Wall clock time and date at job start Tue Mar 31 2020 05:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47392 * 2 1 4 4 C 1.50704 * 109.47262 * 239.99897 * 2 1 3 5 5 C 1.34515 * 125.78803 * 99.71479 * 4 2 1 6 6 C 1.41382 * 106.84208 * 179.89257 * 5 4 2 7 7 C 1.34519 * 106.83734 * 0.37252 * 6 5 4 8 8 O 1.34297 * 108.42039 * 359.77136 * 7 6 5 9 9 N 1.46509 * 109.47155 * 120.00362 * 2 1 3 10 10 C 1.34782 * 119.99692 * 235.06976 * 9 2 1 11 11 O 1.21580 * 119.99873 * 186.11179 * 10 9 2 12 12 N 1.34775 * 119.99640 * 6.10518 * 10 9 2 13 13 C 1.46508 * 119.99597 * 185.18386 * 12 10 9 14 14 C 1.53069 * 109.45170 * 84.79146 * 13 12 10 15 15 C 1.53188 * 109.29518 * 181.24365 * 14 13 12 16 16 N 1.46926 * 108.89436 * 305.58245 * 15 14 13 17 17 C 1.36945 * 120.63117 * 233.51804 * 16 15 14 18 18 H 1.07994 * 120.00175 * 144.68921 * 17 16 15 19 19 C 1.38809 * 119.99470 * 324.69137 * 17 16 15 20 20 N 1.31624 * 120.00509 * 4.32775 * 19 17 16 21 21 Si 1.86807 * 119.99882 * 184.33161 * 19 17 16 22 22 H 1.48495 * 109.46749 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47233 * 119.99678 * 21 19 17 24 24 H 1.48498 * 109.47199 * 239.99642 * 21 19 17 25 25 C 1.46921 * 118.74297 * 53.53319 * 16 15 14 26 26 C 1.53038 * 109.46020 * 205.00524 * 13 12 10 27 27 C 1.46493 * 120.00280 * 55.06798 * 9 2 1 28 28 C 1.52995 * 117.50235 * 196.62473 * 27 9 2 29 29 C 1.53002 * 117.49968 * 127.96568 * 27 9 2 30 30 H 1.08994 * 109.47659 * 60.00247 * 1 2 3 31 31 H 1.09008 * 109.47368 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47262 * 299.99542 * 1 2 3 33 33 H 1.07996 * 126.57731 * 0.02883 * 5 4 2 34 34 H 1.08000 * 126.58169 * 180.16875 * 6 5 4 35 35 H 1.08007 * 125.78591 * 179.75450 * 7 6 5 36 36 H 0.96993 * 120.00868 * 5.19439 * 12 10 9 37 37 H 1.09005 * 109.45680 * 324.97722 * 13 12 10 38 38 H 1.08995 * 109.39181 * 61.36727 * 14 13 12 39 39 H 1.09002 * 109.62161 * 301.26087 * 14 13 12 40 40 H 1.09003 * 109.59284 * 185.72164 * 15 14 13 41 41 H 1.09001 * 109.59044 * 65.43882 * 15 14 13 42 42 H 0.97001 * 120.00038 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.58411 * 66.18074 * 25 16 15 44 44 H 1.09003 * 109.59070 * 186.46706 * 25 16 15 45 45 H 1.09000 * 109.49860 * 58.65872 * 26 13 12 46 46 H 1.08996 * 109.49582 * 298.56804 * 26 13 12 47 47 H 1.09001 * 115.54772 * 342.30094 * 27 9 2 48 48 H 1.09003 * 117.49808 * 0.02562 * 28 27 9 49 49 H 1.08996 * 117.50018 * 145.01760 * 28 27 9 50 50 H 1.09005 * 117.49815 * 214.97818 * 29 27 9 51 51 H 1.08997 * 117.49513 * 359.97438 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.4681 -0.1192 -2.3574 6 6 2.8432 -1.1542 -3.2444 7 6 2.6064 -2.3163 -2.6095 8 8 2.1153 -2.0413 -1.3902 9 7 2.0183 -0.6907 1.1962 10 6 2.8730 -0.0682 2.0320 11 8 3.3649 -0.6768 2.9625 12 7 3.1826 1.2288 1.8360 13 6 4.1965 1.8744 2.6736 14 6 5.5863 1.6019 2.0930 15 6 6.6454 2.2523 2.9885 16 7 6.3238 3.6770 3.1481 17 6 7.2570 4.6388 2.8662 18 1 6.9496 5.5789 2.4327 19 6 8.5981 4.4052 3.1378 20 7 8.9838 3.2293 3.5862 21 14 9.8556 5.7598 2.8669 22 1 9.1711 6.9766 2.3611 23 1 10.5333 6.0702 4.1513 24 1 10.8622 5.3091 1.8725 25 6 4.9821 4.0503 3.6161 26 6 3.9411 3.3829 2.7118 27 6 1.5776 -2.0578 1.4839 28 6 1.7913 -2.5849 2.9042 29 6 2.6585 -3.1061 1.7555 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.5232 0.9426 -2.5472 34 1 3.2403 -1.0349 -4.2416 35 1 2.7813 -3.3031 -3.0123 36 1 2.7341 1.7348 1.1407 37 1 4.1424 1.4713 3.6850 38 1 5.6487 2.0243 1.0901 39 1 5.7593 0.5267 2.0468 40 1 7.6276 2.1489 2.5272 41 1 6.6472 1.7666 3.9643 42 1 9.9210 3.0660 3.7756 43 1 4.8457 3.7107 4.6428 44 1 4.8675 5.1334 3.5712 45 1 2.9423 3.5730 3.1048 46 1 4.0196 3.7907 1.7040 47 1 0.6817 -2.3840 0.9555 48 1 2.2595 -1.9143 3.6247 49 1 1.0363 -3.2580 3.3102 50 1 2.4734 -4.1220 1.4063 51 1 3.6974 -2.7786 1.7197 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095409939.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:27 Heat of formation + Delta-G solvation = 42.317209 kcal Electronic energy + Delta-G solvation = -32055.200529 eV Core-core repulsion = 27958.188760 eV Total energy + Delta-G solvation = -4097.011768 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.49242 -41.73894 -39.44197 -37.71998 -36.84901 -35.55795 -33.92824 -33.70824 -32.12093 -31.59129 -30.80003 -29.38899 -26.97412 -24.76545 -24.52984 -23.87761 -23.25215 -22.99385 -22.52940 -21.77142 -21.11198 -20.47965 -19.14444 -18.76494 -18.07966 -17.39575 -16.97886 -16.82565 -16.54287 -16.39892 -15.83810 -15.56314 -15.30313 -15.25181 -14.85579 -14.74873 -14.55411 -14.23550 -14.11600 -13.98127 -13.75754 -13.67928 -13.38416 -13.24760 -12.87062 -12.81940 -12.78070 -12.62738 -12.44084 -12.31440 -12.06583 -12.04310 -11.91575 -11.86902 -11.55329 -11.35313 -11.25232 -10.82611 -10.76229 -10.56268 -10.03302 -9.43526 -9.37742 -8.58681 -7.85560 -5.43377 0.78067 1.44118 1.47417 1.48795 1.59210 1.75248 1.97747 2.17439 2.50244 2.72481 3.08113 3.30520 3.49894 3.69115 3.84173 3.92509 3.97328 4.03647 4.09395 4.11184 4.18562 4.21291 4.31773 4.35181 4.49015 4.50781 4.68812 4.75379 4.80919 4.82488 4.84223 4.88004 4.95985 5.01331 5.04354 5.07663 5.10341 5.15651 5.18276 5.27083 5.33746 5.39154 5.50594 5.58393 5.61302 5.64906 5.75901 5.78392 5.85595 6.24159 6.45926 6.91472 7.16999 7.54309 7.84105 8.39461 9.18586 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.002818 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.678602 B = 9934.100920 C =10610.161199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.221 3.779 3 H 0.122 0.878 4 C -0.038 4.038 5 C -0.212 4.212 6 C -0.230 4.230 7 C -0.045 4.045 8 O -0.175 6.175 9 N -0.594 5.594 10 C 0.701 3.299 11 O -0.612 6.612 12 N -0.727 5.727 13 C 0.181 3.819 14 C -0.129 4.129 15 C 0.180 3.820 16 N -0.612 5.612 17 C -0.263 4.263 18 H 0.073 0.927 19 C -0.049 4.049 20 N -0.938 5.938 21 Si 0.971 3.029 22 H -0.261 1.261 23 H -0.293 1.293 24 H -0.293 1.293 25 C 0.143 3.857 26 C -0.121 4.121 27 C 0.103 3.897 28 C -0.196 4.196 29 C -0.186 4.186 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.230 0.770 36 H 0.404 0.596 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.035 0.965 40 H 0.066 0.934 41 H -0.015 1.015 42 H 0.249 0.751 43 H 0.013 0.987 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.073 0.927 47 H 0.154 0.846 48 H 0.104 0.896 49 H 0.111 0.889 50 H 0.113 0.887 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.411 -9.120 -13.449 27.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.118 3.882 3 H 0.139 0.861 4 C -0.090 4.090 5 C -0.232 4.232 6 C -0.249 4.249 7 C -0.112 4.112 8 O -0.070 6.070 9 N -0.329 5.329 10 C 0.404 3.596 11 O -0.492 6.492 12 N -0.384 5.384 13 C 0.076 3.924 14 C -0.170 4.170 15 C 0.054 3.946 16 N -0.335 5.335 17 C -0.393 4.393 18 H 0.091 0.909 19 C -0.244 4.244 20 N -0.583 5.583 21 Si 0.798 3.202 22 H -0.185 1.185 23 H -0.219 1.219 24 H -0.220 1.220 25 C 0.017 3.983 26 C -0.160 4.160 27 C -0.001 4.001 28 C -0.233 4.233 29 C -0.225 4.225 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.178 0.822 34 H 0.180 0.820 35 H 0.246 0.754 36 H 0.243 0.757 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.003 0.997 42 H 0.059 0.941 43 H 0.031 0.969 44 H 0.088 0.912 45 H 0.111 0.889 46 H 0.092 0.908 47 H 0.171 0.829 48 H 0.122 0.878 49 H 0.129 0.871 50 H 0.131 0.869 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.997 -9.760 -12.522 27.128 hybrid contribution 1.497 0.544 -0.412 1.645 sum -20.500 -9.216 -12.933 25.932 Atomic orbital electron populations 1.22193 0.90532 1.04043 1.04490 1.19843 0.96730 0.94295 0.77348 0.86084 1.22870 1.06317 0.81367 0.98425 1.21899 1.05534 1.01676 0.94092 1.22141 1.07684 0.92287 1.02809 1.24733 1.01652 1.01795 0.83053 1.84041 1.64954 1.24410 1.33604 1.46659 1.47723 1.14791 1.23681 1.16167 0.79201 0.82079 0.82181 1.90789 1.57757 1.65839 1.34828 1.45424 1.43621 1.09506 1.39856 1.20533 0.85584 0.93087 0.93187 1.22340 0.96431 0.98294 0.99905 1.20589 0.96657 0.83232 0.94141 1.44281 1.10689 1.01744 1.76830 1.19578 0.88030 0.97295 1.34409 0.90899 1.26137 1.00417 0.98809 0.99034 1.70125 1.15429 1.22627 1.50161 0.85155 0.78770 0.79524 0.76719 1.18455 1.21947 1.21957 1.21049 0.84310 0.98484 0.94447 1.22141 0.99932 0.92211 1.01752 1.21562 0.98907 0.79916 0.99736 1.23759 1.03031 1.03728 0.92818 1.23101 0.96079 0.99267 1.04085 0.88905 0.91322 0.90202 0.82160 0.81983 0.75386 0.75685 0.92449 0.92644 0.94629 0.91576 0.99711 0.94148 0.96933 0.91173 0.88927 0.90795 0.82874 0.87776 0.87103 0.86920 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.10 71.98 0.65 -1.02 16 2 C 0.22 3.70 3.09 44.24 0.14 3.84 16 3 H 0.12 1.72 5.49 -2.39 -0.01 1.71 16 4 C -0.04 -0.74 6.09 24.83 0.15 -0.59 16 5 C -0.21 -3.89 10.80 22.19 0.24 -3.65 16 6 C -0.23 -3.93 10.91 22.19 0.24 -3.69 16 7 C -0.04 -0.73 12.09 66.97 0.81 0.08 16 8 O -0.17 -3.52 9.52 -2.40 -0.02 -3.54 16 9 N -0.59 -13.92 2.72 -795.96 -2.16 -16.08 16 10 C 0.70 21.83 8.03 179.05 1.44 23.27 16 11 O -0.61 -24.27 11.71 -3.97 -0.05 -24.32 16 12 N -0.73 -20.32 4.96 -457.63 -2.27 -22.59 16 13 C 0.18 6.37 2.45 45.03 0.11 6.48 16 14 C -0.13 -5.47 5.66 30.68 0.17 -5.30 16 15 C 0.18 9.39 5.26 86.36 0.45 9.85 16 16 N -0.61 -31.13 3.00 -699.10 -2.10 -33.23 16 17 C -0.26 -14.41 9.55 84.03 0.80 -13.61 16 18 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 19 C -0.05 -2.76 5.32 84.86 0.45 -2.31 16 20 N -0.94 -56.83 10.61 21.65 0.23 -56.60 16 21 Si 0.97 44.94 29.56 68.60 2.03 46.97 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 25 C 0.14 5.76 6.52 86.36 0.56 6.33 16 26 C -0.12 -3.75 5.55 30.67 0.17 -3.58 16 27 C 0.10 2.26 4.99 44.99 0.22 2.49 16 28 C -0.20 -4.93 9.63 30.62 0.29 -4.63 16 29 C -0.19 -4.76 9.87 30.62 0.30 -4.46 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.74 6.70 -2.38 -0.02 0.73 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 34 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 35 H 0.23 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.40 8.39 6.05 -92.71 -0.56 7.83 16 37 H 0.06 2.35 7.51 -2.38 -0.02 2.34 16 38 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.03 1.58 8.14 -2.39 -0.02 1.57 16 40 H 0.07 3.91 5.90 -2.39 -0.01 3.90 16 41 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 42 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 43 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.07 2.64 7.93 -2.39 -0.02 2.62 16 45 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 47 H 0.15 2.48 6.72 -2.39 -0.02 2.46 16 48 H 0.10 3.48 5.24 -4.55 -0.02 3.46 16 49 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 51 H 0.06 1.95 7.57 -2.39 -0.02 1.93 16 Total: -1.00 -74.75 399.15 3.24 -71.51 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.36 Total: 28.38 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 7.22 Total: 9.51 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -6.30 Total: -128.51 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.07 Total: -27.86 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -74.75 3.24 -71.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095409939.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.831 kcal (2) G-P(sol) polarization free energy of solvation -74.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds