Wall clock time and date at job start Tue Mar 31 2020 06:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.46498 * 119.99673 * 60.00290 * 12 2 1 14 14 S 1.65593 * 119.99939 * 239.99810 * 12 2 1 15 15 O 1.42101 * 106.40455 * 203.53915 * 14 12 2 16 16 O 1.42093 * 106.40554 * 336.46252 * 14 12 2 17 17 C 1.76201 * 107.21631 * 90.00236 * 14 12 2 18 18 C 1.38266 * 119.94418 * 269.72540 * 17 14 12 19 19 C 1.38142 * 120.05425 * 179.72865 * 18 17 14 20 20 C 1.38733 * 119.94818 * 0.56527 * 19 18 17 21 21 O 1.35894 * 120.05812 * 179.68575 * 20 19 18 22 22 C 1.42898 * 117.00179 * 0.02562 * 21 20 19 23 23 C 1.52999 * 109.46918 * 180.02562 * 22 21 20 24 24 F 1.39899 * 109.47274 * 299.99639 * 23 22 21 25 25 F 1.39901 * 109.47591 * 60.00098 * 23 22 21 26 26 C 1.38734 * 119.88177 * 359.70738 * 20 19 18 27 27 C 1.38145 * 119.94753 * 0.02562 * 26 20 19 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 31 31 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 33 33 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 34 34 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 35 35 H 1.07996 * 119.97104 * 359.97438 * 18 17 14 36 36 H 1.08004 * 120.02772 * 180.24862 * 19 18 17 37 37 H 1.08998 * 109.46832 * 299.99978 * 22 21 20 38 38 H 1.09000 * 109.47146 * 60.00107 * 22 21 20 39 39 H 1.09002 * 109.47008 * 179.97438 * 23 22 21 40 40 H 1.08005 * 120.02805 * 179.97438 * 26 20 19 41 41 H 1.07999 * 119.97111 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7119 -0.8789 2.9814 16 8 3.5794 1.1829 1.5748 17 6 1.8961 0.8534 3.4710 18 6 1.4163 2.1335 3.2637 19 6 0.5694 2.7132 4.1884 20 6 0.2097 2.0144 5.3316 21 8 -0.6182 2.5849 6.2459 22 6 -1.0813 3.9074 5.9655 23 6 -1.9941 4.3791 7.0992 24 9 -3.0888 3.5147 7.2068 25 9 -1.2807 4.3801 8.3027 26 6 0.6970 0.7323 5.5401 27 6 1.5392 0.1549 4.6096 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 0.7092 1.1618 -3.4843 32 1 2.4157 -2.7377 0.9716 33 1 1.6238 -2.2853 2.5002 34 1 0.6904 -2.3002 0.9846 35 1 1.7007 2.6791 2.3761 36 1 0.1917 3.7116 4.0240 37 1 -0.2284 4.5809 5.8822 38 1 -1.6368 3.9067 5.0277 39 1 -2.3470 5.3880 6.8856 40 1 0.4188 0.1863 6.4294 41 1 1.9191 -0.8430 4.7717 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096009901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:04 Heat of formation + Delta-G solvation = -180.392868 kcal Electronic energy + Delta-G solvation = -28917.160027 eV Core-core repulsion = 24367.743748 eV Total energy + Delta-G solvation = -4549.416279 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.099 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.37671 -47.40589 -40.44445 -37.74113 -36.70910 -36.19079 -35.24148 -32.60409 -31.73987 -31.00628 -29.66555 -29.11548 -25.61621 -25.16256 -24.40937 -23.09125 -22.21076 -20.72868 -19.06041 -18.55816 -17.96500 -17.61912 -17.31687 -17.08806 -16.78633 -16.25784 -16.00160 -15.75840 -15.17740 -14.75583 -14.44992 -14.25529 -13.88104 -13.75467 -13.66982 -13.56415 -13.32679 -13.11293 -12.95269 -12.81212 -12.74586 -12.01775 -11.76510 -11.66122 -11.60377 -11.49385 -11.37741 -11.23643 -11.14037 -10.99430 -10.82601 -10.64643 -10.40298 -10.28345 -10.01093 -9.26846 -9.21138 -8.76343 -8.47747 -7.97869 -6.09584 -4.15738 0.76250 1.07145 1.18686 2.40797 3.24055 3.27030 3.29988 3.35399 3.39978 3.61826 3.76675 3.90971 4.31486 4.33261 4.39954 4.47368 4.53907 4.69280 4.79823 4.88356 5.17362 5.22252 5.24584 5.46041 5.58167 5.76263 5.83962 6.02912 6.11671 6.13989 6.34858 6.44206 6.60915 6.74576 6.78267 6.94421 6.98696 7.41067 7.60953 7.76131 8.01283 8.24861 8.86941 9.50163 10.96228 Molecular weight = 349.10amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.002746 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.357972 B =10192.615065 C =11055.863619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.267 3.733 3 H 0.061 0.939 4 C -0.518 4.518 5 H 0.064 0.936 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.980 5.980 13 C 0.108 3.892 14 S 2.686 3.314 15 O -0.975 6.975 16 O -0.953 6.953 17 C -0.705 4.705 18 C 0.027 3.973 19 C -0.230 4.230 20 C 0.170 3.830 21 O -0.302 6.302 22 C 0.001 3.999 23 C 0.274 3.726 24 F -0.197 7.197 25 F -0.198 7.198 26 C -0.170 4.170 27 C 0.016 3.984 28 H 0.035 0.965 29 H 0.010 0.990 30 H 0.094 0.906 31 H 0.262 0.738 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.147 0.853 36 H 0.135 0.865 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.582 6.416 16.902 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.164 3.836 3 H 0.078 0.922 4 C -0.557 4.557 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.821 5.821 13 C -0.039 4.039 14 S 2.775 3.225 15 O -0.965 6.965 16 O -0.944 6.944 17 C -0.790 4.790 18 C 0.008 3.992 19 C -0.249 4.249 20 C 0.125 3.875 21 O -0.215 6.215 22 C -0.076 4.076 23 C 0.221 3.779 24 F -0.178 7.178 25 F -0.179 7.179 26 C -0.190 4.190 27 C -0.003 4.003 28 H 0.054 0.946 29 H 0.029 0.971 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.164 0.836 36 H 0.153 0.847 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.864 6.497 16.998 19.119 hybrid contribution -0.561 -0.064 -0.616 0.836 sum -6.425 6.434 16.382 18.736 Atomic orbital electron populations 1.22142 0.98299 0.99894 1.00628 1.18793 0.91281 0.93149 0.80386 0.92168 1.21369 1.31492 1.13007 0.89878 0.91750 1.24904 0.94956 0.95018 0.99006 1.69862 1.36667 1.22759 1.23688 0.86435 0.78599 0.79701 0.82651 1.19681 1.21025 1.20893 1.57424 1.70384 1.19592 1.34663 1.21201 1.01907 0.81742 0.99012 1.02136 0.74127 0.73481 0.72743 1.93507 1.68582 1.59320 1.75072 1.93566 1.73452 1.56006 1.71344 1.31411 1.23902 1.06943 1.16695 1.20798 0.89343 0.92034 0.97045 1.21303 1.05449 1.01857 0.96310 1.19189 0.88249 0.92521 0.87556 1.86128 1.61161 1.29319 1.44862 1.24115 0.99618 0.84714 0.99114 1.22036 0.80091 0.94389 0.81428 1.93038 1.55219 1.73208 1.96353 1.93032 1.78846 1.97446 1.48595 1.20498 1.02440 0.93654 1.02371 1.20751 0.90798 0.98659 0.90059 0.94633 0.97090 0.88785 0.92759 0.92922 0.93131 0.90819 0.83563 0.84738 0.88444 0.88302 0.84935 0.84372 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.95 37.16 0.33 -2.99 16 2 C 0.27 6.32 2.62 -69.08 -0.18 6.14 16 3 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 4 C -0.52 -13.63 8.37 -34.44 -0.29 -13.92 16 5 H 0.06 1.69 7.65 -52.49 -0.40 1.29 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.19 11.32 55.43 0.63 -23.56 16 8 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.98 -19.87 3.06 -115.85 -0.35 -20.23 16 13 C 0.11 1.86 9.53 59.85 0.57 2.43 16 14 S 2.69 51.83 5.64 -107.50 -0.61 51.22 16 15 O -0.97 -19.49 16.35 -57.17 -0.93 -20.43 16 16 O -0.95 -21.34 15.83 -57.17 -0.91 -22.24 16 17 C -0.70 -11.30 5.98 -39.56 -0.24 -11.54 16 18 C 0.03 0.40 9.52 -39.61 -0.38 0.03 16 19 C -0.23 -2.82 9.04 -39.43 -0.36 -3.18 16 20 C 0.17 2.13 6.69 -39.22 -0.26 1.87 16 21 O -0.30 -3.38 10.02 -19.41 -0.19 -3.58 16 22 C 0.00 0.01 4.96 37.16 0.18 0.19 16 23 C 0.27 1.72 5.63 37.16 0.21 1.93 16 24 F -0.20 -1.83 17.28 2.25 0.04 -1.79 16 25 F -0.20 -1.79 17.28 2.25 0.04 -1.76 16 26 C -0.17 -2.16 9.99 -39.43 -0.39 -2.56 16 27 C 0.02 0.23 9.51 -39.61 -0.38 -0.15 16 28 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 31 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.72 7.79 -51.92 -0.40 0.31 16 34 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 35 H 0.15 2.16 7.61 -52.49 -0.40 1.76 16 36 H 0.13 1.19 6.30 -52.48 -0.33 0.86 16 37 H 0.10 0.49 7.66 -51.93 -0.40 0.09 16 38 H 0.10 0.53 7.66 -51.93 -0.40 0.13 16 39 H 0.13 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.14 1.46 8.06 -52.48 -0.42 1.03 16 41 H 0.15 1.79 7.61 -52.49 -0.40 1.39 16 LS Contribution 362.87 15.07 5.47 5.47 Total: -1.00 -33.51 362.87 -8.02 -41.53 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.91 Total: -0.25 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -1.27 Total: -20.15 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.27 Total: -43.78 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -2.03 Total: -46.25 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.08 Total: -3.55 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 51.83 SS G_CDS: -0.61 Total: 51.22 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.51 -8.02 -41.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096009901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.864 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds