Wall clock time and date at job start Tue Mar 31 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47621 * 2 1 4 4 C 1.50701 * 109.46638 * 120.00116 * 2 1 3 5 5 H 1.08007 * 120.00288 * 119.99978 * 4 2 1 6 6 C 1.37877 * 120.00203 * 299.99433 * 4 2 1 7 7 N 1.31510 * 120.00301 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99800 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47330 * 89.99543 * 8 6 4 10 10 H 1.48497 * 109.46803 * 209.99962 * 8 6 4 11 11 H 1.48501 * 109.46945 * 329.99339 * 8 6 4 12 12 N 1.46497 * 109.47079 * 239.99460 * 2 1 3 13 13 C 1.46497 * 120.00330 * 300.00586 * 12 2 1 14 14 S 1.65603 * 119.99697 * 120.00216 * 12 2 1 15 15 O 1.42095 * 106.40352 * 336.46602 * 14 12 2 16 16 O 1.42099 * 106.40319 * 203.54279 * 14 12 2 17 17 C 1.76200 * 107.21640 * 90.00193 * 14 12 2 18 18 C 1.38274 * 119.94420 * 90.00282 * 17 14 12 19 19 C 1.38141 * 120.05552 * 180.27944 * 18 17 14 20 20 C 1.38738 * 119.94395 * 359.44290 * 19 18 17 21 21 O 1.35897 * 120.05494 * 180.25974 * 20 19 18 22 22 C 1.42901 * 117.00045 * 0.27113 * 21 20 19 23 23 C 1.53001 * 109.47019 * 180.02562 * 22 21 20 24 24 F 1.39898 * 109.47464 * 300.00440 * 23 22 21 25 25 F 1.39905 * 109.46978 * 60.00060 * 23 22 21 26 26 C 1.38729 * 119.88657 * 0.52992 * 20 19 18 27 27 C 1.38149 * 119.94477 * 359.75178 * 26 20 19 28 28 H 1.09000 * 109.46753 * 59.99634 * 1 2 3 29 29 H 1.08995 * 109.47107 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46959 * 300.00085 * 1 2 3 31 31 H 0.97001 * 120.00317 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47010 * 269.99729 * 13 12 2 33 33 H 1.09000 * 109.47020 * 30.00199 * 13 12 2 34 34 H 1.09007 * 109.47216 * 149.99896 * 13 12 2 35 35 H 1.08002 * 119.96836 * 359.97438 * 18 17 14 36 36 H 1.07998 * 120.02987 * 179.70379 * 19 18 17 37 37 H 1.08999 * 109.46998 * 299.99941 * 22 21 20 38 38 H 1.08996 * 109.46963 * 60.00612 * 22 21 20 39 39 H 1.09003 * 109.47247 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.02644 * 179.72419 * 26 20 19 41 41 H 1.07996 * 119.96812 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2394 2.4828 7 7 2.1379 -0.8591 3.5566 8 14 0.6249 1.2791 2.6541 9 1 -0.8027 0.8729 2.6996 10 1 0.9761 1.9951 3.9068 11 1 0.8474 2.1766 1.4921 12 7 2.0184 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9705 0.1140 -2.2862 15 8 2.6906 1.4971 -2.1192 16 8 2.8228 -0.5647 -3.5258 17 6 4.6445 -0.1184 -1.7879 18 6 5.3637 -1.1978 -2.2670 19 6 6.6745 -1.3855 -1.8734 20 6 7.2728 -0.4834 -1.0056 21 8 8.5638 -0.6629 -0.6211 22 6 9.2474 -1.7991 -1.1538 23 6 10.6776 -1.8344 -0.6112 24 9 11.3488 -0.6667 -0.9894 25 9 10.6448 -1.9221 0.7847 26 6 6.5493 0.5991 -0.5268 27 6 5.2369 0.7791 -0.9189 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.9033 -0.5279 4.4376 32 1 2.4156 -2.7378 -0.9716 33 1 0.6903 -2.3002 -0.9846 34 1 1.6238 -2.2853 -2.5002 35 1 4.8987 -1.8975 -2.9458 36 1 7.2343 -2.2313 -2.2441 37 1 8.7247 -2.7089 -0.8587 38 1 9.2727 -1.7310 -2.2413 39 1 11.1989 -2.7014 -1.0172 40 1 7.0115 1.3002 0.1523 41 1 4.6731 1.6214 -0.5460 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096009900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:01 Heat of formation + Delta-G solvation = -171.832857 kcal Electronic energy + Delta-G solvation = -29178.923702 eV Core-core repulsion = 24629.878613 eV Total energy + Delta-G solvation = -4549.045089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.099 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.28401 -47.31345 -40.32461 -37.62330 -36.87370 -36.44279 -35.40935 -32.54724 -31.64627 -30.88116 -30.05492 -29.57196 -25.83946 -25.02765 -24.32423 -22.97533 -22.13945 -20.87804 -18.95870 -18.60429 -17.87211 -17.61129 -17.26138 -17.21055 -16.79663 -16.48941 -15.89514 -15.79120 -15.34356 -14.79213 -14.48478 -14.15864 -13.93269 -13.66276 -13.63598 -13.49211 -13.41450 -13.09837 -12.99795 -12.74247 -12.63610 -12.31944 -12.15192 -12.01047 -11.68435 -11.55672 -11.48349 -11.45175 -11.26673 -11.06996 -11.04487 -10.67348 -10.45941 -10.15998 -9.59899 -9.43633 -9.06828 -8.68518 -8.63669 -8.12261 -6.17914 -4.19611 0.79820 1.07937 1.32284 2.51901 3.21558 3.32588 3.33274 3.35198 3.36794 3.68176 3.69240 3.98827 4.21135 4.31482 4.39935 4.55185 4.57557 4.77570 4.86774 4.87965 5.12858 5.27170 5.38616 5.52097 5.54117 5.90199 5.93995 6.06868 6.11228 6.16492 6.22029 6.25106 6.36522 6.51156 6.52256 6.59265 6.82292 7.07434 7.25744 7.30570 7.59262 8.40670 8.85780 9.42517 10.94519 Molecular weight = 349.10amu Principal moments of inertia in cm(-1) A = 0.012278 B = 0.003428 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.902183 B = 8165.415864 C = 9511.305314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.237 3.763 3 H 0.059 0.941 4 C -0.529 4.529 5 H 0.082 0.918 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.874 3.126 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.260 1.260 12 N -0.975 5.975 13 C 0.096 3.904 14 S 2.692 3.308 15 O -0.962 6.962 16 O -0.974 6.974 17 C -0.700 4.700 18 C 0.019 3.981 19 C -0.233 4.233 20 C 0.173 3.827 21 O -0.300 6.300 22 C 0.001 3.999 23 C 0.274 3.726 24 F -0.198 7.198 25 F -0.196 7.196 26 C -0.164 4.164 27 C 0.034 3.966 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.266 0.734 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.141 0.859 36 H 0.133 0.867 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.132 0.868 40 H 0.140 0.860 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.489 -4.117 -11.247 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.133 3.867 3 H 0.076 0.924 4 C -0.568 4.568 5 H 0.100 0.900 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.704 3.296 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.184 1.184 12 N -0.814 5.814 13 C -0.050 4.050 14 S 2.782 3.218 15 O -0.953 6.953 16 O -0.965 6.965 17 C -0.786 4.786 18 C 0.000 4.000 19 C -0.252 4.252 20 C 0.128 3.872 21 O -0.213 6.213 22 C -0.075 4.075 23 C 0.220 3.780 24 F -0.179 7.179 25 F -0.177 7.177 26 C -0.184 4.184 27 C 0.014 3.986 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.149 0.851 40 H 0.158 0.842 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 12.366 -3.522 -11.605 17.321 hybrid contribution 0.067 0.216 0.891 0.919 sum 12.433 -3.307 -10.714 16.742 Atomic orbital electron populations 1.22433 0.98649 1.01433 0.99376 1.19140 0.91077 0.93438 0.83064 0.92376 1.21213 1.32810 1.14467 0.88283 0.89970 1.24886 0.95527 0.96516 0.95720 1.69870 1.45018 1.40096 0.97999 0.87054 0.80868 0.84006 0.77682 1.20245 1.22117 1.18442 1.57113 1.63473 1.21828 1.38957 1.21362 1.02273 0.81136 1.00186 1.01803 0.73322 0.73517 0.73131 1.93545 1.83919 1.31421 1.86379 1.93503 1.86190 1.75745 1.41036 1.31079 1.26727 1.06141 1.14640 1.20632 0.92767 0.93342 0.93242 1.21207 0.97626 1.01950 1.04457 1.19184 0.82354 0.93880 0.91818 1.86150 1.23054 1.44940 1.67180 1.24090 0.91872 0.90934 1.00606 1.22025 0.91417 0.87184 0.77334 1.93029 1.81857 1.52233 1.90826 1.93052 1.97164 1.96518 1.30948 1.20532 0.94616 0.98726 1.04507 1.20774 0.93123 0.95604 0.89058 0.94494 0.92148 0.93137 0.92428 0.93258 0.90256 0.91552 0.84162 0.84954 0.88413 0.88604 0.85060 0.84201 0.83323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 8.65 37.16 0.32 -3.01 16 2 C 0.24 5.33 2.21 -69.08 -0.15 5.18 16 3 H 0.06 1.36 5.97 -51.93 -0.31 1.05 16 4 C -0.53 -13.69 8.95 -34.44 -0.31 -14.00 16 5 H 0.08 2.29 7.89 -52.48 -0.41 1.88 16 6 C 0.08 2.09 5.45 -17.82 -0.10 1.99 16 7 N -0.89 -25.91 13.96 55.43 0.77 -25.14 16 8 Si 0.87 20.82 24.37 -169.99 -4.14 16.67 16 9 H -0.28 -6.35 6.87 56.52 0.39 -5.96 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.26 -5.98 6.53 56.52 0.37 -5.61 16 12 N -0.97 -18.92 3.06 -115.86 -0.35 -19.27 16 13 C 0.10 1.59 9.90 59.85 0.59 2.19 16 14 S 2.69 49.74 5.69 -107.50 -0.61 49.13 16 15 O -0.96 -19.97 15.84 -57.17 -0.91 -20.88 16 16 O -0.97 -18.12 15.88 -57.17 -0.91 -19.03 16 17 C -0.70 -11.84 5.97 -39.56 -0.24 -12.08 16 18 C 0.02 0.28 9.52 -39.60 -0.38 -0.09 16 19 C -0.23 -2.97 9.04 -39.43 -0.36 -3.33 16 20 C 0.17 2.45 6.69 -39.22 -0.26 2.19 16 21 O -0.30 -3.85 10.02 -19.42 -0.19 -4.05 16 22 C 0.00 0.01 4.96 37.16 0.18 0.20 16 23 C 0.27 1.99 5.63 37.16 0.21 2.20 16 24 F -0.20 -1.98 17.28 2.25 0.04 -1.94 16 25 F -0.20 -2.10 17.28 2.25 0.04 -2.06 16 26 C -0.16 -2.54 9.99 -39.43 -0.39 -2.93 16 27 C 0.03 0.57 9.51 -39.61 -0.38 0.19 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.17 6.66 -51.93 -0.35 0.82 16 30 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 31 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.28 6.43 -51.93 -0.33 0.95 16 34 H 0.07 0.96 7.02 -51.92 -0.36 0.59 16 35 H 0.14 1.75 7.61 -52.49 -0.40 1.35 16 36 H 0.13 1.17 6.30 -52.49 -0.33 0.84 16 37 H 0.10 0.61 7.65 -51.93 -0.40 0.22 16 38 H 0.10 0.53 7.67 -51.93 -0.40 0.13 16 39 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 41 H 0.15 2.44 7.61 -52.49 -0.40 2.04 16 LS Contribution 355.24 15.07 5.35 5.35 Total: -1.00 -34.10 355.24 -6.90 -41.00 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -4.74 Total: 1.52 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -1.25 Total: -21.30 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.42 Total: -44.41 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -2.01 Total: -43.95 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.08 Total: -4.01 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.14 Total: 16.67 kcal Atomic # 16 Polarization: 49.74 SS G_CDS: -0.61 Total: 49.13 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.10 -6.90 -41.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096009900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.834 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds