Wall clock time and date at job start Tue Mar 31 2020 05:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34951 * 126.03945 * 2 1 4 4 C 1.35309 * 107.74801 * 179.84130 * 3 2 1 5 5 C 1.50702 * 126.04156 * 180.15992 * 4 3 2 6 6 N 1.46899 * 109.47508 * 270.28481 * 5 4 3 7 7 C 1.46843 * 110.99912 * 45.75807 * 6 5 4 8 8 C 1.53036 * 109.53161 * 185.80702 * 7 6 5 9 9 C 1.53145 * 109.25648 * 300.79136 * 8 7 6 10 10 C 1.53159 * 109.09631 * 57.76422 * 9 8 7 11 11 C 1.46837 * 111.00266 * 170.00044 * 6 5 4 12 12 C 1.50287 * 109.57199 * 297.84037 * 9 8 7 13 13 O 1.21293 * 118.63278 * 42.39937 * 12 9 8 14 14 N 1.33714 * 122.73988 * 222.41414 * 12 9 8 15 15 C 1.37100 * 118.52505 * 181.76496 * 14 12 9 16 16 H 1.07998 * 120.00108 * 21.34023 * 15 14 12 17 17 C 1.38948 * 119.99666 * 201.33254 * 15 14 12 18 18 N 1.31410 * 120.00184 * 16.36413 * 17 15 14 19 19 Si 1.86799 * 120.00022 * 196.35891 * 17 15 14 20 20 H 1.48503 * 109.47059 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47497 * 120.00181 * 19 17 15 22 22 H 1.48502 * 109.47374 * 240.00441 * 19 17 15 23 23 C 1.46005 * 122.94269 * 1.74532 * 14 12 9 24 24 C 1.52973 * 110.05840 * 341.91152 * 23 14 12 25 25 N 1.46933 * 109.36296 * 177.29124 * 9 8 7 26 26 C 1.46900 * 110.99943 * 47.44779 * 25 9 8 27 27 C 1.39871 * 107.92224 * 0.42119 * 4 3 2 28 28 N 1.30840 * 108.19941 * 359.73816 * 27 4 3 29 29 H 1.08998 * 109.47094 * 269.72096 * 1 2 3 30 30 H 1.08999 * 109.46672 * 29.71336 * 1 2 3 31 31 H 1.08994 * 109.47217 * 149.71749 * 1 2 3 32 32 H 1.08005 * 126.12558 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.47110 * 30.28226 * 5 4 3 34 34 H 1.08999 * 109.47210 * 150.27725 * 5 4 3 35 35 H 1.09004 * 109.46121 * 305.82899 * 7 6 5 36 36 H 1.09001 * 109.46137 * 65.78915 * 7 6 5 37 37 H 1.09007 * 109.50607 * 180.85942 * 8 7 6 38 38 H 1.08998 * 109.51009 * 60.72996 * 8 7 6 39 39 H 1.09000 * 109.50699 * 182.28742 * 10 9 8 40 40 H 1.09000 * 109.50701 * 62.15396 * 10 9 8 41 41 H 1.09006 * 109.46136 * 294.19020 * 11 6 5 42 42 H 1.08989 * 109.46497 * 54.16550 * 11 6 5 43 43 H 0.97001 * 120.00545 * 179.97438 * 18 17 15 44 44 H 1.09007 * 109.37084 * 102.09130 * 23 14 12 45 45 H 1.08999 * 109.37228 * 221.72665 * 23 14 12 46 46 H 1.09003 * 109.59688 * 169.98762 * 24 23 14 47 47 H 1.08997 * 109.59321 * 290.44533 * 24 23 14 48 48 H 1.09002 * 109.46743 * 59.99927 * 26 25 9 49 49 H 1.08993 * 109.47274 * 179.97438 * 26 25 9 50 50 H 1.09001 * 109.47465 * 300.00033 * 26 25 9 51 51 H 1.07993 * 125.89870 * 179.72145 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6666 0.0036 5 6 4.7680 1.5453 0.0083 6 7 5.1662 1.8378 -1.3751 7 6 4.0037 2.2163 -2.1885 8 6 4.4306 2.3724 -3.6498 9 6 5.5164 3.4480 -3.7467 10 6 6.6961 3.0510 -2.8542 11 6 6.2040 2.8759 -1.4157 12 6 4.9607 4.7670 -3.2883 13 8 4.2564 4.7894 -2.3010 14 7 5.2101 5.9168 -3.9235 15 6 4.6885 7.0756 -3.4089 16 1 4.3986 7.1225 -2.3697 17 6 4.5331 8.1898 -4.2246 18 7 4.5736 8.0582 -5.5314 19 14 4.2663 9.8746 -3.4634 20 1 4.2617 9.7540 -1.9833 21 1 5.3616 10.7859 -3.8818 22 1 2.9641 10.4235 -3.9197 23 6 6.0133 5.9936 -5.1404 24 6 6.8529 4.7244 -5.2958 25 7 5.9740 3.5542 -5.1388 26 6 4.8348 3.6236 -6.0637 27 6 3.5347 -0.7321 -0.0040 28 7 2.2892 -1.1327 -0.0061 29 1 -0.3633 -0.0050 1.0276 30 1 -0.3632 0.8926 -0.5094 31 1 -0.3633 -0.8874 -0.5182 32 1 1.9282 2.1194 -0.0004 33 1 4.5441 2.4776 0.5267 34 1 5.5820 1.0316 0.5198 35 1 3.2405 1.4417 -2.1137 36 1 3.5987 3.1610 -1.8256 37 1 3.5705 2.6682 -4.2506 38 1 4.8234 1.4244 -4.0174 39 1 7.4558 3.8319 -2.8865 40 1 7.1220 2.1129 -3.2100 41 1 5.7896 3.8179 -1.0565 42 1 7.0384 2.5803 -0.7799 43 1 4.4647 8.8359 -6.1009 44 1 5.3544 6.0991 -6.0024 45 1 6.6733 6.8592 -5.0840 46 1 7.3107 4.7077 -6.2849 47 1 7.6292 4.7038 -4.5309 48 1 4.2280 4.4977 -5.8276 49 1 5.2018 3.7021 -7.0870 50 1 4.2293 2.7229 -5.9626 51 1 4.4054 -1.3709 -0.0077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096050084.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:09 Heat of formation + Delta-G solvation = 98.422415 kcal Electronic energy + Delta-G solvation = -33144.178536 eV Core-core repulsion = 29081.892424 eV Total energy + Delta-G solvation = -4062.286113 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.24698 -40.57081 -37.55195 -36.26068 -34.87878 -33.36388 -32.13584 -31.41921 -30.49019 -29.78664 -28.46280 -27.45906 -25.91787 -25.28170 -24.29893 -22.57878 -22.00248 -21.42604 -21.04911 -20.33144 -19.81777 -17.73795 -16.80050 -16.64574 -16.28497 -15.68096 -15.24983 -15.04260 -14.83691 -14.55188 -14.43174 -14.20513 -14.14663 -13.97426 -13.73826 -13.19517 -13.01427 -12.81653 -12.67321 -12.52635 -12.34081 -12.14718 -11.97493 -11.69787 -11.62051 -11.40479 -11.37360 -11.16067 -11.00878 -10.88452 -10.61273 -10.51495 -10.51165 -10.34359 -10.22939 -10.12672 -9.76338 -9.34091 -9.10502 -8.78537 -8.36307 -7.74967 -7.69155 -7.26010 -6.32292 -3.94901 1.92254 2.54202 2.85368 3.08809 3.20185 3.26573 3.84080 4.03148 4.33310 4.46874 4.58090 4.85254 4.92822 5.00470 5.01768 5.13768 5.21043 5.25427 5.31264 5.37706 5.47495 5.57542 5.72018 5.80634 5.85376 5.87688 5.92149 5.92754 6.03070 6.06751 6.09264 6.17504 6.23851 6.28755 6.34389 6.40644 6.42460 6.45332 6.55121 6.67179 6.70467 6.76373 6.94832 7.02047 7.20567 7.45721 7.49549 7.52535 7.58957 7.64657 7.74350 8.12912 8.42234 9.14936 9.42565 9.93601 10.63964 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013539 B = 0.003440 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.615794 B = 8137.722437 C = 9018.255836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.380 5.380 3 C 0.063 3.937 4 C -0.225 4.225 5 C 0.134 3.866 6 N -0.528 5.528 7 C 0.036 3.964 8 C -0.084 4.084 9 C 0.105 3.895 10 C -0.087 4.087 11 C 0.053 3.947 12 C 0.429 3.571 13 O -0.586 6.586 14 N -0.434 5.434 15 C -0.309 4.309 16 H 0.100 0.900 17 C 0.032 3.968 18 N -0.880 5.880 19 Si 0.923 3.077 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.282 1.282 23 C 0.099 3.901 24 C 0.023 3.977 25 N -0.526 5.526 26 C 0.014 3.986 27 C 0.065 3.935 28 N -0.307 5.307 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.172 0.828 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.266 0.734 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.043 0.957 49 H 0.064 0.936 50 H 0.065 0.935 51 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.554 -11.708 4.794 12.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.162 5.162 3 C -0.084 4.084 4 C -0.236 4.236 5 C 0.006 3.994 6 N -0.253 5.253 7 C -0.092 4.092 8 C -0.123 4.123 9 C 0.012 3.988 10 C -0.126 4.126 11 C -0.075 4.075 12 C 0.216 3.784 13 O -0.471 6.471 14 N -0.151 5.151 15 C -0.437 4.437 16 H 0.118 0.882 17 C -0.171 4.171 18 N -0.520 5.520 19 Si 0.750 3.250 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.208 1.208 23 C -0.026 4.026 24 C -0.105 4.105 25 N -0.249 5.249 26 C -0.134 4.134 27 C -0.122 4.122 28 N -0.129 5.129 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.189 0.811 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.083 0.917 46 H 0.101 0.899 47 H 0.091 0.909 48 H 0.062 0.938 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.385 -13.402 4.751 14.287 hybrid contribution -0.374 3.259 0.425 3.308 sum -1.759 -10.143 5.176 11.522 Atomic orbital electron populations 1.21814 0.74513 1.04433 1.03085 1.48413 1.06463 1.03911 1.57413 1.22447 0.91088 0.93333 1.01534 1.19955 0.94103 0.94034 1.15529 1.20267 0.93005 0.96038 0.90134 1.62141 1.11296 1.42425 1.09481 1.22593 0.92333 1.01819 0.92430 1.21452 0.96644 0.97183 0.97026 1.21169 0.95573 0.93678 0.88358 1.21450 0.95861 1.01517 0.93765 1.22087 0.94393 0.94511 0.96513 1.20262 0.85301 0.85409 0.87400 1.90306 1.42240 1.85698 1.28904 1.43271 1.43095 1.05855 1.22917 1.19728 1.40245 0.87367 0.96401 0.88232 1.25299 0.96609 1.00214 0.94985 1.69981 1.48649 1.30515 1.02826 0.85918 0.77843 0.81739 0.79540 1.19293 1.20627 1.20813 1.21962 0.94634 0.95917 0.90047 1.22806 0.96206 0.89218 1.02283 1.62747 1.18315 1.39836 1.04021 1.22480 0.93431 1.01401 0.96116 1.23736 0.94916 0.94547 0.98954 1.77311 1.01784 1.08309 1.25448 0.91013 0.89486 0.89491 0.81116 0.94485 0.90574 0.92120 0.89328 0.92150 0.91113 0.91972 0.90385 0.92725 0.91681 0.92319 0.89075 0.91673 0.89916 0.90932 0.93792 0.91767 0.91621 0.80151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 11.47 59.85 0.69 1.52 16 2 N -0.38 -4.72 4.01 -68.16 -0.27 -4.99 16 3 C 0.06 0.81 9.74 -17.22 -0.17 0.65 16 4 C -0.22 -3.03 4.26 -105.05 -0.45 -3.47 16 5 C 0.13 1.86 5.76 -4.98 -0.03 1.83 16 6 N -0.53 -8.35 4.80 -236.12 -1.13 -9.48 16 7 C 0.04 0.62 4.48 -3.84 -0.02 0.61 16 8 C -0.08 -1.51 4.04 -26.64 -0.11 -1.61 16 9 C 0.11 1.98 0.44 -132.78 -0.06 1.92 16 10 C -0.09 -1.48 4.82 -26.63 -0.13 -1.61 16 11 C 0.05 0.88 5.17 -3.84 -0.02 0.86 16 12 C 0.43 9.97 5.36 -11.66 -0.06 9.91 16 13 O -0.59 -14.90 11.03 5.55 0.06 -14.84 16 14 N -0.43 -10.74 2.78 -115.65 -0.32 -11.06 16 15 C -0.31 -8.41 9.13 -14.93 -0.14 -8.55 16 16 H 0.10 2.86 7.26 -52.49 -0.38 2.48 16 17 C 0.03 0.83 5.04 -17.47 -0.09 0.74 16 18 N -0.88 -22.88 10.57 55.50 0.59 -22.29 16 19 Si 0.92 20.43 29.58 -169.99 -5.03 15.40 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 C 0.10 2.18 3.98 -4.32 -0.02 2.16 16 24 C 0.02 0.41 5.96 -3.68 -0.02 0.39 16 25 N -0.53 -9.33 4.89 -228.31 -1.12 -10.45 16 26 C 0.01 0.24 8.09 60.06 0.49 0.73 16 27 C 0.06 0.85 11.96 -17.36 -0.21 0.64 16 28 N -0.31 -4.31 12.58 30.62 0.39 -3.93 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.17 2.03 8.06 -52.48 -0.42 1.60 16 33 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.03 5.65 -51.93 -0.29 0.73 16 36 H 0.09 1.83 5.04 -51.93 -0.26 1.57 16 37 H 0.06 1.12 6.50 -51.93 -0.34 0.78 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.06 6.56 -51.93 -0.34 0.72 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.05 1.08 6.21 -51.93 -0.32 0.76 16 42 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 43 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 44 H 0.09 2.16 5.61 -51.92 -0.29 1.86 16 45 H 0.06 1.50 7.63 -51.93 -0.40 1.10 16 46 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 47 H 0.07 1.25 6.27 -51.93 -0.33 0.92 16 48 H 0.04 0.92 5.95 -51.93 -0.31 0.61 16 49 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.07 1.05 6.25 -51.93 -0.32 0.73 16 51 H 0.18 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 375.94 15.07 5.67 5.67 Total: -1.00 -30.87 375.94 -9.30 -40.17 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -7.79 Total: 9.09 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -0.34 Total: 6.72 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -1.87 Total: -62.20 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.06 Total: -14.84 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.87 -9.30 -40.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096050084.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.588 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds