Wall clock time and date at job start Tue Mar 31 2020 05:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.38628 * 110.99678 * 176.80898 * 14 13 12 16 16 C 1.39161 * 120.49027 * 303.80062 * 15 14 13 17 17 C 1.39128 * 118.27118 * 179.97438 * 16 15 14 18 18 N 1.38637 * 120.48869 * 180.02562 * 17 16 15 19 19 C 1.47014 * 110.99866 * 303.63510 * 18 17 16 20 20 C 1.53095 * 109.25868 * 177.60318 * 19 18 17 21 21 O 1.43020 * 109.25587 * 56.85138 * 20 19 18 22 22 C 1.43024 * 113.73715 * 301.32804 * 21 20 19 23 23 C 1.47006 * 111.00189 * 179.97438 * 18 17 16 24 24 N 1.33195 * 119.02989 * 359.97438 * 17 16 15 25 25 C 1.31727 * 120.87867 * 0.02562 * 24 17 16 26 26 N 1.31754 * 121.91538 * 359.73072 * 25 24 17 27 27 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 28 28 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 33 33 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 34 34 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 35 35 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 36 36 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 37 37 H 1.09001 * 109.51136 * 178.38097 * 13 12 11 38 38 H 1.08004 * 120.86844 * 359.96122 * 16 15 14 39 39 H 1.09002 * 109.50720 * 297.54224 * 19 18 17 40 40 H 1.09004 * 109.50640 * 57.66917 * 19 18 17 41 41 H 1.09001 * 109.50824 * 296.91846 * 20 19 18 42 42 H 1.08998 * 109.54339 * 176.80032 * 20 19 18 43 43 H 1.09000 * 109.50661 * 298.73644 * 22 21 20 44 44 H 1.08995 * 109.54141 * 178.62907 * 22 21 20 45 45 H 1.09002 * 109.51207 * 302.33011 * 23 18 17 46 46 H 1.08998 * 109.50891 * 62.41317 * 23 18 17 47 47 H 1.08009 * 119.04503 * 179.97438 * 25 24 17 48 48 H 1.08999 * 109.48998 * 299.35229 * 27 14 13 49 49 H 1.09002 * 109.48626 * 179.28754 * 27 14 13 50 50 H 1.09001 * 109.48531 * 303.15255 * 28 11 10 51 51 H 1.09000 * 109.48854 * 63.21719 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.7673 -5.1195 1.2374 13 6 -0.0453 -6.4140 1.1593 14 7 0.8616 -7.5446 0.9160 15 6 0.1683 -8.7451 0.9102 16 6 -0.6042 -9.1197 2.0054 17 6 -1.2810 -10.3340 1.9500 18 7 -2.0640 -10.7521 3.0149 19 6 -1.2803 -10.8013 4.2577 20 6 -2.1950 -11.2087 5.4158 21 8 -2.8089 -12.4644 5.1127 22 6 -3.5808 -12.4522 3.9088 23 6 -2.6805 -12.0570 2.7353 24 7 -1.1665 -11.0886 0.8584 25 6 -0.4250 -10.6988 -0.1582 26 7 0.2273 -9.5541 -0.1460 27 6 1.6048 -7.3594 -0.3380 28 6 2.4174 -6.0649 -0.2600 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.8718 -3.6005 -0.9002 33 1 2.8717 -3.6084 0.8798 34 1 1.4682 -5.1797 2.0700 35 1 0.0938 -4.2759 1.3889 36 1 -0.7649 -6.3431 0.3437 37 1 -0.5751 -6.5686 2.0993 38 1 -0.6763 -8.4845 2.8759 39 1 -0.4779 -11.5317 4.1534 40 1 -0.8545 -9.8182 4.4587 41 1 -2.9660 -10.4507 5.5546 42 1 -1.6075 -11.3019 6.3291 43 1 -4.3920 -11.7304 4.0038 44 1 -3.9954 -13.4445 3.7315 45 1 -3.2766 -11.9905 1.8251 46 1 -1.9008 -12.8076 2.6055 47 1 -0.3528 -11.3341 -1.0286 48 1 0.9039 -7.2992 -1.1706 49 1 2.2783 -8.2030 -0.4895 50 1 2.9469 -5.9105 -1.2002 51 1 3.1370 -6.1358 0.5556 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096415021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:29 Heat of formation + Delta-G solvation = 20.907082 kcal Electronic energy + Delta-G solvation = -30492.208823 eV Core-core repulsion = 26426.561393 eV Total energy + Delta-G solvation = -4065.647430 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.52628 -40.89332 -40.00068 -37.69592 -36.85966 -35.14723 -33.46255 -32.90756 -32.30599 -31.84381 -31.22819 -28.62259 -27.84127 -25.99631 -25.60496 -24.98187 -23.86820 -23.55026 -22.15318 -21.63704 -20.93082 -19.26546 -18.83025 -18.46186 -17.41560 -17.02918 -16.77197 -16.59935 -16.54652 -16.30557 -16.19982 -16.09168 -15.98445 -15.73010 -15.42210 -15.32500 -15.19399 -14.99103 -14.69454 -14.24356 -14.14499 -13.43583 -13.33991 -13.14630 -12.82140 -12.72498 -12.58695 -12.45484 -12.39422 -12.34964 -12.23752 -12.09132 -11.79746 -11.69157 -11.63021 -11.45127 -11.26826 -11.19687 -10.71495 -10.52318 -10.39703 -9.82428 -9.49539 -9.24416 -8.19052 -6.29883 -0.05699 -0.00087 1.41173 1.43944 1.51769 2.09587 2.25360 2.40875 2.79809 2.86173 2.98598 3.14468 3.16543 3.30534 3.68265 3.75699 3.84181 3.92267 3.96891 3.97945 4.06509 4.12185 4.18009 4.23418 4.31702 4.34146 4.42480 4.46422 4.47352 4.55529 4.65594 4.67665 4.73155 4.74743 4.77732 4.85365 4.87401 4.91641 4.95779 5.06757 5.11427 5.25466 5.43594 5.46374 5.65388 5.73764 5.78830 5.92615 6.08114 6.08361 6.14899 6.22843 6.31574 6.86907 7.11895 7.38938 8.92629 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.001913 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.727210 B =14631.401110 C =15584.936435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.037 3.963 10 C 0.081 3.919 11 N -0.554 5.554 12 C 0.059 3.941 13 C 0.077 3.923 14 N -0.476 5.476 15 C 0.364 3.636 16 C -0.260 4.260 17 C 0.362 3.638 18 N -0.477 5.477 19 C 0.023 3.977 20 C 0.064 3.936 21 O -0.400 6.400 22 C 0.062 3.938 23 C 0.034 3.966 24 N -0.585 5.585 25 C 0.342 3.658 26 N -0.588 5.588 27 C 0.083 3.917 28 C 0.055 3.945 29 H 0.263 0.737 30 H -0.002 1.002 31 H -0.009 1.009 32 H 0.066 0.934 33 H 0.024 0.976 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.108 0.892 38 H 0.158 0.842 39 H 0.050 0.950 40 H 0.108 0.892 41 H 0.070 0.930 42 H 0.126 0.874 43 H 0.066 0.934 44 H 0.122 0.878 45 H 0.095 0.905 46 H 0.052 0.948 47 H 0.225 0.775 48 H 0.049 0.951 49 H 0.097 0.903 50 H 0.092 0.908 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.792 -27.506 8.156 28.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.001 4.001 10 C -0.046 4.046 11 N -0.279 5.279 12 C -0.069 4.069 13 C -0.049 4.049 14 N -0.193 5.193 15 C 0.126 3.874 16 C -0.288 4.288 17 C 0.124 3.876 18 N -0.195 5.195 19 C -0.102 4.102 20 C -0.013 4.013 21 O -0.319 6.319 22 C -0.015 4.015 23 C -0.093 4.093 24 N -0.308 5.308 25 C 0.051 3.949 26 N -0.310 5.310 27 C -0.044 4.044 28 C -0.073 4.073 29 H 0.072 0.928 30 H 0.016 0.984 31 H 0.009 0.991 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.126 0.874 38 H 0.176 0.824 39 H 0.069 0.931 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.144 0.856 43 H 0.084 0.916 44 H 0.140 0.860 45 H 0.113 0.887 46 H 0.071 0.929 47 H 0.241 0.759 48 H 0.067 0.933 49 H 0.115 0.885 50 H 0.110 0.890 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.234 -27.714 7.645 29.060 hybrid contribution 0.795 1.446 0.196 1.661 sum -3.440 -26.269 7.841 27.629 Atomic orbital electron populations 1.70098 1.07747 1.27781 1.51403 1.25944 0.95750 1.03245 0.94720 0.85509 0.78257 0.78152 0.79159 1.19265 1.20945 1.19137 1.21596 0.93532 0.92263 1.50878 0.92164 1.18915 0.94196 0.91809 0.95146 1.21959 0.95377 0.87916 0.99349 1.62198 1.28422 1.02598 1.34713 1.22125 0.97473 0.96552 0.90743 1.22294 0.92846 0.87090 1.02628 1.59069 1.24355 1.00450 1.35459 1.20027 0.87079 0.91478 0.88813 1.21759 1.04961 0.99799 1.02252 1.19988 0.86924 0.89875 0.90817 1.59152 1.28817 1.29557 1.01938 1.23084 0.95546 1.03917 0.87693 1.22858 0.95981 0.85883 0.96588 1.88001 1.67572 1.33703 1.42634 1.22882 0.92592 1.03874 0.82139 1.22706 0.98838 0.87257 1.00454 1.68416 1.24010 1.35060 1.03332 1.25169 0.85007 0.89239 0.95454 1.68453 1.27599 1.08242 1.26744 1.21987 0.96904 0.97342 0.88168 1.22273 0.93972 0.89195 1.01874 0.92801 0.98419 0.99056 0.91594 0.95817 0.93814 0.90608 0.93719 0.87356 0.82444 0.93145 0.87349 0.91140 0.85643 0.91612 0.85998 0.88711 0.92917 0.75913 0.93281 0.88461 0.89007 0.94087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.54 -30.73 9.11 25.60 0.23 -30.50 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.04 1.93 4.91 29.85 0.15 2.08 16 10 C 0.08 3.37 4.90 86.30 0.42 3.79 16 11 N -0.55 -19.67 4.71 -895.72 -4.22 -23.89 16 12 C 0.06 1.92 5.41 86.31 0.47 2.39 16 13 C 0.08 2.06 5.37 86.31 0.46 2.52 16 14 N -0.48 -12.26 4.74 -701.05 -3.32 -15.58 16 15 C 0.36 8.95 6.40 132.96 0.85 9.80 16 16 C -0.26 -5.57 8.43 22.71 0.19 -5.38 16 17 C 0.36 7.56 6.40 132.95 0.85 8.41 16 18 N -0.48 -8.18 4.75 -700.59 -3.33 -11.51 16 19 C 0.02 0.31 5.40 86.31 0.47 0.78 16 20 C 0.06 0.70 7.01 72.01 0.50 1.20 16 21 O -0.40 -5.98 10.83 -148.98 -1.61 -7.59 16 22 C 0.06 0.74 7.01 72.01 0.50 1.24 16 23 C 0.03 0.52 4.83 86.31 0.42 0.94 16 24 N -0.59 -12.43 8.87 -197.83 -1.76 -14.18 16 25 C 0.34 6.90 12.28 180.92 2.22 9.12 16 26 N -0.59 -14.19 8.87 -197.83 -1.75 -15.94 16 27 C 0.08 2.17 4.80 86.31 0.41 2.58 16 28 C 0.05 1.56 5.61 86.31 0.48 2.05 16 29 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 30 H 0.00 -0.14 6.49 -2.38 -0.02 -0.15 16 31 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 32 H 0.07 2.67 8.03 -2.38 -0.02 2.65 16 33 H 0.02 0.97 8.12 -2.39 -0.02 0.95 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 2.80 6.34 -2.39 -0.02 2.79 16 36 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 2.37 6.86 -2.39 -0.02 2.35 16 38 H 0.16 2.88 6.46 -2.91 -0.02 2.86 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.11 1.22 6.90 -2.39 -0.02 1.21 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.09 1.49 7.88 -2.39 -0.02 1.47 16 46 H 0.05 0.90 8.04 -2.39 -0.02 0.88 16 47 H 0.22 2.87 8.06 -2.91 -0.02 2.85 16 48 H 0.05 1.42 8.06 -2.39 -0.02 1.40 16 49 H 0.10 2.35 7.85 -2.39 -0.02 2.33 16 50 H 0.09 2.44 8.07 -2.39 -0.02 2.42 16 51 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -68.81 396.73 -3.66 -72.47 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.91 Total: 14.77 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 9.10 Total: 11.58 kcal Atomic # 7 Polarization: -123.12 SS G_CDS: -14.09 Total: -137.21 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -1.61 Total: -7.59 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -68.81 -3.66 -72.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096415021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.381 kcal (2) G-P(sol) polarization free energy of solvation -68.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds