Wall clock time and date at job start Tue Mar 31 2020 04:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34510 * 125.79290 * 2 1 4 4 C 1.41380 * 106.84337 * 179.74845 * 3 2 1 5 5 C 1.34512 * 106.83782 * 0.37244 * 4 3 2 6 6 C 1.50704 * 125.78848 * 179.88959 * 5 4 3 7 7 N 1.46898 * 109.47240 * 89.71371 * 6 5 4 8 8 C 1.46845 * 111.00269 * 170.00404 * 7 6 5 9 9 C 1.53029 * 109.52716 * 174.19449 * 8 7 6 10 10 C 1.53152 * 109.24710 * 59.22867 * 9 8 7 11 11 C 1.53163 * 109.08981 * 302.20174 * 10 9 8 12 12 C 1.46848 * 110.99844 * 45.75846 * 7 6 5 13 13 C 1.50286 * 109.55507 * 62.10800 * 10 9 8 14 14 O 1.21291 * 118.62250 * 282.92717 * 13 10 9 15 15 N 1.33702 * 122.76324 * 102.94576 * 13 10 9 16 16 C 1.37104 * 118.53738 * 181.69217 * 15 13 10 17 17 H 1.08004 * 119.99229 * 21.55485 * 16 15 13 18 18 C 1.38942 * 120.00424 * 201.55608 * 16 15 13 19 19 N 1.31407 * 120.00102 * 16.52677 * 18 16 15 20 20 Si 1.86804 * 119.99855 * 196.53748 * 18 16 15 21 21 H 1.48497 * 109.47075 * 94.97501 * 20 18 16 22 22 H 1.48501 * 109.46767 * 214.97337 * 20 18 16 23 23 H 1.48498 * 109.46913 * 334.96931 * 20 18 16 24 24 C 1.46012 * 122.93844 * 1.66896 * 15 13 10 25 25 C 1.52984 * 110.03348 * 341.89218 * 24 15 13 26 26 N 1.46923 * 109.35044 * 182.65403 * 10 9 8 27 27 C 1.46903 * 110.99874 * 166.67956 * 26 10 9 28 28 O 1.34300 * 108.42404 * 359.62367 * 5 4 3 29 29 H 1.09001 * 109.47292 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47209 * 300.00215 * 1 2 3 31 31 H 1.08997 * 109.47120 * 60.00327 * 1 2 3 32 32 H 1.08006 * 126.57525 * 359.97438 * 3 2 1 33 33 H 1.08000 * 126.58282 * 180.22888 * 4 3 2 34 34 H 1.09003 * 109.47044 * 329.71276 * 6 5 4 35 35 H 1.08998 * 109.47384 * 209.71717 * 6 5 4 36 36 H 1.08998 * 109.46151 * 54.16990 * 8 7 6 37 37 H 1.09006 * 109.45875 * 294.20526 * 8 7 6 38 38 H 1.08999 * 109.51125 * 179.16225 * 9 8 7 39 39 H 1.09004 * 109.51066 * 299.29936 * 9 8 7 40 40 H 1.08998 * 109.50801 * 177.73202 * 11 10 9 41 41 H 1.09000 * 109.50867 * 297.87650 * 11 10 9 42 42 H 1.09004 * 109.46226 * 65.80041 * 12 7 6 43 43 H 1.08994 * 109.46939 * 305.82777 * 12 7 6 44 44 H 0.97003 * 120.00053 * 179.97438 * 19 18 16 45 45 H 1.08995 * 109.37531 * 102.06102 * 24 15 13 46 46 H 1.08996 * 109.37886 * 221.72226 * 24 15 13 47 47 H 1.08999 * 109.59619 * 170.04711 * 25 24 15 48 48 H 1.09001 * 109.59421 * 290.50654 * 25 24 15 49 49 H 1.08994 * 109.47428 * 59.99872 * 27 26 10 50 50 H 1.09002 * 109.47004 * 179.97438 * 27 26 10 51 51 H 1.09007 * 109.47001 * 299.99391 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 0.0059 5 6 3.5813 -0.7122 0.0008 6 6 4.7705 -1.6380 0.0019 7 7 5.1560 -1.9384 1.3872 8 6 6.1527 -3.0158 1.4344 9 6 6.6364 -3.2025 2.8742 10 6 5.4414 -3.5486 3.7673 11 6 4.3986 -2.4315 3.6640 12 6 3.9790 -2.2670 2.2015 13 6 4.8341 -4.8466 3.3145 14 8 4.1327 -4.8459 2.3249 15 7 5.0342 -6.0020 3.9567 16 6 4.4663 -7.1413 3.4475 17 1 4.1802 -7.1833 2.4069 18 6 4.2589 -8.2417 4.2701 19 7 4.2946 -8.1017 5.5762 20 14 3.9294 -9.9202 3.5193 21 1 5.2029 -10.6778 3.4226 22 1 2.9732 -10.6665 4.3760 23 1 3.3500 -9.7504 2.1625 24 6 5.8309 -6.1050 5.1760 25 6 6.7223 -4.8707 5.3254 26 7 5.8927 -3.6659 5.1606 27 6 4.7506 -3.6823 6.0844 28 8 2.2924 -1.0895 0.0006 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.9666 2.1204 -0.0004 33 1 4.5213 1.2432 0.0110 34 1 5.6043 -1.1590 -0.5115 35 1 4.5110 -2.5636 -0.5119 36 1 6.9985 -2.7562 0.7978 37 1 5.7023 -3.9429 1.0795 38 1 7.3651 -4.0122 2.9113 39 1 7.0983 -2.2798 3.2256 40 1 3.5274 -2.6900 4.2659 41 1 4.8284 -1.4977 4.0266 42 1 3.5379 -3.1972 1.8434 43 1 3.2465 -1.4637 2.1220 44 1 4.1494 -8.8699 6.1505 45 1 5.1665 -6.1776 6.0370 46 1 6.4546 -6.9975 5.1262 47 1 7.1792 -4.8674 6.3150 48 1 7.4995 -4.8865 4.5614 49 1 4.1080 -4.5316 5.8525 50 1 5.1130 -3.7703 7.1086 51 1 4.1835 -2.7575 5.9774 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096050086.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:57 Heat of formation + Delta-G solvation = 27.139871 kcal Electronic energy + Delta-G solvation = -33182.281893 eV Core-core repulsion = 29084.611986 eV Total energy + Delta-G solvation = -4097.669907 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.52413 -40.66195 -37.66769 -36.27673 -34.88913 -33.07446 -32.74502 -31.62047 -30.97536 -30.51839 -28.59354 -27.84280 -25.72709 -25.28903 -24.04547 -22.65381 -22.05489 -21.58806 -21.43716 -20.32491 -19.88871 -17.76336 -16.83649 -16.64637 -16.33325 -15.97754 -15.38979 -15.07294 -14.86907 -14.55968 -14.47653 -14.43696 -13.99295 -13.82340 -13.42192 -13.32342 -13.05980 -12.98117 -12.69441 -12.60091 -12.44928 -12.20925 -12.15499 -11.87479 -11.70580 -11.61226 -11.49452 -11.34161 -11.20071 -11.02201 -10.93113 -10.63165 -10.52828 -10.41943 -10.25224 -10.17898 -9.81129 -9.75946 -9.10875 -8.84008 -8.25274 -7.84116 -7.71610 -7.32443 -6.32228 -3.94856 1.78691 2.68682 2.99225 3.10657 3.20906 3.26404 3.82979 4.02741 4.29254 4.37131 4.66977 4.82992 4.94281 5.01789 5.12612 5.19663 5.21725 5.26069 5.34840 5.43446 5.52892 5.54255 5.64411 5.70269 5.76778 5.82138 5.88652 5.90538 5.94598 5.98195 6.02574 6.09212 6.14545 6.20215 6.24040 6.27677 6.35828 6.36639 6.41353 6.51069 6.60408 6.63223 6.74167 6.90349 7.19506 7.29595 7.37321 7.41984 7.44408 7.50902 7.53285 8.12900 8.42223 9.15111 9.42085 9.93143 10.64308 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013419 B = 0.003474 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.061415 B = 8058.906045 C = 8951.286394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.019 4.019 3 C -0.216 4.216 4 C -0.196 4.196 5 C 0.001 3.999 6 C 0.134 3.866 7 N -0.527 5.527 8 C 0.052 3.948 9 C -0.087 4.087 10 C 0.105 3.895 11 C -0.084 4.084 12 C 0.034 3.966 13 C 0.427 3.573 14 O -0.585 6.585 15 N -0.433 5.433 16 C -0.311 4.311 17 H 0.100 0.900 18 C 0.033 3.967 19 N -0.880 5.880 20 Si 0.924 3.076 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C 0.099 3.901 25 C 0.023 3.977 26 N -0.525 5.525 27 C 0.013 3.987 28 O -0.171 6.171 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.059 0.941 44 H 0.267 0.733 45 H 0.092 0.908 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.044 0.956 50 H 0.064 0.936 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 13.904 -4.674 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.069 4.069 3 C -0.235 4.235 4 C -0.216 4.216 5 C -0.049 4.049 6 C 0.007 3.993 7 N -0.253 5.253 8 C -0.076 4.076 9 C -0.125 4.125 10 C 0.011 3.989 11 C -0.122 4.122 12 C -0.093 4.093 13 C 0.214 3.786 14 O -0.470 6.470 15 N -0.150 5.150 16 C -0.439 4.439 17 H 0.118 0.882 18 C -0.171 4.171 19 N -0.519 5.519 20 Si 0.751 3.249 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.194 1.194 24 C -0.026 4.026 25 C -0.105 4.105 26 N -0.249 5.249 27 C -0.135 4.135 28 O -0.068 6.068 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.110 0.890 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.091 0.909 49 H 0.063 0.937 50 H 0.083 0.917 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.014 14.274 -4.631 15.041 hybrid contribution -0.853 -2.166 -0.455 2.372 sum 0.162 12.108 -5.086 13.134 Atomic orbital electron populations 1.20280 0.85499 1.04030 1.03187 1.22401 0.93965 0.84371 1.06203 1.21499 0.92876 0.99099 1.10057 1.21478 0.97888 0.93731 1.08542 1.22212 0.82776 0.94546 1.05362 1.20546 0.90740 0.96228 0.91820 1.62293 1.13260 1.41802 1.07946 1.22130 0.94651 0.93791 0.96999 1.21441 0.95916 1.01791 0.93397 1.21169 0.95334 0.93853 0.88502 1.21449 0.97232 0.96971 0.96579 1.22629 0.91452 1.02484 0.92740 1.20253 0.85634 0.85185 0.87494 1.90327 1.42734 1.85183 1.28792 1.43262 1.42705 1.06357 1.22707 1.19715 1.38736 0.89119 0.96288 0.88230 1.25300 0.96519 1.00250 0.94982 1.69973 1.48299 1.30965 1.02691 0.85941 0.78161 0.81620 0.79210 1.20420 1.20953 1.19372 1.21971 0.94370 0.96248 0.90027 1.22811 0.96500 0.88885 1.02301 1.62744 1.20405 1.37920 1.03801 1.22492 0.93334 1.01537 0.96123 1.84060 1.16515 1.34951 1.71238 0.90586 0.89847 0.89991 0.83860 0.83599 0.88196 0.93083 0.91366 0.92338 0.91681 0.90246 0.91799 0.90951 0.88690 0.92292 0.92261 0.89022 0.91646 0.89851 0.90939 0.93727 0.91693 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.42 36.01 0.38 -0.30 16 2 C -0.02 -0.25 7.32 -35.63 -0.26 -0.51 16 3 C -0.22 -2.68 10.81 -39.70 -0.43 -3.11 16 4 C -0.20 -2.61 10.81 -39.70 -0.43 -3.04 16 5 C 0.00 0.02 5.00 -35.62 -0.18 -0.16 16 6 C 0.13 1.94 5.81 -4.97 -0.03 1.91 16 7 N -0.53 -8.59 4.80 -236.12 -1.13 -9.72 16 8 C 0.05 0.87 5.17 -3.84 -0.02 0.85 16 9 C -0.09 -1.47 4.82 -26.64 -0.13 -1.60 16 10 C 0.10 1.99 0.44 -132.78 -0.06 1.93 16 11 C -0.08 -1.53 4.03 -26.63 -0.11 -1.63 16 12 C 0.03 0.63 4.71 -3.83 -0.02 0.62 16 13 C 0.43 10.11 5.37 -11.66 -0.06 10.05 16 14 O -0.58 -15.36 11.02 5.55 0.06 -15.30 16 15 N -0.43 -10.84 2.79 -115.64 -0.32 -11.16 16 16 C -0.31 -8.56 9.12 -14.93 -0.14 -8.69 16 17 H 0.10 2.91 7.26 -52.48 -0.38 2.53 16 18 C 0.03 0.86 5.04 -17.47 -0.09 0.77 16 19 N -0.88 -23.05 10.60 55.49 0.59 -22.47 16 20 Si 0.92 20.69 29.58 -169.99 -5.03 15.66 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 24 C 0.10 2.17 3.98 -4.31 -0.02 2.16 16 25 C 0.02 0.42 5.96 -3.67 -0.02 0.39 16 26 N -0.53 -9.33 4.89 -228.28 -1.12 -10.45 16 27 C 0.01 0.23 8.08 60.07 0.49 0.72 16 28 O -0.17 -2.74 9.87 5.71 0.06 -2.68 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.14 1.40 8.06 -52.48 -0.42 0.98 16 33 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.07 0.95 8.12 -51.93 -0.42 0.52 16 37 H 0.06 1.17 6.21 -51.93 -0.32 0.85 16 38 H 0.06 1.09 6.57 -51.93 -0.34 0.75 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.21 6.49 -51.93 -0.34 0.87 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.10 2.13 5.03 -51.93 -0.26 1.87 16 43 H 0.06 1.08 6.03 -51.93 -0.31 0.77 16 44 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 45 H 0.09 2.18 5.60 -51.93 -0.29 1.89 16 46 H 0.07 1.51 7.65 -51.93 -0.40 1.11 16 47 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.07 1.24 6.28 -51.93 -0.33 0.91 16 49 H 0.04 0.94 5.96 -51.93 -0.31 0.63 16 50 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.07 1.06 6.25 -51.93 -0.32 0.74 16 LS Contribution 376.84 15.07 5.68 5.68 Total: -1.00 -30.39 376.84 -10.15 -40.53 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -7.81 Total: 9.55 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.12 Total: 0.36 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -1.98 Total: -53.80 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.12 Total: -17.98 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.39 -10.15 -40.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096050086.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.674 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds