Wall clock time and date at job start Tue Mar 31 2020 06:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.47288 * 2 1 4 4 N 1.31239 * 124.05386 * 270.14934 * 3 2 1 5 5 N 1.27330 * 120.03651 * 180.35585 * 4 3 2 6 6 S 1.56641 * 109.74725 * 359.71739 * 5 4 3 7 7 C 1.38263 * 124.05860 * 89.99841 * 3 2 1 8 8 C 1.47138 * 128.47528 * 359.97438 * 7 3 2 9 9 O 1.21641 * 119.99976 * 359.70582 * 8 7 3 10 10 N 1.34778 * 119.99675 * 179.70033 * 8 7 3 11 11 C 1.40053 * 119.99707 * 185.52976 * 10 8 7 12 12 C 1.38672 * 120.10660 * 24.82737 * 11 10 8 13 13 C 1.38238 * 120.00807 * 180.02562 * 12 11 10 14 14 C 1.38306 * 120.21346 * 0.02562 * 13 12 11 15 15 C 1.38197 * 120.20209 * 359.97438 * 14 13 12 16 16 C 1.38781 * 119.99450 * 0.02562 * 15 14 13 17 17 S 1.76193 * 120.10812 * 179.97438 * 16 15 14 18 18 C 1.81404 * 102.99965 * 359.97438 * 17 16 15 19 19 C 1.50703 * 109.47175 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99968 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99775 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00453 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99796 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46990 * 89.99564 * 23 21 19 25 25 H 1.48504 * 109.46981 * 209.99807 * 23 21 19 26 26 H 1.48494 * 109.46741 * 329.99603 * 23 21 19 27 27 H 1.09004 * 109.47427 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47197 * 300.00605 * 1 2 3 29 29 H 1.09005 * 109.47004 * 60.00150 * 1 2 3 30 30 H 1.09001 * 109.47197 * 239.99395 * 2 1 3 31 31 H 1.09005 * 109.47004 * 119.99850 * 2 1 3 32 32 H 0.97001 * 120.00206 * 5.53562 * 10 8 7 33 33 H 1.08000 * 119.99110 * 0.05014 * 12 11 10 34 34 H 1.08003 * 119.89233 * 179.97438 * 13 12 11 35 35 H 1.08001 * 119.89276 * 180.27861 * 14 13 12 36 36 H 1.08001 * 120.00084 * 180.02562 * 15 14 13 37 37 H 1.08994 * 109.47334 * 300.00321 * 18 17 16 38 38 H 1.09010 * 109.46782 * 60.00411 * 18 17 16 39 39 H 0.96997 * 120.00106 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2747 2.1147 -1.0873 5 7 2.7048 3.3098 -0.9981 6 16 2.8502 3.7088 0.5096 7 6 2.2904 2.1509 1.1455 8 6 2.1427 1.7347 2.5490 9 8 1.7413 0.6172 2.8130 10 7 2.4523 2.5917 3.5421 11 6 2.4230 2.1600 4.8741 12 6 2.5905 0.8164 5.1736 13 6 2.5607 0.3924 6.4890 14 6 2.3637 1.3044 7.5100 15 6 2.1959 2.6454 7.2214 16 6 2.2242 3.0804 5.9039 17 16 2.0099 4.7894 5.5325 18 6 1.7930 5.5388 7.1703 19 6 1.5942 7.0251 7.0203 20 1 1.5974 7.4739 6.0380 21 6 1.4080 7.8118 8.1371 22 7 1.4035 7.2652 9.3333 23 14 1.1608 9.6541 7.9512 24 1 -0.2880 9.9472 7.8087 25 1 1.6906 10.3483 9.1524 26 1 1.8834 10.1311 6.7448 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.6952 3.5076 3.3343 33 1 2.7446 0.1013 4.3791 34 1 2.6910 -0.6546 6.7202 35 1 2.3459 0.9681 8.5361 36 1 2.0426 3.3548 8.0212 37 1 0.9203 5.1030 7.6565 38 1 2.6790 5.3497 7.7765 39 1 1.2722 7.8187 10.1190 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953543.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:14 Heat of formation + Delta-G solvation = 55.299309 kcal Electronic energy + Delta-G solvation = -24624.077875 eV Core-core repulsion = 20978.324033 eV Total energy + Delta-G solvation = -3645.753842 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 349.066 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.38056 -40.44133 -38.25876 -35.08234 -34.57850 -33.34203 -31.18425 -30.87543 -29.49863 -28.69052 -27.65966 -24.50129 -23.69463 -23.06398 -22.82375 -21.57180 -20.38888 -18.78861 -18.31117 -17.31542 -16.75613 -16.39884 -16.30408 -15.47697 -15.22527 -15.07820 -14.78658 -14.48045 -14.38279 -14.15968 -13.56774 -13.24597 -13.14996 -13.09524 -12.80043 -12.45925 -12.39899 -12.36036 -11.92765 -11.71109 -11.37694 -11.22150 -11.01493 -10.84442 -10.65879 -10.54137 -10.23037 -10.16931 -10.08974 -9.95578 -9.78197 -9.35579 -9.27553 -8.71979 -8.17674 -6.73646 -6.35106 -4.41462 -0.61282 0.48750 1.15251 1.33108 1.55402 1.71100 2.21514 2.66022 2.72858 3.16938 3.23515 3.26756 3.46496 3.54750 3.96630 4.18169 4.22350 4.34652 4.81100 5.02200 5.02785 5.04504 5.13374 5.22527 5.42036 5.49354 5.59015 5.66911 5.67385 5.83870 5.99188 6.05491 6.28370 6.39233 6.55070 6.73709 6.84637 6.87821 7.12065 7.13423 7.34397 7.57170 7.71582 7.79321 8.59409 9.23259 10.75920 Molecular weight = 349.07amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.003033 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.014449 B = 9231.005654 C =11157.523754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C 0.109 3.891 4 N -0.250 5.250 5 N -0.251 5.251 6 S 0.432 5.568 7 C -0.297 4.297 8 C 0.604 3.396 9 O -0.496 6.496 10 N -0.649 5.649 11 C 0.145 3.855 12 C -0.114 4.114 13 C -0.121 4.121 14 C -0.113 4.113 15 C -0.114 4.114 16 C -0.091 4.091 17 S -0.172 6.172 18 C 0.080 3.920 19 C -0.522 4.522 20 H 0.069 0.931 21 C 0.070 3.930 22 N -0.888 5.888 23 Si 0.908 3.092 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.270 1.270 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.413 0.587 33 H 0.144 0.856 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.137 0.863 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.813 -13.378 -13.089 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 C -0.039 4.039 4 N -0.115 5.115 5 N -0.232 5.232 6 S 0.569 5.431 7 C -0.438 4.438 8 C 0.389 3.611 9 O -0.372 6.372 10 N -0.293 5.293 11 C 0.045 3.955 12 C -0.135 4.135 13 C -0.143 4.143 14 C -0.133 4.133 15 C -0.138 4.138 16 C -0.207 4.207 17 S 0.074 5.926 18 C -0.067 4.067 19 C -0.561 4.561 20 H 0.087 0.913 21 C -0.135 4.135 22 N -0.525 5.525 23 Si 0.735 3.265 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.195 1.195 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.250 0.750 33 H 0.162 0.838 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.155 0.845 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.059 -11.851 -14.971 19.337 hybrid contribution -0.451 -0.221 1.784 1.854 sum 2.609 -12.072 -13.186 18.067 Atomic orbital electron populations 1.21677 0.93191 1.02804 1.02375 1.20326 0.97070 0.86290 1.05072 1.22996 0.96306 0.99699 0.84885 1.70632 1.14030 0.99031 1.27824 1.78867 1.17969 1.10572 1.15818 1.82847 1.45247 1.13813 1.01155 1.27635 1.15868 1.00704 0.99545 1.16392 0.77812 0.85019 0.81907 1.90777 1.44169 1.19678 1.82562 1.43292 1.66677 1.14819 1.04547 1.17113 1.04036 0.93109 0.81252 1.21190 1.00864 0.93787 0.97662 1.20953 1.01830 0.99429 0.92082 1.21083 1.00159 0.92813 0.99250 1.21247 1.00962 0.96758 0.94870 1.21812 1.04831 0.98690 0.95337 1.85036 1.88435 0.95540 1.23593 1.21385 1.00757 0.98476 0.86063 1.20597 1.52026 0.89586 0.93889 0.91302 1.24943 0.94387 0.99512 0.94703 1.69933 1.48200 1.36438 0.97951 0.86322 0.78694 0.83523 0.77987 1.20231 1.20839 1.19457 0.91166 0.92033 0.92509 0.89369 0.87525 0.74976 0.83818 0.85913 0.85923 0.84520 0.93603 0.93597 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.89 37.16 0.37 -0.88 16 2 C -0.05 -0.43 5.94 -27.88 -0.17 -0.60 16 3 C 0.11 1.22 6.25 -82.83 -0.52 0.71 16 4 N -0.25 -3.06 11.54 33.42 0.39 -2.67 16 5 N -0.25 -3.01 12.51 60.35 0.75 -2.26 16 6 S 0.43 4.34 23.06 -107.50 -2.48 1.86 16 7 C -0.30 -3.40 6.80 -35.96 -0.24 -3.65 16 8 C 0.60 7.90 7.61 -12.65 -0.10 7.80 16 9 O -0.50 -7.08 12.06 5.24 0.06 -7.02 16 10 N -0.65 -8.99 5.17 -10.76 -0.06 -9.05 16 11 C 0.15 2.29 6.44 -83.45 -0.54 1.76 16 12 C -0.11 -1.65 8.71 -39.42 -0.34 -1.99 16 13 C -0.12 -1.61 10.04 -39.56 -0.40 -2.01 16 14 C -0.11 -1.60 10.04 -39.57 -0.40 -2.00 16 15 C -0.11 -1.94 9.36 -39.40 -0.37 -2.31 16 16 C -0.09 -1.62 6.12 -38.89 -0.24 -1.85 16 17 S -0.17 -3.39 20.55 -107.50 -2.21 -5.60 16 18 C 0.08 1.90 4.09 36.01 0.15 2.05 16 19 C -0.52 -13.63 9.13 -34.44 -0.31 -13.94 16 20 H 0.07 1.78 7.71 -52.48 -0.40 1.37 16 21 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 22 N -0.89 -24.36 13.29 55.43 0.74 -23.62 16 23 Si 0.91 20.21 29.54 -169.99 -5.02 15.19 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.11 1.02 6.48 -51.93 -0.34 0.69 16 32 H 0.41 5.31 7.09 -40.82 -0.29 5.02 16 33 H 0.14 1.99 5.79 -52.49 -0.30 1.69 16 34 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 35 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.14 2.50 5.88 -52.49 -0.31 2.19 16 37 H 0.05 1.15 7.75 -51.93 -0.40 0.75 16 38 H 0.05 1.14 7.75 -51.92 -0.40 0.73 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 360.36 15.07 5.43 5.43 Total: -1.00 -28.72 360.36 -9.72 -38.44 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.12 Total: 4.49 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -3.20 Total: -15.19 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 1.82 Total: -37.60 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: 0.06 Total: -7.02 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -4.69 Total: -3.74 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.72 -9.72 -38.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953543.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.738 kcal (2) G-P(sol) polarization free energy of solvation -28.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds