Wall clock time and date at job start Tue Mar 31 2020 05:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46493 * 119.99953 * 2 1 4 4 C 1.50696 * 109.47108 * 269.99608 * 3 2 1 5 5 H 1.08003 * 120.00159 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00165 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00006 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 119.99982 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.47607 * 90.00019 * 8 6 4 10 10 H 1.48505 * 109.47162 * 210.00219 * 8 6 4 11 11 H 1.48504 * 109.47238 * 329.99677 * 8 6 4 12 12 C 1.34779 * 119.99757 * 179.97438 * 2 1 3 13 13 O 1.21360 * 119.99813 * 174.34829 * 12 2 1 14 14 C 1.49345 * 120.00319 * 354.34114 * 12 2 1 15 15 O 1.21385 * 119.99889 * 359.70413 * 14 12 2 16 16 N 1.34773 * 120.00195 * 179.70117 * 14 12 2 17 17 C 1.39820 * 120.00127 * 185.18793 * 16 14 12 18 18 C 1.38877 * 120.08440 * 326.52987 * 17 16 14 19 19 C 1.38123 * 119.94823 * 179.97438 * 18 17 16 20 20 C 1.50697 * 119.93741 * 179.97438 * 19 18 17 21 21 F 1.39901 * 109.46982 * 90.00042 * 20 19 18 22 22 F 1.39898 * 109.46922 * 209.99676 * 20 19 18 23 23 F 1.39898 * 109.47280 * 329.99746 * 20 19 18 24 24 C 1.38304 * 120.11690 * 359.72101 * 19 18 17 25 25 C 1.38264 * 120.17170 * 0.55397 * 24 19 18 26 26 C 1.38299 * 120.04914 * 359.44801 * 25 24 19 27 27 F 1.35106 * 120.05969 * 180.24861 * 26 25 24 28 28 H 1.08994 * 109.47720 * 264.06707 * 1 2 3 29 29 H 1.08993 * 109.47048 * 24.07476 * 1 2 3 30 30 H 1.09006 * 109.46806 * 144.07009 * 1 2 3 31 31 H 1.08997 * 109.47436 * 29.99624 * 3 2 1 32 32 H 1.09003 * 109.47062 * 149.99874 * 3 2 1 33 33 H 0.97004 * 120.00125 * 180.02562 * 7 6 4 34 34 H 0.96998 * 119.99935 * 5.18193 * 16 14 12 35 35 H 1.08001 * 120.02535 * 359.95646 * 18 17 16 36 36 H 1.08004 * 119.90767 * 180.30071 * 24 19 18 37 37 H 1.08002 * 119.97246 * 179.72016 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0982 1.0956 -2.2417 6 6 3.1269 2.8773 -1.6728 7 7 3.3466 3.2566 -2.9127 8 14 3.7350 3.9279 -0.2530 9 1 5.1083 3.5058 0.1226 10 1 3.7509 5.3548 -0.6644 11 1 2.8292 3.7586 0.9115 12 6 2.1389 -1.1672 0.0005 13 8 3.3480 -1.1699 -0.1030 14 6 1.3976 -2.4574 0.1286 15 8 0.1887 -2.4545 0.2377 16 7 2.0709 -3.6249 0.1231 17 6 1.3714 -4.8355 0.1336 18 6 0.1629 -4.9353 0.8106 19 6 -0.5261 -6.1324 0.8187 20 6 -1.8371 -6.2406 1.5539 21 9 -2.8857 -5.9115 0.6883 22 9 -2.0065 -7.5506 2.0147 23 9 -1.8361 -5.3603 2.6412 24 6 -0.0175 -7.2303 0.1489 25 6 1.1880 -7.1380 -0.5219 26 6 1.8837 -5.9429 -0.5346 27 9 3.0592 -5.8510 -1.1943 28 1 -0.3634 -0.1062 1.0221 29 1 -0.3633 0.9382 -0.4192 30 1 -0.3633 -0.8322 -0.6031 31 1 1.6084 2.0283 0.5137 32 1 3.1499 1.1383 0.5139 33 1 3.8241 4.0822 -3.0900 34 1 3.0408 -3.6253 0.1117 35 1 -0.2377 -4.0777 1.3306 36 1 -0.5614 -8.1634 0.1534 37 1 1.5844 -7.9987 -1.0401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095461131.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:04 Heat of formation + Delta-G solvation = -212.456590 kcal Electronic energy + Delta-G solvation = -30392.582534 eV Core-core repulsion = 25249.821049 eV Total energy + Delta-G solvation = -5142.761486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.43872 -49.39789 -47.96355 -47.87936 -41.15066 -39.51719 -38.10355 -35.97417 -34.73480 -32.58742 -32.02018 -30.51257 -28.79831 -26.49487 -26.26130 -25.00878 -23.61361 -22.46131 -21.57968 -19.91946 -19.00876 -18.76269 -18.69202 -18.01569 -17.54043 -17.12143 -17.05437 -16.59179 -16.17074 -15.80906 -15.64676 -15.05941 -14.86645 -14.76570 -14.54903 -14.38351 -14.28533 -14.15655 -14.04086 -14.01867 -13.82767 -13.62190 -13.38035 -12.95954 -12.58254 -12.47576 -12.41825 -12.21270 -11.98052 -11.66590 -11.15518 -11.10559 -10.81156 -10.61883 -10.24465 -9.64802 -9.57813 -9.09559 -8.74171 -8.68167 -7.98255 -6.17351 -4.18217 0.22380 0.55438 1.57425 2.21318 2.36715 2.80461 3.23071 3.28732 3.30364 3.32649 3.44542 3.59854 3.64533 3.78234 4.11047 4.18602 4.31025 4.46020 4.49649 4.66205 4.88448 5.14090 5.15639 5.41294 5.46776 5.63097 5.70165 5.79637 5.95233 6.21549 6.36707 6.43054 6.69022 6.78131 6.99983 7.44863 7.52805 7.88032 8.26810 8.47017 8.85226 9.40459 10.95680 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.017647 B = 0.002700 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.298230 B =10367.516010 C =11385.843181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.556 5.556 3 C 0.214 3.786 4 C -0.535 4.535 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.893 5.893 8 Si 0.876 3.124 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.265 1.265 12 C 0.498 3.502 13 O -0.515 6.515 14 C 0.514 3.486 15 O -0.496 6.496 16 N -0.648 5.648 17 C 0.120 3.880 18 C -0.051 4.051 19 C -0.178 4.178 20 C 0.514 3.486 21 F -0.172 7.172 22 F -0.177 7.177 23 F -0.173 7.173 24 C -0.059 4.059 25 C -0.135 4.135 26 C 0.109 3.891 27 F -0.123 7.123 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.266 0.734 34 H 0.430 0.570 35 H 0.167 0.833 36 H 0.148 0.852 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.495 -22.714 9.207 25.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.287 5.287 3 C 0.094 3.906 4 C -0.573 4.573 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.531 5.531 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.278 3.722 13 O -0.392 6.392 14 C 0.298 3.702 15 O -0.370 6.370 16 N -0.296 5.296 17 C 0.024 3.976 18 C -0.071 4.071 19 C -0.180 4.180 20 C 0.460 3.540 21 F -0.154 7.154 22 F -0.158 7.158 23 F -0.154 7.154 24 C -0.078 4.078 25 C -0.154 4.154 26 C 0.087 3.913 27 F -0.101 7.101 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.269 0.731 35 H 0.184 0.816 36 H 0.166 0.834 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.610 -22.401 9.093 25.663 hybrid contribution 0.811 0.646 0.446 1.128 sum -7.799 -21.755 9.539 25.002 Atomic orbital electron populations 1.22104 0.78825 1.03896 1.01786 1.47791 1.07767 1.06007 1.67115 1.19908 0.92510 0.79130 0.99068 1.21241 1.37669 1.07562 0.90835 0.90530 1.24844 0.95072 0.97223 0.95688 1.69888 1.40942 1.23549 1.18687 0.86850 0.80135 0.79932 0.82782 1.19782 1.20881 1.18972 1.19365 0.87506 0.84151 0.81177 1.90775 1.13244 1.86306 1.48878 1.21018 0.87683 0.85517 0.75985 1.90687 1.13838 1.86917 1.45520 1.43138 1.11920 1.02721 1.71785 1.17576 0.95117 0.85688 0.99268 1.21077 0.92917 0.97580 0.95514 1.19869 0.95978 0.96665 1.05479 1.18090 0.84862 0.73708 0.77383 1.93253 1.60197 1.92323 1.69596 1.93191 1.96130 1.37030 1.89457 1.93219 1.96792 1.69155 1.56273 1.20781 0.94822 0.97946 0.94242 1.20964 0.95429 0.96813 1.02184 1.17687 0.84282 0.94560 0.94740 1.91573 1.43876 1.96714 1.77949 0.92814 0.90643 0.89750 0.94201 0.94195 0.92362 0.73109 0.81578 0.83445 0.82854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 9.26 59.85 0.55 1.83 16 2 N -0.56 -11.33 2.86 -183.52 -0.52 -11.85 16 3 C 0.21 5.01 4.16 -5.20 -0.02 4.99 16 4 C -0.53 -14.96 9.94 -34.44 -0.34 -15.30 16 5 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 8 Si 0.88 20.77 27.47 -169.99 -4.67 16.10 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -5.86 6.54 56.52 0.37 -5.50 16 12 C 0.50 9.76 7.72 -11.63 -0.09 9.67 16 13 O -0.52 -11.44 16.12 5.49 0.09 -11.35 16 14 C 0.51 8.13 7.62 -11.64 -0.09 8.04 16 15 O -0.50 -7.82 10.59 5.47 0.06 -7.76 16 16 N -0.65 -8.54 5.22 -10.24 -0.05 -8.59 16 17 C 0.12 1.38 6.34 -83.65 -0.53 0.85 16 18 C -0.05 -0.56 8.06 -39.39 -0.32 -0.88 16 19 C -0.18 -1.66 5.45 -104.64 -0.57 -2.23 16 20 C 0.51 4.90 3.36 36.00 0.12 5.02 16 21 F -0.17 -1.81 17.30 2.25 0.04 -1.77 16 22 F -0.18 -1.54 16.46 2.25 0.04 -1.50 16 23 F -0.17 -1.83 16.46 2.25 0.04 -1.79 16 24 C -0.06 -0.42 9.39 -39.55 -0.37 -0.79 16 25 C -0.13 -0.98 10.02 -39.55 -0.40 -1.37 16 26 C 0.11 1.08 7.31 -39.23 -0.29 0.80 16 27 F -0.12 -1.33 16.94 2.25 0.04 -1.29 16 28 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 29 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 30 H 0.08 1.38 5.85 -51.93 -0.30 1.07 16 31 H 0.04 0.88 7.13 -51.93 -0.37 0.51 16 32 H 0.04 0.97 6.93 -51.93 -0.36 0.61 16 33 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.43 5.31 8.11 -40.82 -0.33 4.97 16 35 H 0.17 2.03 5.62 -52.49 -0.30 1.74 16 36 H 0.15 0.69 7.60 -52.48 -0.40 0.29 16 37 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 340.06 15.07 5.12 5.12 Total: -1.00 -31.83 340.06 -4.40 -36.23 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -2.91 Total: 1.98 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: -2.44 Total: 12.66 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.20 Total: -46.63 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.15 Total: -19.11 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 0.15 Total: -6.35 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.83 -4.40 -36.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095461131.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.230 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds