Wall clock time and date at job start Tue Mar 31 2020 05:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47392 * 2 1 4 4 C 1.50704 * 109.47262 * 239.99897 * 2 1 3 5 5 C 1.34515 * 125.78803 * 99.71479 * 4 2 1 6 6 C 1.41382 * 106.84208 * 179.89257 * 5 4 2 7 7 C 1.34519 * 106.83734 * 0.37252 * 6 5 4 8 8 O 1.34297 * 108.42039 * 359.77136 * 7 6 5 9 9 N 1.46509 * 109.47155 * 120.00362 * 2 1 3 10 10 C 1.34782 * 119.99692 * 235.06976 * 9 2 1 11 11 O 1.21580 * 119.99873 * 186.11179 * 10 9 2 12 12 N 1.34775 * 119.99640 * 6.10518 * 10 9 2 13 13 C 1.46508 * 119.99597 * 185.18386 * 12 10 9 14 14 C 1.53069 * 109.45170 * 84.79146 * 13 12 10 15 15 C 1.53188 * 109.29518 * 181.24365 * 14 13 12 16 16 N 1.46926 * 108.89436 * 305.58245 * 15 14 13 17 17 C 1.36945 * 120.63117 * 233.51804 * 16 15 14 18 18 H 1.07994 * 120.00175 * 144.68921 * 17 16 15 19 19 C 1.38809 * 119.99470 * 324.69137 * 17 16 15 20 20 N 1.31624 * 120.00509 * 4.32775 * 19 17 16 21 21 Si 1.86807 * 119.99882 * 184.33161 * 19 17 16 22 22 H 1.48495 * 109.46749 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47233 * 119.99678 * 21 19 17 24 24 H 1.48498 * 109.47199 * 239.99642 * 21 19 17 25 25 C 1.46921 * 118.74297 * 53.53319 * 16 15 14 26 26 C 1.53038 * 109.46020 * 205.00524 * 13 12 10 27 27 C 1.46493 * 120.00280 * 55.06798 * 9 2 1 28 28 C 1.52995 * 117.50235 * 196.62473 * 27 9 2 29 29 C 1.53002 * 117.49968 * 127.96568 * 27 9 2 30 30 H 1.08994 * 109.47659 * 60.00247 * 1 2 3 31 31 H 1.09008 * 109.47368 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47262 * 299.99542 * 1 2 3 33 33 H 1.07996 * 126.57731 * 0.02883 * 5 4 2 34 34 H 1.08000 * 126.58169 * 180.16875 * 6 5 4 35 35 H 1.08007 * 125.78591 * 179.75450 * 7 6 5 36 36 H 0.96993 * 120.00868 * 5.19439 * 12 10 9 37 37 H 1.09005 * 109.45680 * 324.97722 * 13 12 10 38 38 H 1.08995 * 109.39181 * 61.36727 * 14 13 12 39 39 H 1.09002 * 109.62161 * 301.26087 * 14 13 12 40 40 H 1.09003 * 109.59284 * 185.72164 * 15 14 13 41 41 H 1.09001 * 109.59044 * 65.43882 * 15 14 13 42 42 H 0.97001 * 120.00038 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.58411 * 66.18074 * 25 16 15 44 44 H 1.09003 * 109.59070 * 186.46706 * 25 16 15 45 45 H 1.09000 * 109.49860 * 58.65872 * 26 13 12 46 46 H 1.08996 * 109.49582 * 298.56804 * 26 13 12 47 47 H 1.09001 * 115.54772 * 342.30094 * 27 9 2 48 48 H 1.09003 * 117.49808 * 0.02562 * 28 27 9 49 49 H 1.08996 * 117.50018 * 145.01760 * 28 27 9 50 50 H 1.09005 * 117.49815 * 214.97818 * 29 27 9 51 51 H 1.08997 * 117.49513 * 359.97438 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.4681 -0.1192 -2.3574 6 6 2.8432 -1.1542 -3.2444 7 6 2.6064 -2.3163 -2.6095 8 8 2.1153 -2.0413 -1.3902 9 7 2.0183 -0.6907 1.1962 10 6 2.8730 -0.0682 2.0320 11 8 3.3649 -0.6768 2.9625 12 7 3.1826 1.2288 1.8360 13 6 4.1965 1.8744 2.6736 14 6 5.5863 1.6019 2.0930 15 6 6.6454 2.2523 2.9885 16 7 6.3238 3.6770 3.1481 17 6 7.2570 4.6388 2.8662 18 1 6.9496 5.5789 2.4327 19 6 8.5981 4.4052 3.1378 20 7 8.9838 3.2293 3.5862 21 14 9.8556 5.7598 2.8669 22 1 9.1711 6.9766 2.3611 23 1 10.5333 6.0702 4.1513 24 1 10.8622 5.3091 1.8725 25 6 4.9821 4.0503 3.6161 26 6 3.9411 3.3829 2.7118 27 6 1.5776 -2.0578 1.4839 28 6 1.7913 -2.5849 2.9042 29 6 2.6585 -3.1061 1.7555 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.5232 0.9426 -2.5472 34 1 3.2403 -1.0349 -4.2416 35 1 2.7813 -3.3031 -3.0123 36 1 2.7341 1.7348 1.1407 37 1 4.1424 1.4713 3.6850 38 1 5.6487 2.0243 1.0901 39 1 5.7593 0.5267 2.0468 40 1 7.6276 2.1489 2.5272 41 1 6.6472 1.7666 3.9643 42 1 9.9210 3.0660 3.7756 43 1 4.8457 3.7107 4.6428 44 1 4.8675 5.1334 3.5712 45 1 2.9423 3.5730 3.1048 46 1 4.0196 3.7907 1.7040 47 1 0.6817 -2.3840 0.9555 48 1 2.2595 -1.9143 3.6247 49 1 1.0363 -3.2580 3.3102 50 1 2.4734 -4.1220 1.4063 51 1 3.6974 -2.7786 1.7197 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095409939.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:28 Heat of formation + Delta-G solvation = 60.979274 kcal Electronic energy + Delta-G solvation = -32054.391281 eV Core-core repulsion = 27958.188760 eV Total energy + Delta-G solvation = -4096.202520 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.76296 -40.57983 -37.93741 -36.43085 -35.79572 -34.03436 -33.12744 -32.08391 -30.95111 -29.89435 -29.21042 -28.72018 -25.11012 -24.01766 -23.19808 -22.29250 -22.10636 -21.83973 -21.41656 -20.87918 -19.74608 -19.08582 -18.15141 -17.32576 -16.76459 -16.33310 -16.11032 -15.44602 -15.28521 -14.92967 -14.69803 -14.24767 -13.95278 -13.75611 -13.57093 -13.42554 -13.32106 -13.07088 -12.98394 -12.94597 -12.70841 -12.52697 -12.31979 -12.14028 -11.76045 -11.49772 -11.33244 -11.12251 -10.90052 -10.85465 -10.77067 -10.31872 -10.28188 -10.14694 -10.07955 -10.03394 -9.77940 -9.67178 -9.45320 -8.71643 -8.65725 -8.45591 -8.30627 -6.54667 -5.76186 -3.30269 1.51785 2.36758 2.56879 2.82882 3.25353 3.37431 3.44730 3.46535 3.79419 4.04955 4.24019 4.48791 4.57763 4.69591 4.87217 4.91058 4.95381 5.01414 5.18034 5.24987 5.32988 5.35266 5.42596 5.50479 5.53328 5.62587 5.70892 5.71409 5.73979 5.83335 5.87104 5.89585 6.09734 6.14059 6.27559 6.28308 6.38099 6.43910 6.51947 6.61248 6.69932 6.78268 6.81739 6.90627 6.96632 6.99915 7.09938 7.50020 7.79674 7.87376 8.04068 8.55095 8.73927 9.26328 9.85124 10.44754 11.29341 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.002818 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.678602 B = 9934.100920 C =10610.161199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.225 3.775 3 H 0.112 0.888 4 C -0.021 4.021 5 C -0.203 4.203 6 C -0.214 4.214 7 C -0.042 4.042 8 O -0.160 6.160 9 N -0.601 5.601 10 C 0.708 3.292 11 O -0.572 6.572 12 N -0.740 5.740 13 C 0.167 3.833 14 C -0.147 4.147 15 C 0.170 3.830 16 N -0.594 5.594 17 C -0.255 4.255 18 H 0.064 0.936 19 C 0.009 3.991 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.290 1.290 25 C 0.149 3.851 26 C -0.138 4.138 27 C 0.092 3.908 28 C -0.192 4.192 29 C -0.180 4.180 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.201 0.799 36 H 0.386 0.614 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.102 0.898 41 H 0.017 0.983 42 H 0.254 0.746 43 H 0.020 0.980 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.124 0.876 48 H 0.139 0.861 49 H 0.084 0.916 50 H 0.089 0.911 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.649 -9.991 -11.385 24.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.120 3.880 3 H 0.130 0.870 4 C -0.073 4.073 5 C -0.223 4.223 6 C -0.233 4.233 7 C -0.110 4.110 8 O -0.055 6.055 9 N -0.336 5.336 10 C 0.411 3.589 11 O -0.450 6.450 12 N -0.395 5.395 13 C 0.063 3.937 14 C -0.187 4.187 15 C 0.043 3.957 16 N -0.317 5.317 17 C -0.385 4.385 18 H 0.082 0.918 19 C -0.190 4.190 20 N -0.546 5.546 21 Si 0.732 3.268 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.217 1.217 25 C 0.022 3.978 26 C -0.178 4.178 27 C -0.012 4.012 28 C -0.229 4.229 29 C -0.219 4.219 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.217 0.783 36 H 0.222 0.778 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.120 0.880 41 H 0.035 0.965 42 H 0.065 0.935 43 H 0.038 0.962 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.141 0.859 48 H 0.157 0.843 49 H 0.102 0.898 50 H 0.107 0.893 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.163 -10.654 -10.406 24.270 hybrid contribution 0.644 0.876 -1.026 1.495 sum -18.519 -9.779 -11.432 23.859 Atomic orbital electron populations 1.22220 0.92893 1.03557 1.03327 1.19536 0.94960 0.94394 0.79066 0.87017 1.22704 1.05398 0.81246 0.97924 1.21593 1.05940 1.00752 0.93972 1.21812 1.07309 0.92201 1.01947 1.24064 1.02768 1.00409 0.83756 1.84058 1.64532 1.24161 1.32711 1.46624 1.48823 1.14592 1.23551 1.15952 0.78890 0.81980 0.82126 1.90776 1.56247 1.64982 1.32950 1.45828 1.44358 1.09570 1.39773 1.20960 0.86525 0.91909 0.94276 1.22619 0.95550 0.99849 1.00712 1.20956 0.96847 0.82466 0.95386 1.44054 1.09138 1.02298 1.76250 1.19185 0.87374 0.96862 1.35073 0.91804 1.25338 0.98246 0.96829 0.98548 1.69909 1.15535 1.20703 1.48464 0.86221 0.81445 0.81810 0.77328 1.20242 1.21481 1.21694 1.20853 0.85629 0.97305 0.94007 1.22339 0.99527 0.94148 1.01821 1.21305 0.98765 0.80616 1.00544 1.23891 1.02491 1.03516 0.92994 1.23180 0.97898 0.97654 1.03160 0.90722 0.91453 0.90773 0.83405 0.83509 0.78280 0.77835 0.89926 0.93052 0.93129 0.88017 0.96479 0.93521 0.96172 0.92380 0.92703 0.92078 0.85867 0.84344 0.89762 0.89291 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.10 37.15 0.34 -0.81 16 2 C 0.23 2.16 3.09 -69.08 -0.21 1.95 16 3 H 0.11 0.96 5.49 -51.93 -0.28 0.67 16 4 C -0.02 -0.22 6.09 -35.62 -0.22 -0.44 16 5 C -0.20 -2.06 10.80 -39.70 -0.43 -2.49 16 6 C -0.21 -2.03 10.91 -39.70 -0.43 -2.46 16 7 C -0.04 -0.38 12.09 29.42 0.36 -0.03 16 8 O -0.16 -1.76 9.52 5.73 0.05 -1.71 16 9 N -0.60 -7.43 2.72 -165.56 -0.45 -7.88 16 10 C 0.71 11.11 8.03 -86.91 -0.70 10.41 16 11 O -0.57 -10.92 11.71 5.30 0.06 -10.86 16 12 N -0.74 -10.81 4.96 -58.62 -0.29 -11.11 16 13 C 0.17 2.96 2.45 -67.87 -0.17 2.79 16 14 C -0.15 -3.03 5.66 -26.60 -0.15 -3.18 16 15 C 0.17 4.21 5.26 -3.71 -0.02 4.19 16 16 N -0.59 -14.92 3.00 -172.32 -0.52 -15.44 16 17 C -0.26 -6.97 9.55 -15.06 -0.14 -7.11 16 18 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 19 C 0.01 0.25 5.32 -17.43 -0.09 0.16 16 20 N -0.90 -26.28 10.61 55.49 0.59 -25.69 16 21 Si 0.90 21.61 29.56 -169.99 -5.02 16.58 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.15 3.08 6.52 -3.71 -0.02 3.05 16 26 C -0.14 -2.31 5.55 -26.61 -0.15 -2.46 16 27 C 0.09 1.08 4.99 -67.94 -0.34 0.74 16 28 C -0.19 -2.45 9.63 -26.70 -0.26 -2.70 16 29 C -0.18 -2.32 9.87 -26.69 -0.26 -2.58 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.48 6.70 -51.92 -0.35 0.13 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.20 1.12 8.06 -52.48 -0.42 0.69 16 36 H 0.39 4.54 6.05 -40.82 -0.25 4.29 16 37 H 0.08 1.66 7.51 -51.93 -0.39 1.27 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.10 2.84 5.90 -51.93 -0.31 2.53 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.12 1.19 6.72 -51.93 -0.35 0.84 16 48 H 0.14 2.23 5.24 -52.06 -0.27 1.96 16 49 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 50 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 51 H 0.10 1.54 7.57 -51.93 -0.39 1.15 16 LS Contribution 399.15 15.07 6.02 6.02 Total: -1.00 -32.47 399.15 -10.51 -42.98 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -8.05 Total: 8.06 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -2.90 Total: -0.96 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.67 Total: -60.12 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.12 Total: -12.57 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.47 -10.51 -42.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095409939.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.961 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds