Wall clock time and date at job start Tue Mar 31 2020 06:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47192 * 110.99502 * 2 1 4 4 C 1.52967 * 108.73455 * 167.60545 * 3 2 1 5 5 N 1.46002 * 110.05569 * 50.20610 * 4 3 2 6 6 C 1.37101 * 118.52843 * 161.91905 * 5 4 3 7 7 H 1.08002 * 119.99917 * 201.35931 * 6 5 4 8 8 C 1.38948 * 120.00161 * 21.34834 * 6 5 4 9 9 N 1.31413 * 119.99841 * 16.35955 * 8 6 5 10 10 Si 1.86794 * 120.00286 * 196.36075 * 8 6 5 11 11 H 1.48501 * 109.47196 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47426 * 119.99903 * 10 8 6 13 13 H 1.48500 * 109.47330 * 240.00387 * 10 8 6 14 14 C 1.33706 * 122.94558 * 341.93161 * 5 4 3 15 15 O 1.21298 * 118.62829 * 181.73832 * 14 5 4 16 16 C 1.46926 * 111.00166 * 237.13613 * 2 1 3 17 17 C 1.53163 * 109.32978 * 53.51063 * 16 2 1 18 18 C 1.53041 * 109.24412 * 182.65307 * 17 16 2 19 19 N 1.46834 * 109.52335 * 59.22996 * 18 17 16 20 20 C 1.46904 * 110.99954 * 174.18830 * 19 18 17 21 21 C 1.50694 * 109.47223 * 294.24418 * 20 19 18 22 22 C 1.38431 * 122.54060 * 90.00019 * 21 20 19 23 23 C 1.33386 * 114.92360 * 179.97438 * 22 21 20 24 24 S 1.75880 * 109.59182 * 0.02562 * 23 22 21 25 25 C 1.33381 * 122.54304 * 269.70755 * 21 20 19 26 26 C 1.46842 * 111.22615 * 298.30258 * 19 18 17 27 27 C 1.53048 * 109.52404 * 61.69204 * 26 19 18 28 28 H 1.09006 * 109.47065 * 182.86815 * 1 2 3 29 29 H 1.09001 * 109.47800 * 62.86747 * 1 2 3 30 30 H 1.08996 * 109.47615 * 302.86513 * 1 2 3 31 31 H 1.08996 * 109.59787 * 287.36654 * 3 2 1 32 32 H 1.09002 * 109.59491 * 47.82251 * 3 2 1 33 33 H 1.08998 * 109.35745 * 290.02620 * 4 3 2 34 34 H 1.09006 * 109.37826 * 170.39128 * 4 3 2 35 35 H 0.96997 * 120.00148 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.50869 * 302.57994 * 17 16 2 37 37 H 1.08996 * 109.51062 * 62.71885 * 17 16 2 38 38 H 1.09005 * 109.45822 * 299.21932 * 18 17 16 39 39 H 1.08997 * 109.46317 * 179.25046 * 18 17 16 40 40 H 1.09002 * 109.47127 * 54.24448 * 20 19 18 41 41 H 1.09003 * 109.47054 * 174.24256 * 20 19 18 42 42 H 1.08003 * 122.53613 * 359.95026 * 22 21 20 43 43 H 1.07998 * 125.20321 * 179.97438 * 23 22 21 44 44 H 1.07998 * 125.20173 * 0.02656 * 25 21 20 45 45 H 1.08999 * 109.46433 * 301.67340 * 26 19 18 46 46 H 1.08998 * 109.46589 * 181.70300 * 26 19 18 47 47 H 1.08996 * 109.50502 * 180.84857 * 27 26 19 48 48 H 1.08995 * 109.50739 * 60.71389 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9964 1.3742 0.0000 4 6 3.4933 1.3260 0.3109 5 7 4.1537 0.3544 -0.5560 6 6 5.5150 0.4262 -0.7023 7 1 5.9899 -0.0202 -1.5635 8 6 6.2837 1.0736 0.2573 9 7 5.7758 1.3317 1.4415 10 14 8.0390 1.5770 -0.1360 11 1 8.3693 1.1756 -1.5271 12 1 8.1737 3.0498 -0.0011 13 1 8.9695 0.9063 0.8073 14 6 3.4904 -0.6022 -1.2138 15 8 4.1216 -1.3883 -1.8883 16 6 1.9956 -0.7443 -1.1521 17 6 1.3749 -0.1923 -2.4390 18 6 1.8736 -1.0117 -3.6314 19 7 1.4977 -2.4196 -3.4510 20 6 1.8388 -3.2121 -4.6399 21 6 0.9986 -2.7569 -5.8051 22 6 1.4024 -1.7511 -6.6663 23 6 0.5414 -1.4703 -7.6456 24 16 -0.8696 -2.5111 -7.5068 25 6 -0.1880 -3.2963 -6.0882 26 6 2.1178 -2.9852 -2.2460 27 6 1.6263 -2.2240 -1.0125 28 1 -0.3633 -1.0264 0.0514 29 1 -0.3635 0.4686 -0.9145 30 1 -0.3634 0.5576 0.8631 31 1 1.8412 1.8253 -0.9800 32 1 1.4836 1.9625 0.7610 33 1 3.6369 1.0379 1.3523 34 1 3.9287 2.3117 0.1469 35 1 6.3124 1.7832 2.1115 36 1 0.2888 -0.2620 -2.3782 37 1 1.6669 0.8501 -2.5659 38 1 2.9586 -0.9313 -3.6989 39 1 1.4236 -0.6302 -4.5479 40 1 2.8938 -3.0754 -4.8774 41 1 1.6447 -4.2663 -4.4419 42 1 2.3432 -1.2328 -6.5536 43 1 0.6879 -0.7184 -8.4068 44 1 -0.6593 -4.0918 -5.5301 45 1 3.2016 -2.8965 -2.3195 46 1 1.8448 -4.0366 -2.1564 47 1 2.0982 -2.6342 -0.1198 48 1 0.5439 -2.3230 -0.9310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096050083.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:26 Heat of formation + Delta-G solvation = 48.871631 kcal Electronic energy + Delta-G solvation = -30563.138240 eV Core-core repulsion = 26746.018991 eV Total energy + Delta-G solvation = -3817.119249 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.60061 -38.67715 -36.94086 -36.39461 -34.64022 -32.00191 -31.28373 -30.47422 -29.68587 -28.72461 -26.90109 -25.18097 -24.72956 -23.36913 -22.85029 -21.72921 -21.33588 -20.12739 -18.74695 -17.75735 -17.55612 -16.74054 -16.21356 -15.76958 -15.43585 -14.96364 -14.81350 -14.52108 -14.26737 -14.04975 -13.80521 -13.66133 -13.22088 -13.00661 -12.97305 -12.71400 -12.61896 -12.54232 -12.11365 -12.02322 -11.77882 -11.68187 -11.44468 -11.26640 -11.16498 -11.04244 -10.79497 -10.70927 -10.64379 -10.49062 -10.36239 -10.20855 -10.18828 -9.98086 -9.02137 -8.81227 -8.51223 -8.32237 -7.87242 -7.65996 -7.49259 -6.27991 -3.88275 1.00223 1.64096 1.95052 2.67765 3.13472 3.24729 3.31259 3.85331 4.10260 4.29448 4.41945 4.83417 4.91339 5.01831 5.07175 5.15759 5.26185 5.34545 5.40387 5.46166 5.57117 5.60106 5.61325 5.73995 5.81483 5.83924 5.85522 5.91024 5.96173 6.03066 6.04788 6.11174 6.23407 6.26306 6.31503 6.35399 6.39018 6.47943 6.55970 6.60970 6.80259 6.92228 7.35826 7.36896 7.44170 7.48560 7.51741 7.60415 8.18649 8.48563 9.20370 9.49301 10.00742 10.70595 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.003221 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.514116 B = 8690.540765 C = 9594.308033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.524 5.524 3 C 0.026 3.974 4 C 0.140 3.860 5 N -0.428 5.428 6 C -0.310 4.310 7 H 0.101 0.899 8 C 0.032 3.968 9 N -0.877 5.877 10 Si 0.923 3.077 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.282 1.282 14 C 0.462 3.538 15 O -0.587 6.587 16 C 0.107 3.893 17 C -0.131 4.131 18 C 0.057 3.943 19 N -0.528 5.528 20 C 0.113 3.887 21 C -0.088 4.088 22 C -0.124 4.124 23 C -0.215 4.215 24 S 0.071 5.929 25 C -0.191 4.191 26 C 0.032 3.968 27 C -0.079 4.079 28 H 0.069 0.931 29 H 0.028 0.972 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.267 0.733 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.078 0.922 42 H 0.139 0.861 43 H 0.161 0.839 44 H 0.163 0.837 45 H 0.097 0.903 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.083 -3.493 -10.184 16.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.248 5.248 3 C -0.102 4.102 4 C 0.016 3.984 5 N -0.145 5.145 6 C -0.438 4.438 7 H 0.118 0.882 8 C -0.172 4.172 9 N -0.516 5.516 10 Si 0.750 3.250 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.208 1.208 14 C 0.249 3.751 15 O -0.474 6.474 16 C 0.014 3.986 17 C -0.171 4.171 18 C -0.072 4.072 19 N -0.253 5.253 20 C -0.017 4.017 21 C -0.100 4.100 22 C -0.155 4.155 23 C -0.350 4.350 24 S 0.334 5.666 25 C -0.327 4.327 26 C -0.096 4.096 27 C -0.117 4.117 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.156 0.844 43 H 0.179 0.821 44 H 0.180 0.820 45 H 0.114 0.886 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.385 -4.149 -10.610 18.350 hybrid contribution 2.516 1.195 0.078 2.787 sum -11.868 -2.954 -10.533 16.141 Atomic orbital electron populations 1.22478 0.88260 1.02101 1.00124 1.62695 1.07228 1.13987 1.40861 1.22807 0.98092 0.89243 1.00049 1.21405 0.86586 0.93099 0.97305 1.43199 1.07008 1.24908 1.39347 1.19730 0.81283 1.35508 1.07309 0.88160 1.25317 0.99964 0.97719 0.94157 1.70004 1.37766 1.40749 1.03085 0.85918 0.82141 0.78130 0.78845 1.19308 1.20686 1.20763 1.19163 0.87709 0.82722 0.85475 1.90320 1.67634 1.43318 1.46091 1.21158 0.93606 0.95286 0.88554 1.22095 1.00789 0.98988 0.95243 1.22061 1.00064 0.87979 0.97053 1.62058 1.59177 1.02120 1.01931 1.20665 0.95962 0.97469 0.87610 1.18890 0.95847 0.97371 0.97922 1.20202 1.01312 0.98897 0.95067 1.25504 0.98153 1.06271 1.05066 1.84150 1.22224 1.32641 1.27617 1.25398 0.99311 1.06640 1.01385 1.22623 1.02114 0.96462 0.88371 1.21314 1.00327 0.92177 0.97897 0.91265 0.95398 0.91757 0.94915 0.90117 0.88749 0.91671 0.92303 0.90842 0.91980 0.92523 0.91619 0.93632 0.90316 0.84363 0.82137 0.81963 0.88563 0.92294 0.91093 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.74 60.06 0.53 0.78 16 2 N -0.52 -9.34 4.69 -228.31 -1.07 -10.41 16 3 C 0.03 0.47 5.49 -3.68 -0.02 0.45 16 4 C 0.14 3.16 4.93 -4.33 -0.02 3.13 16 5 N -0.43 -10.89 2.98 -115.65 -0.34 -11.23 16 6 C -0.31 -8.55 9.13 -14.93 -0.14 -8.68 16 7 H 0.10 2.90 7.26 -52.49 -0.38 2.52 16 8 C 0.03 0.83 5.04 -17.47 -0.09 0.75 16 9 N -0.88 -23.17 10.57 55.50 0.59 -22.58 16 10 Si 0.92 20.59 29.58 -169.99 -5.03 15.56 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 C 0.46 11.00 6.02 -11.66 -0.07 10.93 16 15 O -0.59 -15.17 11.03 5.54 0.06 -15.11 16 16 C 0.11 2.03 0.44 -132.78 -0.06 1.97 16 17 C -0.13 -2.24 4.13 -26.63 -0.11 -2.35 16 18 C 0.06 0.96 4.96 -3.84 -0.02 0.94 16 19 N -0.53 -8.27 4.65 -236.12 -1.10 -9.36 16 20 C 0.11 1.56 5.23 -4.98 -0.03 1.53 16 21 C -0.09 -1.11 4.75 -106.25 -0.50 -1.61 16 22 C -0.12 -1.50 8.26 -41.21 -0.34 -1.84 16 23 C -0.21 -2.28 11.23 29.04 0.33 -1.96 16 24 S 0.07 0.72 23.34 -107.50 -2.51 -1.79 16 25 C -0.19 -2.16 10.98 29.03 0.32 -1.84 16 26 C 0.03 0.54 5.19 -3.83 -0.02 0.52 16 27 C -0.08 -1.38 4.82 -26.63 -0.13 -1.51 16 28 H 0.07 0.92 6.41 -51.93 -0.33 0.59 16 29 H 0.03 0.37 6.14 -51.93 -0.32 0.05 16 30 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 31 H 0.03 0.58 6.27 -51.93 -0.33 0.25 16 32 H 0.08 1.25 8.00 -51.93 -0.42 0.84 16 33 H 0.09 2.34 6.80 -51.93 -0.35 1.99 16 34 H 0.06 1.51 7.63 -51.93 -0.40 1.11 16 35 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 36 H 0.07 1.16 6.16 -51.93 -0.32 0.84 16 37 H 0.06 1.10 6.56 -51.93 -0.34 0.75 16 38 H 0.06 1.14 6.21 -51.93 -0.32 0.82 16 39 H 0.07 1.03 5.86 -51.93 -0.30 0.73 16 40 H 0.05 0.68 8.11 -51.93 -0.42 0.25 16 41 H 0.08 0.97 7.96 -51.93 -0.41 0.56 16 42 H 0.14 1.66 8.03 -52.48 -0.42 1.23 16 43 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.10 2.00 5.04 -51.93 -0.26 1.73 16 46 H 0.06 0.89 8.02 -51.93 -0.42 0.47 16 47 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 48 H 0.06 1.02 6.43 -51.93 -0.33 0.68 16 LS Contribution 365.02 15.07 5.50 5.50 Total: -1.00 -29.11 365.02 -11.18 -40.29 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.90 Total: 7.93 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -0.37 Total: 1.21 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -1.93 Total: -53.59 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.06 Total: -15.11 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.79 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.11 -11.18 -40.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096050083.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.161 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds