Wall clock time and date at job start Tue Mar 31 2020 06:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47175 * 110.98439 * 2 1 4 4 C 1.52984 * 108.73431 * 54.33020 * 3 2 1 5 5 N 1.46012 * 110.03453 * 50.27867 * 4 3 2 6 6 C 1.37098 * 118.53076 * 161.86416 * 5 4 3 7 7 H 1.08000 * 120.00209 * 201.50876 * 6 5 4 8 8 C 1.38948 * 119.99735 * 21.51490 * 6 5 4 9 9 N 1.31406 * 120.00457 * 16.58332 * 8 6 5 10 10 Si 1.86802 * 119.99624 * 196.58054 * 8 6 5 11 11 H 1.48501 * 109.47226 * 94.97753 * 10 8 6 12 12 H 1.48507 * 109.47128 * 214.97662 * 10 8 6 13 13 H 1.48495 * 109.47347 * 334.97513 * 10 8 6 14 14 C 1.33700 * 122.93855 * 341.84881 * 5 4 3 15 15 O 1.21293 * 118.62631 * 181.73571 * 14 5 4 16 16 C 1.46923 * 110.99534 * 122.88712 * 2 1 3 17 17 C 1.53161 * 109.35286 * 166.68272 * 16 2 1 18 18 C 1.53032 * 109.23898 * 182.62505 * 17 16 2 19 19 N 1.46838 * 109.53379 * 59.21851 * 18 17 16 20 20 C 1.46899 * 111.00067 * 174.20551 * 19 18 17 21 21 C 1.50702 * 109.47118 * 170.00071 * 20 19 18 22 22 C 1.33386 * 125.20362 * 89.99843 * 21 20 19 23 23 C 1.38420 * 114.92383 * 179.97438 * 22 21 20 24 24 C 1.33391 * 114.92116 * 359.97438 * 23 22 21 25 25 S 1.75882 * 125.20472 * 269.97969 * 21 20 19 26 26 C 1.46833 * 111.23754 * 298.33493 * 19 18 17 27 27 C 1.53039 * 109.52722 * 61.66810 * 26 19 18 28 28 H 1.08999 * 109.47681 * 297.11307 * 1 2 3 29 29 H 1.09004 * 109.47032 * 57.11381 * 1 2 3 30 30 H 1.08999 * 109.47393 * 177.11117 * 1 2 3 31 31 H 1.09002 * 109.58907 * 294.56029 * 3 2 1 32 32 H 1.09000 * 109.60125 * 174.11117 * 3 2 1 33 33 H 1.09003 * 109.37599 * 290.11001 * 4 3 2 34 34 H 1.09001 * 109.37846 * 170.45256 * 4 3 2 35 35 H 0.96995 * 120.00104 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.51328 * 62.68600 * 17 16 2 37 37 H 1.09005 * 109.50316 * 302.54786 * 17 16 2 38 38 H 1.09002 * 109.45777 * 299.20235 * 18 17 16 39 39 H 1.08997 * 109.46415 * 179.24204 * 18 17 16 40 40 H 1.09002 * 109.47028 * 50.00796 * 20 19 18 41 41 H 1.08996 * 109.47460 * 290.00400 * 20 19 18 42 42 H 1.08007 * 122.53957 * 359.96124 * 22 21 20 43 43 H 1.08004 * 122.54302 * 180.02562 * 23 22 21 44 44 H 1.08000 * 125.20223 * 180.26947 * 24 23 22 45 45 H 1.09004 * 109.46491 * 181.68910 * 26 19 18 46 46 H 1.09009 * 109.46422 * 301.65181 * 26 19 18 47 47 H 1.09003 * 109.50895 * 180.83628 * 27 26 19 48 48 H 1.09004 * 109.50817 * 60.70089 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9960 1.3741 0.0000 4 6 1.3832 2.1354 1.1770 5 7 1.5325 1.3611 2.4058 6 6 1.3987 2.0074 3.6074 7 1 1.8298 1.5808 4.5011 8 6 0.7084 3.2113 3.6756 9 7 -0.0841 3.5710 2.6911 10 14 0.9069 4.3186 5.1669 11 1 1.9496 5.3392 4.8905 12 1 -0.3831 4.9948 5.4566 13 1 1.3119 3.5021 6.3393 14 6 1.7937 0.0498 2.4116 15 8 1.8706 -0.5227 3.4781 16 6 1.9954 -0.7448 1.1519 17 6 3.4901 -1.0080 0.9459 18 6 4.0213 -1.8401 2.1153 19 7 3.2881 -3.1103 2.1871 20 6 3.8627 -3.9927 3.2113 21 6 2.9491 -5.1712 3.4290 22 6 3.0129 -6.3266 2.7655 23 6 2.0675 -7.2663 3.1382 24 6 1.2360 -6.8744 4.1049 25 16 1.6358 -5.2339 4.5973 26 6 1.8573 -2.8856 2.4286 27 6 1.2623 -2.0844 1.2683 28 1 -0.3634 0.4683 0.9147 29 1 -0.3633 0.5580 -0.8630 30 1 -0.3634 -1.0263 -0.0518 31 1 1.7284 1.8682 -0.9340 32 1 3.0806 1.3498 0.1054 33 1 0.3242 2.3074 0.9844 34 1 1.8889 3.0944 1.2901 35 1 -0.5663 4.4113 2.7388 36 1 4.0243 -0.0589 0.9021 37 1 3.6385 -1.5535 0.0139 38 1 3.8841 -1.2885 3.0453 39 1 5.0821 -2.0411 1.9656 40 1 3.9734 -3.4415 4.1452 41 1 4.8391 -4.3462 2.8802 42 1 3.7467 -6.5145 1.9955 43 1 2.0079 -8.2433 2.6816 44 1 0.4415 -7.4741 4.5238 45 1 1.3469 -3.8456 2.5064 46 1 1.7286 -2.3298 3.3574 47 1 0.2035 -1.9050 1.4550 48 1 1.3792 -2.6452 0.3410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096050082.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:23 Heat of formation + Delta-G solvation = 50.878701 kcal Electronic energy + Delta-G solvation = -30743.739736 eV Core-core repulsion = 26926.707520 eV Total energy + Delta-G solvation = -3817.032216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.69593 -38.34423 -37.11560 -36.27490 -34.78830 -32.39343 -31.44116 -30.51843 -29.61120 -28.37409 -26.45231 -25.29004 -24.89863 -23.44097 -22.21542 -21.96108 -21.43391 -20.35566 -18.98068 -17.75078 -17.10147 -16.70067 -16.28626 -15.70935 -15.38447 -15.01648 -14.86728 -14.47454 -14.40394 -14.16122 -13.97798 -13.77706 -13.22429 -12.87368 -12.77264 -12.56665 -12.46168 -12.35376 -12.11528 -11.84030 -11.67773 -11.57145 -11.43977 -11.34196 -11.21081 -11.02388 -10.92847 -10.62200 -10.59102 -10.52801 -10.40965 -10.25063 -10.17354 -9.80330 -9.10867 -8.84131 -8.65669 -8.32693 -7.83637 -7.71636 -7.31586 -6.32358 -3.94928 1.03790 1.70129 2.09492 2.78680 3.10487 3.20824 3.26182 3.82979 4.02733 4.29931 4.38539 4.79866 4.83526 5.01642 5.06852 5.20471 5.26543 5.33266 5.46230 5.54166 5.62634 5.70138 5.73491 5.80070 5.82953 5.89866 5.95052 6.00046 6.03383 6.14562 6.17432 6.20746 6.27420 6.33152 6.36522 6.38137 6.41660 6.51476 6.53881 6.60922 6.74289 6.89897 7.19502 7.40101 7.43470 7.45580 7.52358 7.53106 8.12752 8.42054 9.14909 9.42038 9.93004 10.64139 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.014367 B = 0.003581 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.493760 B = 7817.229668 C = 8741.340397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.525 5.525 3 C 0.024 3.976 4 C 0.099 3.901 5 N -0.433 5.433 6 C -0.311 4.311 7 H 0.100 0.900 8 C 0.033 3.967 9 N -0.880 5.880 10 Si 0.924 3.076 11 H -0.278 1.278 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.427 3.573 15 O -0.585 6.585 16 C 0.105 3.895 17 C -0.087 4.087 18 C 0.052 3.948 19 N -0.526 5.526 20 C 0.125 3.875 21 C -0.162 4.162 22 C -0.130 4.130 23 C -0.136 4.136 24 C -0.224 4.224 25 S 0.107 5.893 26 C 0.026 3.974 27 C -0.084 4.084 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.267 0.733 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.088 0.912 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.160 0.840 45 H 0.064 0.936 46 H 0.095 0.905 47 H 0.064 0.936 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.487 -13.329 -4.145 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.249 5.249 3 C -0.105 4.105 4 C -0.026 4.026 5 N -0.150 5.150 6 C -0.439 4.439 7 H 0.118 0.882 8 C -0.170 4.170 9 N -0.519 5.519 10 Si 0.750 3.250 11 H -0.204 1.204 12 H -0.210 1.210 13 H -0.194 1.194 14 C 0.215 3.785 15 O -0.471 6.471 16 C 0.011 3.989 17 C -0.125 4.125 18 C -0.076 4.076 19 N -0.251 5.251 20 C -0.005 4.005 21 C -0.279 4.279 22 C -0.161 4.161 23 C -0.167 4.167 24 C -0.360 4.360 25 S 0.371 5.629 26 C -0.101 4.101 27 C -0.122 4.122 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.106 0.894 42 H 0.157 0.843 43 H 0.153 0.847 44 H 0.177 0.823 45 H 0.082 0.918 46 H 0.112 0.888 47 H 0.082 0.918 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.994 -12.861 -3.502 13.915 hybrid contribution 0.026 0.640 0.961 1.155 sum 4.020 -12.221 -2.541 13.114 Atomic orbital electron populations 1.22491 0.87690 1.01720 1.01587 1.62735 1.08203 1.13579 1.40362 1.22803 0.99993 0.88721 0.98975 1.21971 1.03141 0.94313 0.83179 1.43259 1.59769 1.05596 1.06384 1.19710 1.33069 1.03156 0.87922 0.88230 1.25299 0.94614 0.98578 0.98555 1.69970 1.25761 1.23214 1.32960 0.85946 0.77654 0.79874 0.81484 1.20432 1.20952 1.19372 1.20254 0.84631 0.82659 0.90987 1.90316 1.57373 1.67262 1.32141 1.21173 0.96249 0.94044 0.87395 1.21440 0.93025 0.99213 0.98847 1.22123 0.96644 0.89600 0.99229 1.62232 1.03769 1.13983 1.45096 1.20548 0.95440 0.89898 0.94587 1.24437 1.01943 0.99722 1.01837 1.20072 1.01416 0.92840 1.01800 1.20138 0.96573 1.01026 0.98981 1.25652 1.06084 0.99578 1.04681 1.84722 1.28679 1.10869 1.38668 1.22789 0.87048 0.99430 1.00868 1.21444 0.98462 0.93269 0.99035 0.93719 0.91719 0.91565 0.89874 0.90965 0.89023 0.91665 0.92258 0.91785 0.90310 0.92482 0.91531 0.93722 0.89370 0.84326 0.84667 0.82278 0.91768 0.88752 0.91792 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 8.08 60.06 0.49 0.72 16 2 N -0.53 -9.29 4.89 -228.31 -1.12 -10.41 16 3 C 0.02 0.42 5.96 -3.68 -0.02 0.39 16 4 C 0.10 2.17 3.98 -4.31 -0.02 2.15 16 5 N -0.43 -10.77 2.79 -115.63 -0.32 -11.10 16 6 C -0.31 -8.51 9.12 -14.93 -0.14 -8.65 16 7 H 0.10 2.89 7.26 -52.49 -0.38 2.51 16 8 C 0.03 0.86 5.04 -17.47 -0.09 0.77 16 9 N -0.88 -22.98 10.60 55.50 0.59 -22.39 16 10 Si 0.92 20.62 29.58 -169.99 -5.03 15.59 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 14 C 0.43 10.03 5.37 -11.66 -0.06 9.97 16 15 O -0.59 -15.16 11.01 5.55 0.06 -15.10 16 16 C 0.10 1.97 0.44 -132.78 -0.06 1.92 16 17 C -0.09 -1.46 4.83 -26.63 -0.13 -1.59 16 18 C 0.05 0.87 5.17 -3.84 -0.02 0.85 16 19 N -0.53 -8.40 4.80 -236.13 -1.13 -9.53 16 20 C 0.12 1.75 5.77 -4.98 -0.03 1.73 16 21 C -0.16 -2.18 4.43 -36.00 -0.16 -2.34 16 22 C -0.13 -1.56 10.05 -41.21 -0.41 -1.97 16 23 C -0.14 -1.48 10.18 -41.21 -0.42 -1.90 16 24 C -0.22 -2.51 11.23 29.04 0.33 -2.18 16 25 S 0.11 1.44 21.73 -107.50 -2.34 -0.90 16 26 C 0.03 0.47 4.43 -3.84 -0.02 0.45 16 27 C -0.08 -1.50 4.03 -26.63 -0.11 -1.60 16 28 H 0.04 0.93 5.96 -51.93 -0.31 0.63 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.05 6.25 -51.93 -0.32 0.73 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.07 1.23 6.28 -51.93 -0.33 0.91 16 33 H 0.09 2.17 5.60 -51.93 -0.29 1.88 16 34 H 0.06 1.50 7.64 -51.93 -0.40 1.11 16 35 H 0.27 6.63 8.31 -40.82 -0.34 6.30 16 36 H 0.06 1.08 6.57 -51.93 -0.34 0.74 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.14 6.21 -51.93 -0.32 0.82 16 39 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 40 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.14 1.45 8.06 -52.48 -0.42 1.02 16 43 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 44 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 45 H 0.06 1.10 5.53 -51.93 -0.29 0.81 16 46 H 0.09 2.03 5.03 -51.93 -0.26 1.77 16 47 H 0.06 1.19 6.49 -51.93 -0.34 0.85 16 48 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 363.04 15.07 5.47 5.47 Total: -1.00 -29.06 363.04 -11.62 -40.68 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -6.94 Total: 8.97 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -0.87 Total: -1.29 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -1.98 Total: -53.42 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.06 Total: -15.10 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.34 Total: -0.90 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.06 -11.62 -40.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096050082.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.559 kcal (2) G-P(sol) polarization free energy of solvation -29.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds