Wall clock time and date at job start Tue Mar 31 2020 05:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00061 * 2 1 4 4 H 1.48500 * 109.46830 * 239.99825 * 3 2 1 5 5 H 1.48498 * 109.47167 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47078 * 120.00256 * 3 2 1 7 7 C 1.37881 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99819 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00318 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47109 * 179.97438 * 9 7 2 11 11 C 1.46505 * 120.00443 * 270.00178 * 10 9 7 12 12 C 1.50700 * 109.46995 * 270.00329 * 11 10 9 13 13 C 1.34512 * 125.79056 * 89.71064 * 12 11 10 14 14 C 1.41379 * 106.84107 * 179.88684 * 13 12 11 15 15 C 1.34515 * 106.84054 * 0.37622 * 14 13 12 16 16 O 1.34303 * 125.78592 * 270.02013 * 12 11 10 17 17 C 1.34784 * 119.99940 * 90.00128 * 10 9 7 18 18 O 1.21582 * 119.99913 * 0.02562 * 17 10 9 19 19 N 1.34781 * 119.99816 * 179.97438 * 17 10 9 20 20 C 1.46502 * 119.99429 * 179.97438 * 19 17 10 21 21 C 1.50699 * 109.46722 * 180.02562 * 20 19 17 22 22 C 1.38237 * 120.00455 * 104.99942 * 21 20 19 23 23 C 1.38224 * 120.01313 * 179.74163 * 22 21 20 24 24 C 1.38264 * 120.02445 * 0.26351 * 23 22 21 25 25 C 1.38190 * 120.01695 * 0.02562 * 24 23 22 26 26 C 1.38328 * 120.01174 * 285.27677 * 21 20 19 27 27 Cl 1.73603 * 120.01189 * 0.02562 * 26 21 20 28 28 H 0.96992 * 119.99752 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46742 * 60.00230 * 9 7 2 30 30 H 1.09000 * 109.47389 * 300.00108 * 9 7 2 31 31 H 1.08995 * 109.46654 * 29.99616 * 11 10 9 32 32 H 1.08996 * 109.47453 * 150.00097 * 11 10 9 33 33 H 1.07996 * 126.58015 * 0.02913 * 13 12 11 34 34 H 1.08007 * 126.58337 * 180.16697 * 14 13 12 35 35 H 1.08008 * 125.78990 * 179.74859 * 15 14 13 36 36 H 0.96994 * 120.00333 * 0.02562 * 19 17 10 37 37 H 1.08993 * 109.47125 * 60.00670 * 20 19 17 38 38 H 1.08991 * 109.47416 * 300.00014 * 20 19 17 39 39 H 1.08002 * 119.99593 * 0.02780 * 22 21 20 40 40 H 1.07996 * 119.98813 * 180.23496 * 23 22 21 41 41 H 1.08004 * 119.98845 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.00844 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 2.6781 -4.1701 -1.2674 12 6 1.7610 -5.2844 -1.7012 13 6 0.6648 -5.1473 -2.4687 14 6 0.1124 -6.4389 -2.6282 15 6 0.8993 -7.2869 -1.9418 16 8 1.8963 -6.5820 -1.3824 17 6 2.6418 -4.1244 1.1686 18 8 2.2472 -3.6622 2.2216 19 7 3.5172 -5.1492 1.1684 20 6 3.9945 -5.7050 2.4371 21 6 4.9570 -6.8313 2.1615 22 6 6.3146 -6.6394 2.3381 23 6 7.1971 -7.6740 2.0905 24 6 6.7231 -8.8997 1.6608 25 6 5.3668 -9.0910 1.4781 26 6 4.4828 -8.0557 1.7261 27 17 2.7788 -8.2951 1.4965 28 1 -0.4849 0.8400 -0.0004 29 1 0.6240 -2.5575 -0.8881 30 1 0.6247 -2.5564 0.8919 31 1 2.6852 -3.3888 -2.0273 32 1 3.6876 -4.5600 -1.1376 33 1 0.2817 -4.2275 -2.8852 34 1 -0.7736 -6.6951 -3.1903 35 1 0.7538 -8.3536 -1.8549 36 1 3.8317 -5.5182 0.3283 37 1 3.1476 -6.0824 3.0099 38 1 4.5008 -4.9262 3.0073 39 1 6.6853 -5.6823 2.6741 40 1 8.2572 -7.5248 2.2323 41 1 7.4133 -9.7076 1.4671 42 1 4.9967 -10.0486 1.1428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096406776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:44 Heat of formation + Delta-G solvation = 15.846753 kcal Electronic energy + Delta-G solvation = -28254.527033 eV Core-core repulsion = 24227.691733 eV Total energy + Delta-G solvation = -4026.835300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.103 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.24065 -39.90495 -39.04199 -36.48143 -35.35717 -34.53840 -32.75888 -32.59641 -31.32678 -30.87486 -30.07786 -27.51526 -25.99244 -25.13231 -22.94998 -22.72733 -21.49829 -21.41647 -20.46903 -19.30915 -17.84513 -17.25671 -16.94216 -16.25777 -16.02038 -15.94619 -15.46318 -15.37762 -14.72144 -14.56843 -14.09127 -14.02126 -13.84435 -13.63120 -13.19937 -12.89363 -12.74302 -12.53702 -12.48862 -12.28760 -12.05826 -11.70161 -11.61440 -11.58402 -11.47689 -11.17481 -10.89310 -10.77847 -10.53989 -10.14351 -9.69767 -9.59729 -9.41779 -9.12079 -8.87806 -8.59442 -8.39475 -8.23827 -7.67528 -6.00038 -4.04612 0.85877 0.97356 1.97430 2.05649 2.87873 3.22818 3.24647 3.34465 3.39149 3.42167 3.67717 4.03545 4.43224 4.46447 4.53676 4.65275 4.70631 4.99196 5.00109 5.08913 5.20587 5.31804 5.33425 5.34423 5.53443 5.55344 5.64550 5.87107 5.90909 5.94017 6.07027 6.11348 6.22196 6.24247 6.35333 6.51445 6.76958 6.82339 6.91964 7.39686 7.44170 7.58440 7.78108 7.99327 8.27866 8.70619 8.96819 9.39050 9.61296 11.07873 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.010872 B = 0.003794 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.811502 B = 7379.008291 C = 9131.244763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.263 3.737 10 N -0.607 5.607 11 C 0.195 3.805 12 C -0.028 4.028 13 C -0.194 4.194 14 C -0.214 4.214 15 C -0.049 4.049 16 O -0.168 6.168 17 C 0.706 3.294 18 O -0.580 6.580 19 N -0.747 5.747 20 C 0.180 3.820 21 C -0.093 4.093 22 C -0.089 4.089 23 C -0.120 4.120 24 C -0.106 4.106 25 C -0.115 4.115 26 C -0.020 4.020 27 Cl -0.052 7.052 28 H 0.263 0.737 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.193 0.807 36 H 0.391 0.609 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.453 -20.546 -1.958 23.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.076 0.924 9 C 0.144 3.856 10 N -0.342 5.342 11 C 0.070 3.930 12 C -0.079 4.079 13 C -0.214 4.214 14 C -0.234 4.234 15 C -0.117 4.117 16 O -0.064 6.064 17 C 0.408 3.592 18 O -0.457 6.457 19 N -0.406 5.406 20 C 0.055 3.945 21 C -0.095 4.095 22 C -0.108 4.108 23 C -0.138 4.138 24 C -0.124 4.124 25 C -0.134 4.134 26 C -0.048 4.048 27 Cl -0.023 7.023 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.134 0.866 32 H 0.092 0.908 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.210 0.790 36 H 0.226 0.774 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.030 -20.143 -0.983 22.986 hybrid contribution 0.129 0.590 -0.653 0.890 sum 11.159 -19.553 -1.636 22.572 Atomic orbital electron populations 1.69927 1.05970 1.27054 1.50405 1.24918 0.94840 0.99098 0.95145 0.86574 0.79508 0.82831 0.78565 1.20298 1.21263 1.20231 1.21435 0.93369 0.90681 1.51060 0.92439 1.19206 0.86780 0.81098 0.98530 1.47595 1.48589 1.36277 1.01695 1.19755 0.93310 0.90635 0.89331 1.23358 1.00853 0.82952 1.00782 1.21660 0.96997 0.98772 1.03978 1.21794 1.02779 0.93264 1.05518 1.23843 0.90203 0.97632 1.00046 1.84033 1.44440 1.18467 1.59442 1.15857 0.79233 0.79377 0.84725 1.90895 1.61505 1.63284 1.29968 1.45196 1.49711 1.37583 1.08129 1.19895 0.95502 0.92347 0.86737 1.19942 0.94901 0.93980 1.00637 1.21154 0.91515 0.99652 0.98446 1.21252 1.00107 0.93095 0.99338 1.21144 0.94720 0.97696 0.98859 1.21068 0.92921 0.98408 1.01020 1.20968 0.86210 0.95101 1.02485 1.98415 1.11911 1.96907 1.95092 0.92708 0.94900 0.93762 0.86567 0.90767 0.83362 0.83965 0.79004 0.77364 0.90571 0.90679 0.84721 0.85313 0.85212 0.84990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.53 -14.79 9.39 -34.44 -0.32 -15.11 16 8 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.26 6.89 5.16 -5.20 -0.03 6.87 16 10 N -0.61 -13.07 2.44 -182.19 -0.44 -13.51 16 11 C 0.20 3.27 5.70 -5.19 -0.03 3.24 16 12 C -0.03 -0.45 6.90 -35.63 -0.25 -0.69 16 13 C -0.19 -3.11 10.81 -39.70 -0.43 -3.54 16 14 C -0.21 -2.96 10.91 -39.70 -0.43 -3.40 16 15 C -0.05 -0.64 12.09 29.42 0.36 -0.28 16 16 O -0.17 -2.52 10.65 5.70 0.06 -2.46 16 17 C 0.71 15.42 8.28 -86.91 -0.72 14.70 16 18 O -0.58 -15.28 15.92 5.29 0.08 -15.20 16 19 N -0.75 -12.45 5.29 -66.42 -0.35 -12.80 16 20 C 0.18 2.62 5.13 -5.19 -0.03 2.60 16 21 C -0.09 -1.08 5.25 -104.59 -0.55 -1.63 16 22 C -0.09 -0.85 9.67 -39.59 -0.38 -1.24 16 23 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 24 C -0.11 -0.80 10.05 -39.59 -0.40 -1.20 16 25 C -0.12 -1.04 9.83 -39.55 -0.39 -1.43 16 26 C -0.02 -0.23 6.31 -39.50 -0.25 -0.48 16 27 Cl -0.05 -0.65 27.54 -51.86 -1.43 -2.08 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.04 1.33 7.42 -51.93 -0.39 0.95 16 31 H 0.12 1.89 8.07 -51.93 -0.42 1.47 16 32 H 0.07 1.06 6.36 -51.93 -0.33 0.73 16 33 H 0.15 2.36 8.06 -52.49 -0.42 1.94 16 34 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 35 H 0.19 1.79 8.06 -52.48 -0.42 1.36 16 36 H 0.39 5.86 6.19 -40.82 -0.25 5.61 16 37 H 0.08 1.21 7.60 -51.93 -0.39 0.81 16 38 H 0.07 1.10 7.95 -51.93 -0.41 0.69 16 39 H 0.13 1.14 8.00 -52.49 -0.42 0.72 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 381.12 15.07 5.74 5.74 Total: -1.00 -34.24 381.12 -10.08 -44.32 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.12 Total: 6.32 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -4.34 Total: -1.26 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.06 Total: -52.15 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.14 Total: -17.66 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.43 Total: -2.08 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.24 -10.08 -44.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096406776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.163 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds