Wall clock time and date at job start Tue Mar 31 2020 05:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29786 * 126.20759 * 2 1 4 4 N 1.39456 * 111.42650 * 180.25887 * 3 2 1 5 5 C 1.40047 * 124.94357 * 179.69994 * 4 3 2 6 6 C 1.38874 * 120.06482 * 179.74869 * 5 4 3 7 7 C 1.38120 * 119.92650 * 179.74730 * 6 5 4 8 8 C 1.38282 * 120.06518 * 0.54939 * 7 6 5 9 9 C 1.38289 * 120.14503 * 359.69918 * 8 7 6 10 10 C 1.38104 * 120.06634 * 0.02699 * 9 8 7 11 11 C 1.34857 * 110.11057 * 359.71987 * 4 3 2 12 12 O 1.21857 * 127.01125 * 180.02562 * 11 4 3 13 13 C 1.47023 * 126.20404 * 179.80086 * 2 1 3 14 14 C 1.38499 * 127.55107 * 0.02562 * 13 2 1 15 15 C 1.41813 * 119.99874 * 172.47109 * 14 13 2 16 16 C 1.40336 * 120.26237 * 322.22977 * 15 14 13 17 17 C 1.37576 * 119.85748 * 180.31967 * 16 15 14 18 18 C 1.38760 * 120.40621 * 359.68516 * 17 16 15 19 19 C 1.38019 * 120.54132 * 0.02562 * 18 17 16 20 20 C 1.38793 * 120.12381 * 0.02562 * 19 18 17 21 21 O 1.35407 * 120.20315 * 179.97438 * 20 19 18 22 22 C 1.34728 * 116.99868 * 5.60770 * 21 20 19 23 23 H 1.08001 * 119.99879 * 355.23632 * 22 21 20 24 24 C 1.38793 * 119.99923 * 174.95482 * 22 21 20 25 25 N 1.31454 * 120.00159 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00044 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46961 * 60.00440 * 26 24 22 28 28 H 1.48504 * 109.47189 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47488 * 300.00262 * 26 24 22 30 30 H 1.09005 * 109.46901 * 270.20155 * 1 2 3 31 31 H 1.08993 * 109.47023 * 30.19987 * 1 2 3 32 32 H 1.08993 * 109.47161 * 150.20244 * 1 2 3 33 33 H 1.08002 * 120.03906 * 359.97438 * 6 5 4 34 34 H 1.07992 * 119.96572 * 180.29468 * 7 6 5 35 35 H 1.08002 * 119.92485 * 179.72557 * 8 7 6 36 36 H 1.07998 * 119.96307 * 180.02562 * 9 8 7 37 37 H 1.08000 * 120.03076 * 179.97438 * 10 9 8 38 38 H 1.08001 * 120.00172 * 352.46840 * 14 13 2 39 39 H 1.07994 * 120.06723 * 0.02562 * 16 15 14 40 40 H 1.08001 * 119.79352 * 179.69752 * 17 16 15 41 41 H 1.08007 * 119.73079 * 180.02562 * 18 17 16 42 42 H 1.08009 * 119.94074 * 180.02562 * 19 18 17 43 43 H 0.97006 * 120.00098 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2737 1.0472 0.0000 4 7 3.6221 0.6914 -0.0059 5 6 4.6906 1.5968 -0.0134 6 6 5.9984 1.1296 -0.0135 7 6 7.0499 2.0250 -0.0262 8 6 6.8016 3.3853 -0.0272 9 6 5.5004 3.8537 -0.0219 10 6 4.4446 2.9635 -0.0149 11 6 3.7474 -0.6513 -0.0037 12 8 4.7844 -1.2913 -0.0070 13 6 2.3755 -1.1864 0.0041 14 6 1.9880 -2.5160 0.0083 15 6 2.9587 -3.5379 -0.1490 16 6 4.0378 -3.3590 -1.0283 17 6 4.9710 -4.3585 -1.1794 18 6 4.8560 -5.5410 -0.4626 19 6 3.8048 -5.7322 0.4111 20 6 2.8500 -4.7390 0.5800 21 8 1.8177 -4.9251 1.4363 22 6 1.8359 -6.0473 2.1816 23 1 2.6078 -6.7864 2.0259 24 6 0.8661 -6.2507 3.1534 25 7 -0.0705 -5.3488 3.3463 26 14 0.8908 -7.8070 4.1862 27 1 2.1708 -7.8836 4.9353 28 1 -0.2434 -7.7832 5.1445 29 1 0.7644 -8.9916 3.2998 30 1 -0.3633 0.0036 1.0277 31 1 -0.3633 0.8881 -0.5169 32 1 -0.3633 -0.8917 -0.5106 33 1 6.1930 0.0673 -0.0074 34 1 8.0671 1.6624 -0.0311 35 1 7.6256 4.0835 -0.0327 36 1 5.3098 4.9167 -0.0232 37 1 3.4287 3.3299 -0.0104 38 1 0.9467 -2.7747 0.1313 39 1 4.1327 -2.4407 -1.5886 40 1 5.7984 -4.2217 -1.8600 41 1 5.5952 -6.3183 -0.5893 42 1 3.7249 -6.6563 0.9645 43 1 -0.7486 -5.4911 4.0252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096193290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:20 Heat of formation + Delta-G solvation = 79.716121 kcal Electronic energy + Delta-G solvation = -29262.628317 eV Core-core repulsion = 25240.995451 eV Total energy + Delta-G solvation = -4021.632867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.126 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.21902 -39.44933 -38.67725 -37.15641 -36.61785 -34.33589 -32.79014 -32.44833 -30.85776 -30.29559 -29.35368 -28.65427 -27.40437 -25.70981 -24.92182 -22.82123 -22.42076 -21.68139 -21.08083 -19.47874 -19.13476 -18.31498 -17.56319 -17.11971 -16.18846 -15.72769 -15.39460 -15.31866 -14.79903 -14.69754 -14.33682 -14.31634 -13.99614 -13.91232 -13.62369 -13.41222 -13.28138 -13.21599 -12.96743 -12.69438 -12.42361 -12.34367 -11.99192 -11.88862 -11.67572 -11.53222 -11.13995 -11.13006 -10.98590 -10.85115 -10.70377 -10.64077 -10.23539 -9.75766 -9.22340 -9.19222 -9.07108 -8.90224 -7.96433 -7.63800 -7.31166 -6.82493 -4.34474 0.46203 1.29572 1.44969 2.10703 2.27283 2.58489 2.80415 2.95204 2.98094 2.99848 3.44088 3.69186 3.98530 4.23642 4.36241 4.64907 4.73614 4.91669 4.98856 5.00609 5.18218 5.24549 5.37804 5.48326 5.51115 5.53011 5.60030 5.62385 5.65013 5.79839 5.89400 5.92646 6.00557 6.08746 6.20941 6.32708 6.40730 6.45647 6.49509 6.58568 6.60440 6.65932 6.75950 6.85284 7.07073 7.10704 7.17048 7.19481 7.57429 7.62737 7.92106 8.28043 8.61716 9.24718 10.32999 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.002941 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.797327 B = 9517.639896 C =10459.703498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.157 3.843 3 N -0.278 5.278 4 N -0.414 5.414 5 C 0.189 3.811 6 C -0.157 4.157 7 C -0.094 4.094 8 C -0.151 4.151 9 C -0.100 4.100 10 C -0.140 4.140 11 C 0.529 3.471 12 O -0.496 6.496 13 C -0.325 4.325 14 C 0.163 3.837 15 C -0.214 4.214 16 C 0.023 3.977 17 C -0.226 4.226 18 C -0.036 4.036 19 C -0.243 4.243 20 C 0.186 3.814 21 O -0.151 6.151 22 C -0.390 4.390 23 H 0.100 0.900 24 C 0.045 3.955 25 N -0.842 5.842 26 Si 0.946 3.054 27 H -0.266 1.266 28 H -0.274 1.274 29 H -0.266 1.266 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.154 0.846 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.143 0.857 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.133 0.867 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.224 8.993 -6.594 11.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.027 4.027 3 N -0.088 5.088 4 N -0.221 5.221 5 C 0.095 3.905 6 C -0.177 4.177 7 C -0.113 4.113 8 C -0.170 4.170 9 C -0.119 4.119 10 C -0.161 4.161 11 C 0.324 3.676 12 O -0.373 6.373 13 C -0.332 4.332 14 C 0.140 3.860 15 C -0.216 4.216 16 C 0.005 3.995 17 C -0.245 4.245 18 C -0.055 4.055 19 C -0.262 4.262 20 C 0.128 3.872 21 O -0.050 6.050 22 C -0.465 4.465 23 H 0.117 0.883 24 C -0.163 4.163 25 N -0.474 5.474 26 Si 0.769 3.231 27 H -0.191 1.191 28 H -0.199 1.199 29 H -0.191 1.191 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.171 0.829 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.150 0.850 38 H 0.160 0.840 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.150 0.850 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.469 9.904 -6.342 12.581 hybrid contribution 0.161 -1.494 0.672 1.646 sum 4.630 8.410 -5.669 11.149 Atomic orbital electron populations 1.20375 0.85325 1.04025 1.04178 1.23945 0.96532 0.89307 0.92921 1.75928 0.86941 1.24422 1.21468 1.46518 1.03145 1.05625 1.66812 1.17641 0.85160 0.88745 0.98955 1.21569 0.90126 1.02795 1.03258 1.20978 0.98538 0.92891 0.98880 1.21091 0.96729 0.95584 1.03580 1.20937 0.92250 0.99188 0.99485 1.20845 1.00298 0.90848 1.04093 1.18906 0.90300 0.81352 0.77088 1.90791 1.33461 1.62956 1.50072 1.21230 0.93104 0.93785 1.25116 1.21745 0.99266 0.89258 0.75699 1.17077 1.01538 0.94285 1.08681 1.21060 0.89208 0.95958 0.93287 1.20541 1.01884 0.95691 1.06349 1.21038 0.95470 0.96196 0.92768 1.21092 0.98261 1.01269 1.05557 1.19507 0.86874 0.91309 0.89487 1.83772 1.36498 1.41244 1.43507 1.21522 1.14563 0.95631 1.14804 0.88288 1.25433 0.94737 0.99575 0.96575 1.69954 1.12772 1.33540 1.31100 0.85684 0.78797 0.79449 0.79124 1.19110 1.19905 1.19078 0.89117 0.90088 0.89496 0.82862 0.85678 0.86206 0.85829 0.84996 0.83991 0.86384 0.87116 0.86957 0.84974 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.36 36.01 0.37 -0.53 16 2 C 0.16 2.49 7.47 -79.90 -0.60 1.90 16 3 N -0.28 -4.80 11.47 35.02 0.40 -4.39 16 4 N -0.41 -7.72 3.74 -10.78 -0.04 -7.76 16 5 C 0.19 3.23 6.67 -83.64 -0.56 2.67 16 6 C -0.16 -2.54 9.36 -39.39 -0.37 -2.91 16 7 C -0.09 -1.22 10.04 -39.61 -0.40 -1.62 16 8 C -0.15 -1.74 10.04 -39.55 -0.40 -2.14 16 9 C -0.10 -1.20 10.04 -39.61 -0.40 -1.59 16 10 C -0.14 -2.05 9.63 -39.40 -0.38 -2.43 16 11 C 0.53 10.55 7.16 -12.56 -0.09 10.46 16 12 O -0.50 -10.51 11.18 5.05 0.06 -10.46 16 13 C -0.33 -5.96 6.04 -102.58 -0.62 -6.58 16 14 C 0.16 3.03 9.13 -38.12 -0.35 2.69 16 15 C -0.21 -4.35 5.37 -106.72 -0.57 -4.93 16 16 C 0.02 0.44 6.97 -39.03 -0.27 0.17 16 17 C -0.23 -3.99 10.02 -39.63 -0.40 -4.39 16 18 C -0.04 -0.63 10.03 -39.47 -0.40 -1.03 16 19 C -0.24 -4.88 9.15 -39.46 -0.36 -5.25 16 20 C 0.19 4.14 6.67 -38.36 -0.26 3.89 16 21 O -0.15 -3.80 9.18 1.38 0.01 -3.79 16 22 C -0.39 -9.75 9.49 30.94 0.29 -9.45 16 23 H 0.10 2.27 5.21 -52.49 -0.27 2.00 16 24 C 0.04 1.10 5.50 -17.51 -0.10 1.00 16 25 N -0.84 -22.00 13.67 55.49 0.76 -21.25 16 26 Si 0.95 18.50 29.55 -169.99 -5.02 13.47 16 27 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 28 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 29 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.15 2.74 5.37 -52.49 -0.28 2.46 16 34 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.13 1.85 7.64 -52.49 -0.40 1.45 16 38 H 0.14 2.41 7.97 -52.49 -0.42 2.00 16 39 H 0.12 2.21 6.06 -52.49 -0.32 1.89 16 40 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 41 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 42 H 0.13 2.57 5.64 -52.48 -0.30 2.28 16 43 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 370.08 15.07 5.58 5.58 Total: -1.00 -29.90 370.08 -8.60 -38.49 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -4.50 Total: 10.17 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -5.84 Total: -20.07 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 1.12 Total: -33.40 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.07 Total: -14.25 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.47 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.90 -8.60 -38.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096193290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.211 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds