Wall clock time and date at job start Tue Mar 31 2020 05:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00061 * 2 1 4 4 H 1.48500 * 109.46830 * 239.99825 * 3 2 1 5 5 H 1.48498 * 109.47167 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47078 * 120.00256 * 3 2 1 7 7 C 1.37881 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99819 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00318 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47109 * 179.97438 * 9 7 2 11 11 C 1.46505 * 120.00443 * 270.00178 * 10 9 7 12 12 C 1.50700 * 109.46995 * 270.00329 * 11 10 9 13 13 C 1.34512 * 125.79056 * 89.71064 * 12 11 10 14 14 C 1.41379 * 106.84107 * 179.88684 * 13 12 11 15 15 C 1.34515 * 106.84054 * 0.37622 * 14 13 12 16 16 O 1.34303 * 125.78592 * 270.02013 * 12 11 10 17 17 C 1.34784 * 119.99940 * 90.00128 * 10 9 7 18 18 O 1.21582 * 119.99913 * 0.02562 * 17 10 9 19 19 N 1.34781 * 119.99816 * 179.97438 * 17 10 9 20 20 C 1.46502 * 119.99429 * 179.97438 * 19 17 10 21 21 C 1.50699 * 109.46722 * 180.02562 * 20 19 17 22 22 C 1.38237 * 120.00455 * 104.99942 * 21 20 19 23 23 C 1.38224 * 120.01313 * 179.74163 * 22 21 20 24 24 C 1.38264 * 120.02445 * 0.26351 * 23 22 21 25 25 C 1.38190 * 120.01695 * 0.02562 * 24 23 22 26 26 C 1.38328 * 120.01174 * 285.27677 * 21 20 19 27 27 Cl 1.73603 * 120.01189 * 0.02562 * 26 21 20 28 28 H 0.96992 * 119.99752 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46742 * 60.00230 * 9 7 2 30 30 H 1.09000 * 109.47389 * 300.00108 * 9 7 2 31 31 H 1.08995 * 109.46654 * 29.99616 * 11 10 9 32 32 H 1.08996 * 109.47453 * 150.00097 * 11 10 9 33 33 H 1.07996 * 126.58015 * 0.02913 * 13 12 11 34 34 H 1.08007 * 126.58337 * 180.16697 * 14 13 12 35 35 H 1.08008 * 125.78990 * 179.74859 * 15 14 13 36 36 H 0.96994 * 120.00333 * 0.02562 * 19 17 10 37 37 H 1.08993 * 109.47125 * 60.00670 * 20 19 17 38 38 H 1.08991 * 109.47416 * 300.00014 * 20 19 17 39 39 H 1.08002 * 119.99593 * 0.02780 * 22 21 20 40 40 H 1.07996 * 119.98813 * 180.23496 * 23 22 21 41 41 H 1.08004 * 119.98845 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.00844 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 2.6781 -4.1701 -1.2674 12 6 1.7610 -5.2844 -1.7012 13 6 0.6648 -5.1473 -2.4687 14 6 0.1124 -6.4389 -2.6282 15 6 0.8993 -7.2869 -1.9418 16 8 1.8963 -6.5820 -1.3824 17 6 2.6418 -4.1244 1.1686 18 8 2.2472 -3.6622 2.2216 19 7 3.5172 -5.1492 1.1684 20 6 3.9945 -5.7050 2.4371 21 6 4.9570 -6.8313 2.1615 22 6 6.3146 -6.6394 2.3381 23 6 7.1971 -7.6740 2.0905 24 6 6.7231 -8.8997 1.6608 25 6 5.3668 -9.0910 1.4781 26 6 4.4828 -8.0557 1.7261 27 17 2.7788 -8.2951 1.4965 28 1 -0.4849 0.8400 -0.0004 29 1 0.6240 -2.5575 -0.8881 30 1 0.6247 -2.5564 0.8919 31 1 2.6852 -3.3888 -2.0273 32 1 3.6876 -4.5600 -1.1376 33 1 0.2817 -4.2275 -2.8852 34 1 -0.7736 -6.6951 -3.1903 35 1 0.7538 -8.3536 -1.8549 36 1 3.8317 -5.5182 0.3283 37 1 3.1476 -6.0824 3.0099 38 1 4.5008 -4.9262 3.0073 39 1 6.6853 -5.6823 2.6741 40 1 8.2572 -7.5248 2.2323 41 1 7.4133 -9.7076 1.4671 42 1 4.9967 -10.0486 1.1428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096406776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:43 Heat of formation + Delta-G solvation = -4.267542 kcal Electronic energy + Delta-G solvation = -28255.399254 eV Core-core repulsion = 24227.691733 eV Total energy + Delta-G solvation = -4027.707521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.103 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.41477 -41.18730 -40.21566 -37.34166 -37.00799 -36.01877 -34.76857 -33.81971 -32.38024 -31.62895 -31.52068 -29.30437 -27.21050 -26.64724 -24.59920 -23.65654 -22.61135 -22.40218 -21.77446 -20.84798 -19.26927 -18.78993 -18.09682 -17.84383 -17.47395 -16.92902 -16.71892 -16.49583 -16.20167 -16.09229 -15.35725 -15.32874 -14.89760 -14.74049 -14.45718 -14.32841 -14.00490 -13.81532 -13.70239 -13.66293 -13.52515 -13.25095 -13.00294 -12.71073 -12.52877 -12.51345 -12.42805 -12.27807 -12.17792 -11.75039 -11.65122 -11.15779 -10.78805 -10.59986 -10.20057 -9.93809 -9.66355 -9.55392 -9.33349 -8.17879 -6.32352 0.09898 0.27621 0.76980 1.22494 1.39814 1.44285 1.51306 1.67675 1.99372 2.03219 2.34593 2.45893 2.69620 3.11095 3.18669 3.53749 3.77216 3.79239 4.02538 4.09842 4.18220 4.30733 4.36011 4.40852 4.48975 4.55763 4.61449 4.74661 4.91038 4.95005 4.96922 5.06099 5.21223 5.23459 5.28211 5.40191 5.47096 5.51164 5.54675 5.63852 5.78684 5.86625 6.06455 6.09930 6.27321 6.76448 7.09204 7.34787 7.70416 8.89195 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.010872 B = 0.003794 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.811502 B = 7379.008291 C = 9131.244763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.968 3.032 4 H -0.259 1.259 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.057 0.943 9 C 0.284 3.716 10 N -0.611 5.611 11 C 0.195 3.805 12 C -0.046 4.046 13 C -0.208 4.208 14 C -0.227 4.227 15 C -0.036 4.036 16 O -0.172 6.172 17 C 0.701 3.299 18 O -0.635 6.635 19 N -0.724 5.724 20 C 0.182 3.818 21 C -0.110 4.110 22 C -0.094 4.094 23 C -0.113 4.113 24 C -0.095 4.095 25 C -0.117 4.117 26 C -0.034 4.034 27 Cl -0.074 7.074 28 H 0.266 0.734 29 H 0.025 0.975 30 H -0.006 1.006 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.140 0.860 34 H 0.165 0.835 35 H 0.233 0.767 36 H 0.402 0.598 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.142 0.858 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.332 -22.478 -3.038 26.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.190 4.190 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.075 0.925 9 C 0.163 3.837 10 N -0.345 5.345 11 C 0.072 3.928 12 C -0.098 4.098 13 C -0.229 4.229 14 C -0.246 4.246 15 C -0.103 4.103 16 O -0.068 6.068 17 C 0.403 3.597 18 O -0.516 6.516 19 N -0.382 5.382 20 C 0.058 3.942 21 C -0.111 4.111 22 C -0.112 4.112 23 C -0.131 4.131 24 C -0.113 4.113 25 C -0.136 4.136 26 C -0.061 4.061 27 Cl -0.045 7.045 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.012 0.988 31 H 0.137 0.863 32 H 0.120 0.880 33 H 0.158 0.842 34 H 0.183 0.817 35 H 0.249 0.751 36 H 0.239 0.761 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.160 0.840 40 H 0.177 0.823 41 H 0.182 0.818 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 13.957 -22.134 -2.109 26.253 hybrid contribution -0.733 1.031 -0.319 1.305 sum 13.224 -21.103 -2.428 25.023 Atomic orbital electron populations 1.70059 1.07618 1.28138 1.51067 1.25837 0.95726 1.02939 0.94467 0.85470 0.78265 0.78075 0.78991 1.18290 1.20590 1.20423 1.21701 0.93426 0.91695 1.51127 0.92479 1.18607 0.87010 0.82535 0.95585 1.47407 1.47916 1.35578 1.03610 1.19892 0.94723 0.91105 0.87099 1.23057 1.01280 0.83505 1.01948 1.21854 0.97235 0.99712 1.04062 1.22086 1.03890 0.92255 1.06359 1.24643 0.88625 0.99059 0.98001 1.84026 1.45209 1.17902 1.59624 1.16072 0.79640 0.80082 0.83905 1.90845 1.63556 1.65240 1.31932 1.45000 1.47847 1.35708 1.09623 1.19904 0.95603 0.93302 0.85417 1.19685 0.95119 0.93104 1.03219 1.21326 0.90773 1.00840 0.98304 1.21615 1.01288 0.92424 0.97789 1.21580 0.94471 0.98445 0.96779 1.21336 0.93343 0.98374 1.00535 1.21100 0.85481 0.95748 1.03746 1.98404 1.13825 1.96961 1.95304 0.92491 0.95682 0.98828 0.86348 0.88006 0.84200 0.81698 0.75099 0.76098 0.92449 0.91194 0.84006 0.82337 0.81836 0.83353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 2 C 0.01 0.54 5.46 84.65 0.46 1.00 16 3 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.54 -31.36 9.39 25.60 0.24 -31.12 16 8 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 9 C 0.28 15.74 5.16 85.63 0.44 16.18 16 10 N -0.61 -27.44 2.44 -848.58 -2.07 -29.51 16 11 C 0.20 6.63 5.70 85.63 0.49 7.12 16 12 C -0.05 -1.50 6.90 24.83 0.17 -1.33 16 13 C -0.21 -6.74 10.81 22.19 0.24 -6.50 16 14 C -0.23 -5.99 10.91 22.19 0.24 -5.75 16 15 C -0.04 -0.85 12.09 66.97 0.81 -0.04 16 16 O -0.17 -4.97 10.65 -2.53 -0.03 -5.00 16 17 C 0.70 32.01 8.28 179.05 1.48 33.49 16 18 O -0.63 -35.54 15.92 -3.97 -0.06 -35.60 16 19 N -0.72 -24.65 5.29 -482.31 -2.55 -27.20 16 20 C 0.18 5.47 5.13 85.63 0.44 5.91 16 21 C -0.11 -2.47 5.25 -19.84 -0.10 -2.57 16 22 C -0.09 -1.60 9.67 22.27 0.22 -1.39 16 23 C -0.11 -1.34 10.05 22.27 0.22 -1.12 16 24 C -0.09 -1.03 10.05 22.26 0.22 -0.81 16 25 C -0.12 -1.77 9.83 22.29 0.22 -1.55 16 26 C -0.03 -0.71 6.31 22.32 0.14 -0.57 16 27 Cl -0.07 -1.81 27.54 -2.72 -0.07 -1.89 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.03 1.41 8.07 -2.38 -0.02 1.39 16 30 H -0.01 -0.42 7.42 -2.39 -0.02 -0.43 16 31 H 0.12 3.93 8.07 -2.39 -0.02 3.91 16 32 H 0.10 2.83 6.36 -2.39 -0.02 2.81 16 33 H 0.14 4.65 8.06 -2.91 -0.02 4.63 16 34 H 0.17 3.48 8.06 -2.91 -0.02 3.45 16 35 H 0.23 3.48 8.06 -2.91 -0.02 3.46 16 36 H 0.40 11.92 6.19 -92.71 -0.57 11.35 16 37 H 0.06 1.94 7.60 -2.39 -0.02 1.92 16 38 H 0.07 2.15 7.95 -2.39 -0.02 2.13 16 39 H 0.14 2.15 8.00 -2.91 -0.02 2.13 16 40 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 41 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 42 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -78.56 381.12 3.94 -74.62 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.48 Total: 23.01 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 5.94 Total: 10.96 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -4.34 Total: -113.26 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -0.09 Total: -40.60 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.07 Total: -1.89 kcal Total: -78.56 3.94 -74.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096406776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.351 kcal (2) G-P(sol) polarization free energy of solvation -78.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds