Wall clock time and date at job start Tue Mar 31 2020 05:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99999 * 2 1 4 4 H 1.48500 * 109.47201 * 270.00212 * 3 2 1 5 5 H 1.48501 * 109.47346 * 30.00300 * 3 2 1 6 6 H 1.48498 * 109.47193 * 150.00524 * 3 2 1 7 7 C 1.37880 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99514 * 359.97438 * 7 2 1 9 9 S 1.76195 * 120.00201 * 179.97438 * 7 2 1 10 10 O 1.42101 * 106.40436 * 66.45695 * 9 7 2 11 11 O 1.42103 * 106.40190 * 293.53970 * 9 7 2 12 12 N 1.65600 * 107.21973 * 180.02562 * 9 7 2 13 13 C 1.46495 * 120.00035 * 64.99809 * 12 9 7 14 14 C 1.50706 * 109.46963 * 165.00157 * 13 12 9 15 15 C 1.38097 * 120.03833 * 259.99936 * 14 13 12 16 16 C 1.38286 * 120.07819 * 179.97438 * 15 14 13 17 17 C 1.38327 * 120.15840 * 0.02562 * 16 15 14 18 18 C 1.38062 * 120.08073 * 359.97438 * 17 16 15 19 19 C 1.38950 * 120.03805 * 79.72571 * 14 13 12 20 20 S 1.76204 * 120.07938 * 0.02562 * 19 14 13 21 21 C 1.76195 * 102.99736 * 76.62724 * 20 19 14 22 22 C 1.38973 * 120.08149 * 5.75925 * 21 20 19 23 23 C 1.38082 * 119.92244 * 179.72526 * 22 21 20 24 24 C 1.38305 * 120.07650 * 0.52542 * 23 22 21 25 25 C 1.38312 * 120.16110 * 359.77388 * 24 23 22 26 26 C 1.38077 * 120.07487 * 359.95373 * 25 24 23 27 27 H 0.96998 * 120.00456 * 359.97438 * 1 2 3 28 28 H 0.97008 * 119.99719 * 244.99870 * 12 9 7 29 29 H 1.08994 * 109.47081 * 285.00107 * 13 12 9 30 30 H 1.08994 * 109.47196 * 45.00266 * 13 12 9 31 31 H 1.07994 * 119.96303 * 359.95777 * 15 14 13 32 32 H 1.07994 * 119.92551 * 179.97438 * 16 15 14 33 33 H 1.07995 * 119.96302 * 179.97438 * 17 16 15 34 34 H 1.08000 * 120.04426 * 180.02562 * 18 17 16 35 35 H 1.07999 * 120.03855 * 359.97438 * 22 21 20 36 36 H 1.07996 * 119.96558 * 180.28160 * 23 22 21 37 37 H 1.07995 * 119.92379 * 179.74375 * 24 23 22 38 38 H 1.08000 * 119.95897 * 179.97438 * 25 24 23 39 39 H 1.08005 * 120.03530 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7665 -1.1941 -0.0012 10 8 4.1683 -0.6499 1.2484 11 8 4.1673 -0.6494 -1.2510 12 7 4.2567 -2.7759 -0.0025 13 6 3.9609 -3.6335 -1.1527 14 6 4.8069 -4.8787 -1.0816 15 6 5.9539 -4.9796 -1.8440 16 6 6.7310 -6.1216 -1.7790 17 6 6.3626 -7.1667 -0.9511 18 6 5.2172 -7.0728 -0.1860 19 6 4.4368 -5.9241 -0.2446 20 16 2.9776 -5.7970 0.7349 21 6 1.6900 -6.0837 -0.4331 22 6 2.0013 -6.4488 -1.7374 23 6 0.9895 -6.6782 -2.6486 24 6 -0.3322 -6.5344 -2.2675 25 6 -0.6457 -6.1651 -0.9720 26 6 0.3608 -5.9396 -0.0540 27 1 -0.4851 0.8400 0.0004 28 1 4.7397 -3.1345 0.7585 29 1 2.9065 -3.9093 -1.1387 30 1 4.1834 -3.0952 -2.0740 31 1 6.2442 -4.1659 -2.4920 32 1 7.6273 -6.1981 -2.3766 33 1 6.9717 -8.0572 -0.9031 34 1 4.9304 -7.8889 0.4605 35 1 3.0333 -6.5570 -2.0369 36 1 1.2305 -6.9664 -3.6611 37 1 -1.1215 -6.7103 -2.9833 38 1 -1.6789 -6.0533 -0.6780 39 1 0.1153 -5.6516 0.9576 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439675.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:13 Heat of formation + Delta-G solvation = -23.629322 kcal Electronic energy + Delta-G solvation = -25884.888721 eV Core-core repulsion = 22203.419525 eV Total energy + Delta-G solvation = -3681.469195 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 349.059 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.52116 -38.72424 -35.63533 -34.91448 -34.39092 -32.97334 -31.48472 -30.99214 -30.83167 -30.46060 -26.36958 -25.46102 -23.31983 -22.57547 -22.27789 -21.46389 -19.09578 -18.04475 -17.47439 -17.22037 -16.61058 -16.11785 -15.63451 -15.53960 -15.06031 -14.95296 -14.73302 -14.22674 -13.83696 -13.67876 -13.48929 -13.32991 -13.26320 -12.97431 -12.86306 -12.57056 -12.50558 -12.06458 -11.68623 -11.35163 -11.20330 -11.10317 -11.04260 -10.73316 -10.58814 -10.46625 -10.38237 -9.85495 -9.70165 -9.20239 -9.16399 -9.05218 -8.93481 -8.87305 -8.51925 -7.23446 -6.74785 -5.27264 0.72879 1.14952 1.31511 1.48123 1.71413 2.16171 2.56001 3.10164 3.20705 3.30264 3.53870 3.82284 3.99367 4.45812 4.59937 4.66858 4.74287 4.81932 4.94179 5.02447 5.15303 5.18424 5.24643 5.37899 5.47667 5.48442 5.61009 5.71524 5.78813 5.83177 6.01503 6.06904 6.10130 6.14816 6.24933 6.37319 6.42652 6.46985 6.58011 6.59193 6.70671 6.99588 7.53236 7.76140 8.30240 8.76710 10.37518 Molecular weight = 349.06amu Principal moments of inertia in cm(-1) A = 0.010251 B = 0.004978 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.685983 B = 5623.438532 C = 7436.474566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.155 3.845 3 Si 0.799 3.201 4 H -0.247 1.247 5 H -0.255 1.255 6 H -0.221 1.221 7 C -1.010 5.010 8 H 0.124 0.876 9 S 2.675 3.325 10 O -1.007 7.007 11 O -1.014 7.014 12 N -1.112 6.112 13 C 0.160 3.840 14 C -0.041 4.041 15 C -0.112 4.112 16 C -0.093 4.093 17 C -0.130 4.130 18 C -0.068 4.068 19 C -0.129 4.129 20 S 0.002 5.998 21 C -0.094 4.094 22 C -0.125 4.125 23 C -0.105 4.105 24 C -0.125 4.125 25 C -0.100 4.100 26 C -0.093 4.093 27 H 0.279 0.721 28 H 0.407 0.593 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.754 -17.460 -3.974 18.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.065 4.065 3 Si 0.619 3.381 4 H -0.171 1.171 5 H -0.179 1.179 6 H -0.143 1.143 7 C -1.145 5.145 8 H 0.142 0.858 9 S 2.777 3.223 10 O -0.998 6.998 11 O -1.003 7.003 12 N -0.867 5.867 13 C 0.033 3.967 14 C -0.045 4.045 15 C -0.132 4.132 16 C -0.112 4.112 17 C -0.150 4.150 18 C -0.089 4.089 19 C -0.241 4.241 20 S 0.253 5.747 21 C -0.206 4.206 22 C -0.149 4.149 23 C -0.124 4.124 24 C -0.146 4.146 25 C -0.120 4.120 26 C -0.116 4.116 27 H 0.090 0.910 28 H 0.238 0.762 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.152 0.848 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.057 -16.295 -2.858 17.618 hybrid contribution -0.124 0.061 -1.110 1.119 sum 5.933 -16.234 -3.968 17.734 Atomic orbital electron populations 1.69989 1.06519 1.28854 1.39809 1.24399 0.94744 0.98634 0.88689 0.87908 0.83648 0.84789 0.81746 1.17091 1.17944 1.14283 1.30419 1.15435 1.02223 1.66410 0.85822 1.01351 0.77471 0.70255 0.73259 1.93476 1.85569 1.75739 1.44969 1.93396 1.85165 1.76089 1.45693 1.55392 1.74356 1.30747 1.26213 1.20135 0.98327 0.88102 0.90122 1.20397 0.95219 0.94571 0.94295 1.21238 0.93993 0.98441 0.99575 1.21348 0.99039 0.93163 0.97603 1.21189 0.97083 0.99297 0.97387 1.21487 0.94167 0.95919 0.97328 1.21819 1.01096 0.97373 1.03850 1.84274 0.91882 1.88484 1.10102 1.21990 0.97305 1.03735 0.97538 1.21169 0.99671 1.01615 0.92459 1.21008 0.92751 0.99665 0.99004 1.21151 0.96379 1.00725 0.96352 1.21078 0.99077 0.98460 0.93348 1.20774 0.90514 0.99928 1.00411 0.91034 0.76179 0.90458 0.89583 0.84829 0.85458 0.85483 0.84984 0.86083 0.86044 0.86043 0.85560 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.84 13.96 55.43 0.77 -23.07 16 2 C 0.15 4.48 5.47 -17.82 -0.10 4.38 16 3 Si 0.80 20.82 26.54 -169.99 -4.51 16.31 16 4 H -0.25 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.22 -5.88 5.61 56.52 0.32 -5.56 16 7 C -1.01 -28.38 10.26 30.60 0.31 -28.07 16 8 H 0.12 3.52 8.06 -52.48 -0.42 3.10 16 9 S 2.67 67.73 4.24 -107.50 -0.46 67.28 16 10 O -1.01 -27.53 16.02 -57.17 -0.92 -28.44 16 11 O -1.01 -27.18 16.30 -57.17 -0.93 -28.11 16 12 N -1.11 -22.01 5.99 -11.66 -0.07 -22.08 16 13 C 0.16 2.81 5.70 -5.19 -0.03 2.78 16 14 C -0.04 -0.58 4.65 -104.41 -0.49 -1.06 16 15 C -0.11 -1.34 9.66 -39.62 -0.38 -1.73 16 16 C -0.09 -0.90 10.04 -39.53 -0.40 -1.29 16 17 C -0.13 -1.20 10.04 -39.61 -0.40 -1.59 16 18 C -0.07 -0.74 9.79 -39.37 -0.39 -1.13 16 19 C -0.13 -1.74 3.95 -39.04 -0.15 -1.89 16 20 S 0.00 0.02 20.56 -107.50 -2.21 -2.19 16 21 C -0.09 -1.41 5.16 -39.04 -0.20 -1.61 16 22 C -0.13 -1.74 8.89 -39.37 -0.35 -2.09 16 23 C -0.10 -1.30 10.04 -39.61 -0.40 -1.70 16 24 C -0.13 -1.54 10.04 -39.53 -0.40 -1.93 16 25 C -0.10 -1.32 10.04 -39.61 -0.40 -1.71 16 26 C -0.09 -1.37 9.79 -39.37 -0.39 -1.76 16 27 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.41 7.23 8.65 -34.47 -0.30 6.93 16 29 H 0.08 1.43 6.02 -51.93 -0.31 1.12 16 30 H 0.09 1.50 7.61 -51.93 -0.40 1.10 16 31 H 0.13 1.48 8.04 -52.49 -0.42 1.05 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.12 1.59 6.02 -52.49 -0.32 1.28 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.13 1.82 8.06 -52.48 -0.42 1.39 16 LS Contribution 356.06 15.07 5.37 5.37 Total: -1.00 -33.84 356.06 -11.45 -45.29 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -4.35 Total: 10.05 kcal Atomic # 6 Polarization: -36.26 SS G_CDS: -4.15 Total: -40.41 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.70 Total: -45.15 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -1.85 Total: -56.55 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.51 Total: 16.31 kcal Atomic # 16 Polarization: 67.76 SS G_CDS: -2.67 Total: 65.09 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.84 -11.45 -45.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439675.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.660 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds