11 6 5.4842 2.7280 0.0008 12 6 6.2945 1.4954 0.0019 13 8 5.7485 0.4086 0.0023 14 7 7.6401 1.5734 0.0025 15 6 8.4121 0.3991 0.0030 16 6 7.9174 -0.9176 0.0037 17 7 8.9350 -1.7411 -0.0011 18 7 10.1149 -0.9863 0.0046 19 6 11.3940 -1.4856 0.0050 20 1 12.2355 -0.8151 0.0985 21 6 11.6057 -2.8545 -0.1091 22 7 10.5842 -3.6794 -0.1049 23 14 13.3435 -3.5209 -0.2685 24 1 13.8483 -3.9127 1.0719 25 1 13.3388 -4.7071 -1.1619 26 1 14.2249 -2.4725 -0.8423 27 6 9.7675 0.3337 0.0031 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.2537 3.7615 0.0001 36 1 3.3693 5.9502 -0.0011 37 1 7.1853 4.0456 0.0111 38 1 8.0756 2.4402 0.0025 39 1 6.8752 -1.2010 0.0030 40 1 10.7319 -4.6347 -0.1849 41 1 10.4472 1.1729 0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095407893.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:58 Heat of formation + Delta-G solvation = 28.550846 kcal Electronic energy + Delta-G solvation = -27150.659899 eV Core-core repulsion = 23058.949579 eV Total energy + Delta-G solvation = -4091.710320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.098 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.72532 -39.65883 -38.39795 -37.81269 -36.36956 -34.29191 -33.96573 -33.17690 -31.60402 -30.16651 -29.93265 -27.73871 -26.75388 -25.07283 -23.99737 -22.66700 -21.60946 -20.97546 -20.42048 -19.34517 -18.51775 -17.60469 -17.00281 -16.48687 -16.38179 -15.59974 -15.36426 -15.01448 -14.89980 -14.76964 -14.26477 -14.08664 -13.96154 -13.40702 -13.32039 -13.03022 -13.02072 -12.84816 -12.58069 -12.21654 -12.08109 -11.78865 -11.64540 -11.37695 -11.27090 -11.24954 -11.18066 -11.08603 -10.89503 -10.66777 -10.50823 -10.10630 -9.38952 -9.14875 -9.11550 -8.76436 -8.34225 -8.01281 -6.64206 -6.53226 -4.18856 0.62087 0.95891 1.91179 2.83201 2.95781 3.00951 3.07205 3.12561 3.52731 3.56379 3.88656 3.90132 4.36645 4.43502 4.51656 4.66005 4.66332 4.77132 4.80961 4.94425 5.04496 5.04747 5.14793 5.14859 5.27232 5.39036 5.45638 5.56226 5.75419 5.84957 5.86606 5.87688 6.04207 6.21841 6.28864 6.50986 6.94178 7.00411 7.16043 7.22230 7.28227 7.89801 8.22500 8.32090 8.67713 8.91199 9.41849 9.71160 10.43054 Molecular weight = 349.10amu Principal moments of inertia in cm(-1) A = 0.010380 B = 0.002674 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.906024 B =10468.295931 C =13135.529438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.051 3.949 4 O -0.269 6.269 5 C 0.192 3.808 6 C -0.210 4.210 7 C -0.050 4.050 8 C -0.083 4.083 9 Cl -0.070 7.070 10 C -0.042 4.042 11 C -0.144 4.144 12 C 0.542 3.458 13 O -0.509 6.509 14 N -0.620 5.620 15 C -0.056 4.056 16 C -0.031 4.031 17 N -0.261 5.261 18 N -0.143 5.143 19 C -0.323 4.323 20 H 0.116 0.884 21 C 0.046 3.954 22 N -0.769 5.769 23 Si 0.933 3.067 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.264 1.264 27 C -0.084 4.084 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.394 0.606 39 H 0.177 0.823 40 H 0.274 0.726 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.337 16.635 0.021 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.024 4.024 4 O -0.180 6.180 5 C 0.142 3.858 6 C -0.229 4.229 7 C -0.069 4.069 8 C -0.110 4.110 9 Cl -0.041 7.041 10 C -0.062 4.062 11 C -0.148 4.148 12 C 0.329 3.671 13 O -0.386 6.386 14 N -0.263 5.263 15 C -0.162 4.162 16 C -0.207 4.207 17 N -0.092 5.092 18 N 0.089 4.911 19 C -0.455 4.455 20 H 0.134 0.866 21 C -0.171 4.171 22 N -0.396 5.396 23 Si 0.757 3.243 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.188 1.188 27 C -0.235 4.235 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.161 0.839 38 H 0.228 0.772 39 H 0.194 0.806 40 H 0.085 0.915 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.275 14.272 0.006 20.905 hybrid contribution 0.682 1.581 -0.056 1.722 sum -14.593 15.853 -0.050 21.547 Atomic orbital electron populations 1.21690 0.94432 1.02560 1.01850 1.21465 0.95530 0.94601 1.04596 1.23016 0.78772 0.99483 1.01127 1.86444 1.20633 1.24947 1.85951 1.19047 0.90904 0.85034 0.90787 1.21172 1.00552 0.91237 1.09935 1.20922 0.92325 0.98074 0.95572 1.20567 0.92871 0.86649 1.10906 1.98368 1.81171 1.27311 1.97286 1.21085 1.00361 0.89413 0.95313 1.19443 0.91041 0.93763 1.10568 1.17601 0.81720 0.88138 0.79673 1.90731 1.71112 1.27786 1.48933 1.42402 1.04925 1.07613 1.71408 1.17230 0.89289 0.86086 1.23582 1.24134 0.99585 0.89179 1.07765 1.78249 0.88242 1.17019 1.25702 1.44536 1.05540 1.01768 1.39218 1.19859 0.80065 0.92685 1.52929 0.86648 1.25637 0.99912 0.95979 0.95537 1.70224 1.30424 1.03708 1.35229 0.85834 0.80602 0.79071 0.78768 1.19694 1.20065 1.18763 1.21256 0.93563 0.88640 1.19996 0.91675 0.92542 0.92549 0.90386 0.90385 0.91988 0.91980 0.84057 0.84427 0.83917 0.77222 0.80633 0.91511 0.83693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -1.20 6.30 -26.73 -0.17 -1.36 16 3 C 0.05 0.50 4.74 37.16 0.18 0.68 16 4 O -0.27 -3.92 8.21 -40.62 -0.33 -4.25 16 5 C 0.19 2.56 6.70 -38.70 -0.26 2.30 16 6 C -0.21 -2.04 9.03 -39.48 -0.36 -2.40 16 7 C -0.05 -0.45 9.81 -39.50 -0.39 -0.84 16 8 C -0.08 -0.86 6.31 -39.56 -0.25 -1.11 16 9 Cl -0.07 -0.66 28.94 -51.86 -1.50 -2.16 16 10 C -0.04 -0.49 9.31 -39.16 -0.36 -0.86 16 11 C -0.14 -2.10 5.89 -104.85 -0.62 -2.72 16 12 C 0.54 10.23 7.73 -12.48 -0.10 10.13 16 13 O -0.51 -11.44 12.30 -16.63 -0.20 -11.64 16 14 N -0.62 -11.55 5.41 -10.94 -0.06 -11.61 16 15 C -0.06 -1.33 6.90 -83.86 -0.58 -1.91 16 16 C -0.03 -0.83 10.85 -17.03 -0.18 -1.02 16 17 N -0.26 -7.71 10.41 30.80 0.32 -7.38 16 18 N -0.14 -3.97 3.74 -11.41 -0.04 -4.02 16 19 C -0.32 -8.64 10.24 -14.82 -0.15 -8.79 16 20 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 21 C 0.05 1.21 5.50 -17.50 -0.10 1.12 16 22 N -0.77 -21.70 11.83 55.50 0.66 -21.04 16 23 Si 0.93 19.09 29.56 -169.99 -5.02 14.07 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 27 C -0.08 -2.00 11.49 -16.39 -0.19 -2.19 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.49 7.66 -51.93 -0.40 0.10 16 34 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 35 H 0.14 0.98 6.30 -52.48 -0.33 0.65 16 36 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.14 1.42 6.40 -52.48 -0.34 1.09 16 38 H 0.39 5.71 6.86 -40.82 -0.28 5.43 16 39 H 0.18 4.70 5.91 -52.48 -0.31 4.39 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.15 2.88 8.06 -52.49 -0.42 2.46 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -34.36 366.20 -8.38 -42.74 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -4.56 Total: 9.38 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -3.15 Total: -9.59 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.88 Total: -44.05 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.54 Total: -15.90 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.36 -8.38 -42.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095407893.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.290 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds