Wall clock time and date at job start Tue Mar 31 2020 05:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35957 * 116.99799 * 2 1 4 4 C 1.37951 * 120.04926 * 0.02562 * 3 2 1 5 5 C 1.40366 * 119.68328 * 179.97438 * 4 3 2 6 6 C 1.46227 * 120.10483 * 179.97438 * 5 4 3 7 7 C 1.38230 * 120.00009 * 134.80164 * 6 5 4 8 8 C 1.47633 * 121.48455 * 350.51372 * 7 6 5 9 9 O 1.21649 * 120.91445 * 359.97438 * 8 7 6 10 10 N 1.34902 * 118.16400 * 179.75807 * 8 7 6 11 11 C 1.34020 * 121.54107 * 0.50857 * 10 8 7 12 12 S 1.71200 * 118.22319 * 179.71506 * 11 10 8 13 13 N 1.34027 * 123.55533 * 359.73923 * 11 10 8 14 14 C 1.34908 * 121.53901 * 0.02562 * 13 11 10 15 15 O 1.21642 * 120.91235 * 179.97438 * 14 13 11 16 16 C 1.40379 * 119.79280 * 0.25533 * 5 4 3 17 17 C 1.36493 * 120.09323 * 359.50655 * 16 5 4 18 18 C 1.39187 * 120.31531 * 0.47298 * 17 16 5 19 19 O 1.35510 * 119.89002 * 179.76306 * 18 17 16 20 20 C 1.34697 * 117.00185 * 6.09482 * 19 18 17 21 21 H 1.08002 * 120.00018 * 354.83569 * 20 19 18 22 22 C 1.38809 * 120.00221 * 174.83733 * 20 19 18 23 23 N 1.31448 * 119.99771 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00328 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47347 * 89.99797 * 24 22 20 26 26 H 1.48498 * 109.46794 * 209.99715 * 24 22 20 27 27 H 1.48501 * 109.46958 * 329.99202 * 24 22 20 28 28 H 1.09005 * 109.47335 * 299.99836 * 1 2 3 29 29 H 1.09000 * 109.47413 * 59.99970 * 1 2 3 30 30 H 1.08997 * 109.47047 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.15527 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.99900 * 315.08300 * 6 5 4 33 33 H 0.96998 * 119.22704 * 180.22725 * 10 8 7 34 34 H 0.96998 * 119.23213 * 179.97438 * 13 11 10 35 35 H 1.07993 * 119.95291 * 179.72356 * 16 5 4 36 36 H 1.07994 * 119.83943 * 180.23503 * 17 16 5 37 37 H 0.96997 * 120.00527 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2958 2.3690 0.0005 5 6 1.9410 3.6156 0.0011 6 6 1.1546 4.8484 0.0011 7 6 1.4938 5.8845 0.8509 8 6 2.5058 5.7118 1.9118 9 8 3.0718 4.6464 2.0681 10 7 2.7888 6.7693 2.7001 11 6 2.1688 7.9470 2.5425 12 16 2.5886 9.2301 3.5953 13 7 1.2376 8.1745 1.6058 14 6 0.8554 7.2112 0.7421 15 8 0.0087 7.4301 -0.1034 16 6 3.3435 3.6751 -0.0044 17 6 4.0773 2.5242 0.0000 18 6 3.4419 1.2858 0.0000 19 8 4.1790 0.1487 -0.0005 20 6 5.5130 0.2845 0.1265 21 1 5.9568 1.2691 0.1388 22 6 6.3175 -0.8408 0.2415 23 7 5.7773 -2.0391 0.2269 24 14 8.1675 -0.6524 0.4183 25 1 8.5202 -0.5585 1.8577 26 1 8.8445 -1.8303 -0.1814 27 1 8.6085 0.5811 -0.2810 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2171 2.3163 0.0014 32 1 0.3061 4.9477 -0.6596 33 1 3.4537 6.6739 3.3998 34 1 0.8284 9.0520 1.5480 35 1 3.8425 4.6328 -0.0085 36 1 5.1561 2.5748 -0.0003 37 1 6.3394 -2.8256 0.3069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096193597.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:18 Heat of formation + Delta-G solvation = -45.953512 kcal Electronic energy + Delta-G solvation = -27409.678780 eV Core-core repulsion = 23246.374232 eV Total energy + Delta-G solvation = -4163.304548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.18445 -40.00615 -39.47920 -38.04026 -37.95376 -36.48271 -34.66551 -33.43161 -32.68201 -29.98648 -29.46275 -27.44197 -26.44964 -25.79439 -24.11759 -23.77630 -21.91877 -21.43079 -19.82260 -19.47224 -18.51565 -18.18830 -17.60594 -17.25345 -16.84370 -16.37418 -15.99690 -15.65290 -15.38836 -15.12100 -14.90703 -14.78131 -14.40887 -14.19354 -13.89790 -13.81525 -13.49608 -13.26979 -12.70317 -12.32825 -12.10791 -11.84795 -11.80883 -11.46850 -11.29233 -11.08218 -10.97956 -10.75516 -10.73713 -10.65042 -10.29874 -9.88698 -9.67245 -9.18222 -8.59002 -8.24644 -8.18005 -7.14352 -6.96853 -4.36319 -0.42375 0.58620 1.16664 1.75875 1.95381 2.15176 2.16166 2.41729 2.88735 2.90812 2.95606 3.09869 3.59169 3.62228 3.78264 4.14232 4.18778 4.60213 4.73616 4.84554 5.15910 5.21009 5.34623 5.40904 5.43951 5.46515 5.69516 5.74183 5.75863 5.91073 6.00094 6.07536 6.25615 6.40668 6.56450 6.69617 6.81577 7.01302 7.11085 7.26037 7.42724 7.45768 7.89985 8.44601 9.12400 10.16601 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.003030 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.852754 B = 9239.795125 C =10988.095296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.304 6.304 3 C 0.045 3.955 4 C -0.117 4.117 5 C -0.216 4.216 6 C 0.175 3.825 7 C -0.353 4.353 8 C 0.545 3.455 9 O -0.443 6.443 10 N -0.615 5.615 11 C 0.564 3.436 12 S -0.557 6.557 13 N -0.618 5.618 14 C 0.562 3.438 15 O -0.488 6.488 16 C 0.020 3.980 17 C -0.231 4.231 18 C 0.159 3.841 19 O -0.125 6.125 20 C -0.376 4.376 21 H 0.106 0.894 22 C 0.041 3.959 23 N -0.824 5.824 24 Si 0.951 3.049 25 H -0.266 1.266 26 H -0.272 1.272 27 H -0.261 1.261 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.145 0.855 33 H 0.444 0.556 34 H 0.443 0.557 35 H 0.107 0.893 36 H 0.138 0.862 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.305 10.096 -0.283 12.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.218 6.218 3 C 0.000 4.000 4 C -0.137 4.137 5 C -0.218 4.218 6 C 0.154 3.846 7 C -0.361 4.361 8 C 0.334 3.666 9 O -0.313 6.313 10 N -0.264 5.264 11 C 0.212 3.788 12 S -0.425 6.425 13 N -0.266 5.266 14 C 0.353 3.647 15 O -0.362 6.362 16 C 0.001 3.999 17 C -0.250 4.250 18 C 0.099 3.901 19 O -0.023 6.023 20 C -0.451 4.451 21 H 0.123 0.877 22 C -0.169 4.169 23 N -0.452 5.452 24 Si 0.773 3.227 25 H -0.191 1.191 26 H -0.197 1.197 27 H -0.185 1.185 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.143 0.857 32 H 0.163 0.837 33 H 0.289 0.711 34 H 0.288 0.712 35 H 0.125 0.875 36 H 0.155 0.845 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.116 9.325 -0.236 11.732 hybrid contribution 0.484 0.103 -0.032 0.496 sum -6.631 9.428 -0.268 11.530 Atomic orbital electron populations 1.22923 0.80021 1.03218 1.00398 1.86229 1.19689 1.26020 1.89844 1.17868 0.89167 0.84622 1.08336 1.20703 0.98389 0.90374 1.04194 1.17922 0.92987 0.90766 1.20129 1.23108 0.89947 0.88020 0.83521 1.21313 1.11232 0.96442 1.07121 1.18901 0.82629 0.83311 0.81743 1.91085 1.48352 1.23513 1.68339 1.44363 1.38493 1.08716 1.34795 1.22026 0.81017 0.89905 0.85845 1.93844 1.73828 1.32120 1.42661 1.44130 1.35647 1.18030 1.28799 1.18852 0.81402 0.84490 0.79950 1.90896 1.30365 1.81520 1.33398 1.20430 0.91642 0.97147 0.90724 1.20462 1.00752 0.90619 1.13190 1.18956 0.88199 0.87218 0.95752 1.83900 1.20144 1.27028 1.71204 1.21838 0.78218 0.95634 1.49372 0.87698 1.25610 1.01726 0.93958 0.95573 1.70004 1.37597 0.98195 1.39449 0.85539 0.78542 0.79088 0.79485 1.19150 1.19670 1.18509 0.93447 0.93376 0.88880 0.85711 0.83716 0.71134 0.71236 0.87506 0.84473 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.30 -5.93 10.28 -34.13 -0.35 -6.28 16 3 C 0.04 0.88 6.70 -39.11 -0.26 0.62 16 4 C -0.12 -1.85 8.79 -38.89 -0.34 -2.20 16 5 C -0.22 -3.30 4.77 -105.08 -0.50 -3.80 16 6 C 0.17 2.13 9.44 -36.38 -0.34 1.79 16 7 C -0.35 -4.27 5.91 -102.23 -0.60 -4.88 16 8 C 0.54 6.93 7.33 -12.37 -0.09 6.84 16 9 O -0.44 -7.01 13.01 5.23 0.07 -6.94 16 10 N -0.62 -6.51 5.15 -14.14 -0.07 -6.58 16 11 C 0.56 6.00 7.77 -88.26 -0.69 5.32 16 12 S -0.56 -7.32 30.63 -107.50 -3.29 -10.61 16 13 N -0.62 -5.95 5.15 -14.14 -0.07 -6.03 16 14 C 0.56 6.35 7.96 -12.37 -0.10 6.25 16 15 O -0.49 -6.39 17.40 5.24 0.09 -6.30 16 16 C 0.02 0.33 6.53 -39.41 -0.26 0.07 16 17 C -0.23 -4.49 9.09 -39.86 -0.36 -4.86 16 18 C 0.16 3.51 6.68 -38.65 -0.26 3.25 16 19 O -0.13 -3.26 9.52 -13.37 -0.13 -3.38 16 20 C -0.38 -9.33 9.48 30.94 0.29 -9.04 16 21 H 0.11 2.35 5.18 -52.49 -0.27 2.08 16 22 C 0.04 1.01 5.50 -17.50 -0.10 0.91 16 23 N -0.82 -21.60 13.67 55.49 0.76 -20.85 16 24 Si 0.95 18.04 29.55 -169.99 -5.02 13.01 16 25 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 26 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 27 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 28 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 29 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.13 1.57 6.29 -52.49 -0.33 1.24 16 32 H 0.15 1.43 7.79 -52.49 -0.41 1.02 16 33 H 0.44 4.15 8.64 -40.82 -0.35 3.80 16 34 H 0.44 3.50 8.64 -40.82 -0.35 3.15 16 35 H 0.11 1.61 7.05 -52.49 -0.37 1.24 16 36 H 0.14 2.62 5.61 -52.49 -0.29 2.33 16 37 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 342.42 15.07 5.16 5.16 Total: -1.00 -30.39 342.42 -8.21 -38.61 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -2.73 Total: 8.53 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -2.62 Total: 1.66 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.61 Total: -33.45 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.32 Total: -22.90 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.02 Total: 13.01 kcal Atomic # 16 Polarization: -7.32 SS G_CDS: -3.29 Total: -10.61 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.39 -8.21 -38.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096193597.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.347 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds