Wall clock time and date at job start Tue Mar 31 2020 06:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.46498 * 119.99673 * 60.00290 * 12 2 1 14 14 S 1.65593 * 119.99939 * 239.99810 * 12 2 1 15 15 O 1.42101 * 106.40455 * 203.53915 * 14 12 2 16 16 O 1.42093 * 106.40554 * 336.46252 * 14 12 2 17 17 C 1.76201 * 107.21631 * 90.00236 * 14 12 2 18 18 C 1.38266 * 119.94418 * 269.72540 * 17 14 12 19 19 C 1.38142 * 120.05425 * 179.72865 * 18 17 14 20 20 C 1.38733 * 119.94818 * 0.56527 * 19 18 17 21 21 O 1.35894 * 120.05812 * 179.68575 * 20 19 18 22 22 C 1.42898 * 117.00179 * 0.02562 * 21 20 19 23 23 C 1.52999 * 109.46918 * 180.02562 * 22 21 20 24 24 F 1.39899 * 109.47274 * 299.99639 * 23 22 21 25 25 F 1.39901 * 109.47591 * 60.00098 * 23 22 21 26 26 C 1.38734 * 119.88177 * 359.70738 * 20 19 18 27 27 C 1.38145 * 119.94753 * 0.02562 * 26 20 19 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 31 31 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 33 33 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 34 34 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 35 35 H 1.07996 * 119.97104 * 359.97438 * 18 17 14 36 36 H 1.08004 * 120.02772 * 180.24862 * 19 18 17 37 37 H 1.08998 * 109.46832 * 299.99978 * 22 21 20 38 38 H 1.09000 * 109.47146 * 60.00107 * 22 21 20 39 39 H 1.09002 * 109.47008 * 179.97438 * 23 22 21 40 40 H 1.08005 * 120.02805 * 179.97438 * 26 20 19 41 41 H 1.07999 * 119.97111 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7119 -0.8789 2.9814 16 8 3.5794 1.1829 1.5748 17 6 1.8961 0.8534 3.4710 18 6 1.4163 2.1335 3.2637 19 6 0.5694 2.7132 4.1884 20 6 0.2097 2.0144 5.3316 21 8 -0.6182 2.5849 6.2459 22 6 -1.0813 3.9074 5.9655 23 6 -1.9941 4.3791 7.0992 24 9 -3.0888 3.5147 7.2068 25 9 -1.2807 4.3801 8.3027 26 6 0.6970 0.7323 5.5401 27 6 1.5392 0.1549 4.6096 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 0.7092 1.1618 -3.4843 32 1 2.4157 -2.7377 0.9716 33 1 1.6238 -2.2853 2.5002 34 1 0.6904 -2.3002 0.9846 35 1 1.7007 2.6791 2.3761 36 1 0.1917 3.7116 4.0240 37 1 -0.2284 4.5809 5.8822 38 1 -1.6368 3.9067 5.0277 39 1 -2.3470 5.3880 6.8856 40 1 0.4188 0.1863 6.4294 41 1 1.9191 -0.8430 4.7717 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096009901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:03 Heat of formation + Delta-G solvation = -202.784489 kcal Electronic energy + Delta-G solvation = -28918.131001 eV Core-core repulsion = 24367.743748 eV Total energy + Delta-G solvation = -4550.387253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.099 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.93477 -47.98904 -41.34514 -38.68612 -38.31405 -37.87827 -36.84982 -34.51335 -32.57459 -31.93882 -30.89538 -30.50204 -27.27484 -26.98642 -25.11639 -24.16207 -23.03402 -22.48769 -20.01791 -19.79833 -18.86839 -18.55135 -18.51982 -18.10582 -18.01995 -17.75809 -17.05553 -16.71353 -16.57920 -16.16788 -15.68839 -15.23007 -14.99716 -14.87597 -14.66417 -14.61830 -14.55757 -14.35662 -14.17973 -13.93930 -13.68808 -13.41513 -13.33062 -13.15647 -13.11559 -12.97269 -12.77867 -12.57544 -12.46176 -12.23349 -12.20586 -12.16178 -12.01532 -11.93037 -11.74168 -11.11995 -10.48995 -10.23131 -9.79675 -9.59618 -8.10279 -6.23029 -0.54745 -0.19240 0.16499 1.42796 1.45992 1.56275 1.71977 2.06229 2.44157 2.48213 2.75693 2.88324 3.18304 3.26156 3.33085 3.45725 3.59634 3.74485 3.93165 4.06470 4.12381 4.17778 4.30045 4.34266 4.42739 4.70168 4.76559 4.84923 4.85708 4.99893 5.01155 5.04524 5.05852 5.14901 5.21052 5.44994 5.63440 5.75264 5.89172 6.05828 6.13973 6.31883 6.84327 7.45646 8.94138 Molecular weight = 349.10amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.002746 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.357972 B =10192.615065 C =11055.863619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.272 3.728 3 H 0.031 0.969 4 C -0.537 4.537 5 H 0.057 0.943 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.954 3.046 9 H -0.271 1.271 10 H -0.275 1.275 11 H -0.284 1.284 12 N -0.989 5.989 13 C 0.099 3.901 14 S 2.693 3.307 15 O -0.988 6.988 16 O -0.995 6.995 17 C -0.714 4.714 18 C 0.008 3.992 19 C -0.223 4.223 20 C 0.178 3.822 21 O -0.314 6.314 22 C -0.014 4.014 23 C 0.268 3.732 24 F -0.217 7.217 25 F -0.217 7.217 26 C -0.173 4.173 27 C 0.012 3.988 28 H 0.043 0.957 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.264 0.736 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.138 0.862 36 H 0.170 0.830 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.187 0.813 40 H 0.160 0.840 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.979 6.916 18.306 21.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.168 3.832 3 H 0.049 0.951 4 C -0.576 4.576 5 H 0.075 0.925 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.780 3.220 9 H -0.195 1.195 10 H -0.201 1.201 11 H -0.210 1.210 12 N -0.829 5.829 13 C -0.046 4.046 14 S 2.788 3.212 15 O -0.978 6.978 16 O -0.986 6.986 17 C -0.804 4.804 18 C -0.011 4.011 19 C -0.242 4.242 20 C 0.132 3.868 21 O -0.227 6.227 22 C -0.090 4.090 23 C 0.215 3.785 24 F -0.199 7.199 25 F -0.198 7.198 26 C -0.192 4.192 27 C -0.007 4.007 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.156 0.844 36 H 0.188 0.812 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.204 0.796 40 H 0.178 0.822 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.236 6.962 18.375 20.940 hybrid contribution -0.194 -0.118 -0.882 0.911 sum -7.430 6.844 17.493 20.200 Atomic orbital electron populations 1.21936 0.96987 1.00300 1.00433 1.18462 0.92140 0.91676 0.80956 0.95112 1.21677 1.31558 1.13016 0.91389 0.92522 1.25600 0.95233 0.95728 1.01517 1.69966 1.37315 1.23628 1.24276 0.85570 0.78252 0.78621 0.79564 1.19537 1.20066 1.20966 1.57296 1.70329 1.20842 1.34400 1.21416 1.01869 0.80094 1.01215 1.01462 0.74212 0.72748 0.72771 1.93476 1.69518 1.59823 1.75009 1.93506 1.75098 1.57140 1.72861 1.30727 1.25129 1.07833 1.16679 1.20881 0.90526 0.91907 0.97809 1.21580 1.04095 1.03211 0.95288 1.19309 0.87611 0.92442 0.87482 1.86131 1.60505 1.31503 1.44590 1.24600 1.00920 0.83052 1.00399 1.22703 0.79234 0.96305 0.80245 1.92997 1.56245 1.74239 1.96390 1.92995 1.79332 1.97575 1.49921 1.20772 1.01695 0.94122 1.02641 1.20932 0.90996 0.99243 0.89520 0.93829 0.94901 0.91222 0.92625 0.93602 0.89888 0.90282 0.84434 0.81250 0.86099 0.86326 0.79649 0.82205 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.06 8.95 71.98 0.64 -5.42 16 2 C 0.27 13.17 2.62 44.24 0.12 13.28 16 3 H 0.03 1.67 6.91 -2.39 -0.02 1.66 16 4 C -0.54 -28.81 8.37 25.60 0.21 -28.60 16 5 H 0.06 3.04 7.65 -2.91 -0.02 3.02 16 6 C 0.02 1.03 5.30 84.65 0.45 1.47 16 7 N -0.91 -50.29 11.32 21.45 0.24 -50.05 16 8 Si 0.95 42.91 29.54 68.60 2.03 44.94 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 N -0.99 -40.54 3.06 -520.44 -1.59 -42.14 16 13 C 0.10 3.38 9.53 127.77 1.22 4.60 16 14 S 2.69 105.82 5.64 -56.49 -0.32 105.51 16 15 O -0.99 -39.71 16.35 -128.00 -2.09 -41.80 16 16 O -1.00 -46.53 15.83 -128.00 -2.03 -48.56 16 17 C -0.71 -22.48 5.98 22.28 0.13 -22.35 16 18 C 0.01 0.24 9.52 22.25 0.21 0.45 16 19 C -0.22 -4.88 9.04 22.37 0.20 -4.68 16 20 C 0.18 3.93 6.69 22.51 0.15 4.08 16 21 O -0.31 -6.07 10.02 -92.36 -0.93 -6.99 16 22 C -0.01 -0.15 4.96 71.98 0.36 0.21 16 23 C 0.27 2.48 5.63 71.98 0.41 2.88 16 24 F -0.22 -3.54 17.28 44.97 0.78 -2.77 16 25 F -0.22 -3.43 17.28 44.97 0.78 -2.65 16 26 C -0.17 -3.95 9.99 22.37 0.22 -3.73 16 27 C 0.01 0.32 9.51 22.25 0.21 0.54 16 28 H 0.04 1.80 6.66 -2.39 -0.02 1.79 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 3.44 6.07 -2.39 -0.01 3.43 16 31 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 2.24 7.79 -2.38 -0.02 2.22 16 34 H 0.08 2.58 6.43 -2.39 -0.02 2.56 16 35 H 0.14 4.16 7.61 -2.91 -0.02 4.13 16 36 H 0.17 2.36 6.30 -2.91 -0.02 2.35 16 37 H 0.12 0.69 7.66 -2.39 -0.02 0.67 16 38 H 0.12 0.77 7.66 -2.39 -0.02 0.75 16 39 H 0.19 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 41 H 0.16 3.61 7.61 -2.91 -0.02 3.59 16 Total: -1.00 -74.13 362.87 2.47 -71.67 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.07 Total: 10.10 kcal Atomic # 6 Polarization: -41.79 SS G_CDS: 4.54 Total: -37.25 kcal Atomic # 7 Polarization: -90.83 SS G_CDS: -1.35 Total: -92.19 kcal Atomic # 8 Polarization: -92.31 SS G_CDS: -5.05 Total: -97.35 kcal Atomic # 9 Polarization: -6.97 SS G_CDS: 1.55 Total: -5.42 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 105.82 SS G_CDS: -0.32 Total: 105.51 kcal Total: -74.13 2.47 -71.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096009901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.118 kcal (2) G-P(sol) polarization free energy of solvation -74.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds