Wall clock time and date at job start Tue Mar 31 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40396 * 107.86945 * 179.88542 * 3 2 1 5 5 N 1.40196 * 125.97439 * 180.17767 * 4 3 2 6 6 C 1.34772 * 120.00000 * 0.27024 * 5 4 3 7 7 O 1.21595 * 120.00020 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00158 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00026 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47077 * 180.02562 * 9 8 6 11 11 S 1.76197 * 126.03706 * 269.69531 * 10 9 8 12 12 C 1.70977 * 90.28033 * 179.97438 * 11 10 9 13 13 C 1.50705 * 124.91669 * 180.02562 * 12 11 10 14 14 N 1.29026 * 110.16934 * 0.34581 * 12 11 10 15 15 C 1.31784 * 117.12471 * 359.72350 * 14 12 11 16 16 C 1.50694 * 122.75146 * 180.02562 * 15 14 12 17 17 N 1.31217 * 108.05370 * 0.38247 * 4 3 2 18 18 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 19 19 C 1.46496 * 125.97396 * 359.97438 * 18 2 1 20 20 C 1.50702 * 109.47079 * 90.00325 * 19 18 2 21 21 H 1.08002 * 120.00024 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00327 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99450 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00465 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46776 * 59.99591 * 24 22 20 26 26 H 1.48491 * 109.47249 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46668 * 299.99903 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 31 31 H 1.08001 * 126.06108 * 0.02728 * 3 2 1 32 32 H 0.97004 * 120.00062 * 180.27001 * 5 4 3 33 33 H 0.97004 * 119.99904 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.47274 * 299.99650 * 9 8 6 35 35 H 1.08998 * 109.47280 * 60.00233 * 9 8 6 36 36 H 1.08999 * 109.46820 * 270.28937 * 13 12 11 37 37 H 1.08996 * 109.47034 * 30.28670 * 13 12 11 38 38 H 1.09004 * 109.47246 * 150.28963 * 13 12 11 39 39 H 1.08996 * 109.47524 * 270.00078 * 16 15 14 40 40 H 1.09009 * 109.47053 * 30.00735 * 16 15 14 41 41 H 1.09002 * 109.47291 * 149.99626 * 16 15 14 42 42 H 1.08997 * 109.47352 * 209.99655 * 19 18 2 43 43 H 1.09001 * 109.47699 * 330.00018 * 19 18 2 44 44 H 0.97001 * 120.00075 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6546 0.0027 5 7 4.7738 1.4751 0.0071 6 6 4.6371 2.8159 0.0146 7 8 3.5278 3.3139 0.0171 8 7 5.7298 3.6047 0.0183 9 6 5.5811 5.0621 0.0259 10 6 6.9437 5.7061 0.0281 11 16 7.8788 6.1485 1.4544 12 6 9.1350 6.7410 0.4574 13 6 10.4204 7.3476 0.9582 14 7 8.8203 6.5997 -0.7859 15 6 7.6531 6.0486 -1.0514 16 6 7.1590 5.8227 -2.4570 17 7 3.6337 -0.6576 -0.0041 18 7 2.3017 -1.0909 -0.0060 19 6 1.8501 -2.4845 -0.0130 20 6 1.6948 -2.9550 -1.4363 21 1 1.9105 -2.2830 -2.2538 22 6 1.2773 -4.2434 -1.6948 23 7 1.0151 -5.0619 -0.6994 24 14 1.0841 -4.8264 -3.4590 25 1 2.3895 -4.7248 -4.1596 26 1 0.6276 -6.2394 -3.4661 27 1 0.0822 -3.9785 -4.1535 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9720 2.1211 0.0004 32 1 5.6588 1.0779 0.0047 33 1 6.6148 3.2074 0.0159 34 1 5.0328 5.3761 -0.8623 35 1 5.0334 5.3668 0.9177 36 1 10.2902 8.4225 1.0836 37 1 10.6847 6.8995 1.9160 38 1 11.2161 7.1597 0.2372 39 1 6.6002 6.6970 -2.7907 40 1 8.0094 5.6604 -3.1194 41 1 6.5102 4.9471 -2.4778 42 1 2.5849 -3.1072 0.4972 43 1 0.8916 -2.5586 0.5008 44 1 0.7218 -5.9684 -0.8812 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095454838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:44 Heat of formation + Delta-G solvation = 89.506021 kcal Electronic energy + Delta-G solvation = -26826.236365 eV Core-core repulsion = 22907.338812 eV Total energy + Delta-G solvation = -3918.897553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.131 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.81395 -40.42743 -39.55287 -35.74139 -34.71457 -33.47495 -33.12364 -31.41850 -30.82368 -29.82864 -29.17621 -26.63672 -26.30840 -25.02009 -23.20611 -22.98370 -21.59358 -20.12904 -19.62454 -19.27875 -18.37113 -17.75266 -16.67404 -16.52356 -15.74713 -15.70802 -15.44476 -15.17953 -14.75913 -14.47407 -14.26113 -14.09688 -13.90389 -13.74015 -13.52231 -13.26959 -12.96641 -12.81177 -12.47642 -12.45731 -12.34819 -12.29282 -12.12089 -11.66700 -11.57925 -11.39170 -11.08580 -10.81600 -10.45871 -10.26224 -10.10082 -10.05714 -9.78667 -9.62866 -9.54833 -9.31577 -9.05690 -8.63140 -7.90311 -7.39769 -6.24340 -4.32075 0.14495 0.86048 1.29047 2.17947 2.53330 2.64564 3.08501 3.23989 3.27780 3.31993 3.58971 3.63892 3.83350 4.25183 4.28859 4.36135 4.49396 4.64265 4.86226 4.92995 5.09016 5.15942 5.24744 5.27604 5.31813 5.45061 5.45271 5.54831 5.72795 5.88362 5.95241 6.10936 6.13830 6.22132 6.50684 6.57048 6.64794 6.96439 7.05407 7.12251 7.29839 7.52733 7.68229 7.89815 7.92294 8.08699 8.54889 8.68530 8.77032 9.34154 10.82710 Molecular weight = 349.13amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.001816 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.725641 B =15410.823690 C =15796.407821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.282 3.718 5 N -0.642 5.642 6 C 0.715 3.285 7 O -0.564 6.564 8 N -0.743 5.743 9 C 0.225 3.775 10 C -0.258 4.258 11 S 0.138 5.862 12 C 0.053 3.947 13 C -0.080 4.080 14 N -0.476 5.476 15 C 0.096 3.904 16 C -0.085 4.085 17 N -0.323 5.323 18 N -0.318 5.318 19 C 0.259 3.741 20 C -0.536 4.536 21 H 0.064 0.936 22 C 0.066 3.934 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.275 1.275 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.160 0.840 32 H 0.406 0.594 33 H 0.398 0.602 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.628 24.386 4.192 28.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.028 3.972 5 N -0.292 5.292 6 C 0.414 3.586 7 O -0.439 6.439 8 N -0.400 5.400 9 C 0.098 3.902 10 C -0.379 4.379 11 S 0.395 5.605 12 C -0.225 4.225 13 C -0.140 4.140 14 N -0.191 5.191 15 C -0.038 4.038 16 C -0.145 4.145 17 N -0.154 5.154 18 N -0.100 5.100 19 C 0.141 3.859 20 C -0.575 4.575 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.178 0.822 32 H 0.241 0.759 33 H 0.232 0.768 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.461 23.617 4.969 28.135 hybrid contribution 0.228 -0.294 -1.742 1.782 sum 14.689 23.323 3.226 27.751 Atomic orbital electron populations 1.20374 0.87966 1.03838 1.02494 1.21060 0.94892 0.87136 1.00936 1.21233 0.89676 0.99827 1.21247 1.18649 0.86491 0.89250 1.02799 1.41362 1.07677 1.03635 1.76544 1.15558 0.84515 0.80430 0.78087 1.90887 1.23385 1.73460 1.56215 1.45101 1.07885 1.05742 1.81317 1.19282 0.89265 0.77684 1.03924 1.25642 1.03704 1.13565 0.94968 1.84117 1.10673 1.55064 1.10657 1.27088 1.01665 1.02122 0.91621 1.20490 0.90778 1.00925 1.01808 1.66221 1.17218 1.16935 1.18747 1.20308 0.89137 0.96970 0.97399 1.20470 1.01710 1.02949 0.89349 1.77250 0.99997 1.08313 1.29845 1.48964 1.00863 1.07738 1.52468 1.19670 0.95952 0.71389 0.98863 1.21296 1.46851 0.97953 0.91393 0.91798 1.24928 0.94699 0.96047 0.98108 1.69911 1.44891 1.06970 1.31188 0.86415 0.78803 0.77645 0.83820 1.20015 1.20977 1.19922 0.91121 0.89942 0.90633 0.82227 0.75913 0.76835 0.89104 0.90094 0.89378 0.89898 0.89096 0.90174 0.90318 0.90137 0.93044 0.92803 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.89 36.01 0.36 -1.17 16 2 C 0.09 1.93 6.93 -82.28 -0.57 1.36 16 3 C -0.29 -5.99 9.52 -39.84 -0.38 -6.37 16 4 C 0.28 5.75 8.11 -154.36 -1.25 4.50 16 5 N -0.64 -9.98 5.45 -15.51 -0.08 -10.06 16 6 C 0.71 10.35 8.53 -86.93 -0.74 9.61 16 7 O -0.56 -10.04 13.47 5.28 0.07 -9.97 16 8 N -0.74 -7.46 5.55 -66.41 -0.37 -7.83 16 9 C 0.22 2.04 5.60 -5.19 -0.03 2.01 16 10 C -0.26 -2.15 5.96 -35.92 -0.21 -2.37 16 11 S 0.14 0.99 23.18 -107.50 -2.49 -1.51 16 12 C 0.05 0.40 7.39 -13.45 -0.10 0.30 16 13 C -0.08 -0.34 10.46 36.01 0.38 0.04 16 14 N -0.48 -4.58 10.53 -8.06 -0.08 -4.67 16 15 C 0.10 0.86 6.74 -84.23 -0.57 0.29 16 16 C -0.09 -0.64 9.82 36.00 0.35 -0.28 16 17 N -0.32 -7.49 12.59 31.44 0.40 -7.10 16 18 N -0.32 -7.57 3.59 -58.33 -0.21 -7.78 16 19 C 0.26 6.66 5.81 -5.20 -0.03 6.63 16 20 C -0.54 -14.79 9.39 -34.44 -0.32 -15.12 16 21 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 22 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -25.05 13.29 55.43 0.74 -24.31 16 24 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.16 3.24 5.91 -52.49 -0.31 2.93 16 32 H 0.41 5.07 8.84 -40.82 -0.36 4.71 16 33 H 0.40 3.17 8.48 -40.82 -0.35 2.82 16 34 H 0.09 0.83 7.43 -51.93 -0.39 0.45 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.08 0.59 7.35 -51.93 -0.38 0.21 16 42 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.05 1.37 7.65 -51.93 -0.40 0.97 16 44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 390.87 15.07 5.89 5.89 Total: -1.00 -33.83 390.87 -10.32 -44.15 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.93 Total: 5.93 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -3.22 Total: 1.14 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: 0.38 Total: -61.75 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.49 Total: -1.51 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.83 -10.32 -44.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095454838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.653 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds