Wall clock time and date at job start Tue Mar 31 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99911 * 2 1 4 4 H 1.48501 * 109.47055 * 270.00411 * 3 2 1 5 5 H 1.48497 * 109.46874 * 30.00608 * 3 2 1 6 6 H 1.48500 * 109.47047 * 150.00224 * 3 2 1 7 7 C 1.37874 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99890 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00050 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.47223 * 184.88617 * 9 7 2 11 11 C 1.46893 * 111.00186 * 284.40189 * 10 9 7 12 12 C 1.50697 * 109.47288 * 169.99660 * 11 10 9 13 13 C 1.33557 * 122.06713 * 94.99682 * 12 11 10 14 14 S 1.76246 * 108.25138 * 180.02562 * 13 12 11 15 15 C 1.76168 * 89.85432 * 0.02562 * 14 13 12 16 16 C 1.47862 * 125.47764 * 179.97438 * 15 14 13 17 17 C 1.46846 * 127.14423 * 0.24452 * 16 15 14 18 18 C 1.34312 * 106.01639 * 180.13613 * 17 16 15 19 19 O 1.34170 * 109.04987 * 359.65760 * 18 17 16 20 20 C 1.34034 * 110.79913 * 0.22800 * 19 18 17 21 21 N 1.30249 * 109.04187 * 0.23977 * 15 14 13 22 22 C 1.46901 * 110.99972 * 160.44522 * 10 9 7 23 23 C 1.53179 * 109.54233 * 52.73347 * 22 10 9 24 24 C 1.53094 * 109.16575 * 183.15013 * 23 22 10 25 25 O 1.42905 * 109.40899 * 57.61088 * 24 23 22 26 26 C 1.42902 * 114.09984 * 298.83990 * 25 24 23 27 27 C 1.53091 * 109.41294 * 61.16424 * 26 25 24 28 28 H 0.97002 * 120.00257 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.46855 * 64.88974 * 9 7 2 30 30 H 1.09001 * 109.47318 * 304.89061 * 9 7 2 31 31 H 1.09002 * 109.47365 * 49.99517 * 11 10 9 32 32 H 1.09003 * 109.47315 * 290.00217 * 11 10 9 33 33 H 1.08001 * 125.87517 * 0.04749 * 13 12 11 34 34 H 1.08001 * 126.99509 * 0.03852 * 17 16 15 35 35 H 1.08002 * 125.47622 * 179.97438 * 18 17 16 36 36 H 1.08003 * 125.79102 * 180.02562 * 20 19 18 37 37 H 1.08991 * 109.54378 * 173.00412 * 22 10 9 38 38 H 1.08994 * 109.52784 * 303.05923 * 23 22 10 39 39 H 1.09010 * 109.51867 * 63.25003 * 23 22 10 40 40 H 1.09005 * 109.47742 * 297.63724 * 24 23 22 41 41 H 1.08998 * 109.48282 * 177.59611 * 24 23 22 42 42 H 1.08995 * 109.48166 * 301.18172 * 26 25 24 43 43 H 1.09003 * 109.49384 * 181.14991 * 26 25 24 44 44 H 1.08994 * 109.52480 * 182.48664 * 27 26 25 45 45 H 1.09000 * 109.52862 * 62.29220 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0011 -2.5739 -0.1196 11 6 3.8555 -3.2952 1.1518 12 6 4.1332 -4.7601 0.9329 13 6 5.3385 -5.2934 1.1489 14 16 5.2543 -7.0150 0.7811 15 6 3.5529 -6.8373 0.3600 16 6 2.6638 -7.9265 -0.0977 17 6 3.0159 -9.3401 -0.2820 18 6 1.8972 -9.9479 -0.7100 19 8 0.9110 -9.0420 -0.7926 20 6 1.3484 -7.8278 -0.4310 21 7 3.2057 -5.5911 0.5113 22 6 5.3949 -2.6000 -0.5831 23 6 6.2502 -1.7003 0.3143 24 6 7.6836 -1.6716 -0.2227 25 8 7.6748 -1.2100 -1.5752 26 6 6.9295 -2.0385 -2.4697 27 6 5.4659 -2.0819 -2.0229 28 1 -0.4850 0.8400 0.0004 29 1 3.8751 -0.7581 0.9294 30 1 3.8745 -0.6060 -0.8441 31 1 2.8396 -3.1699 1.5264 32 1 4.5626 -2.8960 1.8790 33 1 6.2140 -4.7613 1.4906 34 1 3.9790 -9.7978 -0.1102 35 1 1.8050 -10.9981 -0.9445 36 1 0.7569 -6.9244 -0.4077 37 1 5.7730 -3.6215 -0.5441 38 1 5.8407 -0.6902 0.3137 39 1 6.2499 -2.0939 1.3309 40 1 8.1064 -2.6756 -0.1841 41 1 8.2868 -0.9991 0.3871 42 1 7.3425 -3.0472 -2.4603 43 1 6.9895 -1.6305 -3.4787 44 1 4.9047 -2.7484 -2.6778 45 1 5.0405 -1.0795 -2.0706 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096421156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:46 Heat of formation + Delta-G solvation = 27.992450 kcal Electronic energy + Delta-G solvation = -28497.235775 eV Core-core repulsion = 24608.803953 eV Total energy + Delta-G solvation = -3888.431822 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.52792 -40.00362 -39.06490 -36.62085 -33.60527 -32.67712 -31.68971 -30.90455 -30.67251 -29.34322 -27.67752 -26.15555 -24.84134 -23.35362 -23.21861 -21.81224 -21.62292 -20.76225 -19.04025 -18.84515 -18.19603 -17.21023 -16.70549 -16.13493 -16.01737 -15.92166 -15.42365 -15.25462 -14.75588 -14.44907 -14.24193 -14.07435 -13.84437 -13.57173 -13.26506 -13.18693 -13.04061 -12.82149 -12.56184 -12.32151 -12.27818 -11.95664 -11.56893 -11.28754 -11.04025 -10.92897 -10.69433 -10.47349 -10.38369 -10.33740 -9.96703 -9.86974 -9.50998 -9.46636 -9.33831 -9.24549 -9.01348 -8.53890 -8.12574 -7.39683 -6.02640 -3.99304 0.50379 1.37037 1.70403 1.78112 2.29095 2.89779 3.22931 3.29208 3.36829 3.38227 3.93690 3.98469 4.43078 4.65052 4.67714 4.75634 4.99152 5.03096 5.07547 5.16786 5.21278 5.28325 5.34938 5.38326 5.44113 5.50243 5.56874 5.58578 5.72119 5.79754 5.81092 5.95411 5.95962 6.08954 6.11488 6.21628 6.23516 6.45732 6.48906 6.57162 6.81275 6.89343 6.91185 7.29791 7.61110 7.84992 7.90777 8.01572 8.67033 9.09942 9.59098 11.10589 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.009278 B = 0.003767 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.242714 B = 7431.069829 C = 9527.032737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.869 3.131 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.506 4.506 8 H 0.083 0.917 9 C 0.164 3.836 10 N -0.507 5.507 11 C 0.127 3.873 12 C 0.104 3.896 13 C -0.256 4.256 14 S 0.056 5.944 15 C 0.153 3.847 16 C -0.137 4.137 17 C -0.198 4.198 18 C -0.034 4.034 19 O -0.177 6.177 20 C 0.041 3.959 21 N -0.440 5.440 22 C 0.079 3.921 23 C -0.193 4.193 24 C 0.068 3.932 25 O -0.386 6.386 26 C 0.064 3.936 27 C -0.147 4.147 28 H 0.263 0.737 29 H -0.010 1.010 30 H 0.030 0.970 31 H 0.106 0.894 32 H 0.042 0.958 33 H 0.173 0.827 34 H 0.154 0.846 35 H 0.207 0.793 36 H 0.220 0.780 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.391 -17.010 0.210 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.697 3.303 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.544 4.544 8 H 0.101 0.899 9 C 0.038 3.962 10 N -0.230 5.230 11 C -0.003 4.003 12 C -0.028 4.028 13 C -0.396 4.396 14 S 0.312 5.688 15 C -0.123 4.123 16 C -0.142 4.142 17 C -0.218 4.218 18 C -0.100 4.100 19 O -0.072 6.072 20 C -0.032 4.032 21 N -0.154 5.154 22 C -0.030 4.030 23 C -0.233 4.233 24 C -0.009 4.009 25 O -0.305 6.305 26 C -0.014 4.014 27 C -0.185 4.185 28 H 0.073 0.927 29 H 0.008 0.992 30 H 0.048 0.952 31 H 0.124 0.876 32 H 0.060 0.940 33 H 0.190 0.810 34 H 0.171 0.829 35 H 0.223 0.777 36 H 0.237 0.763 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.110 0.890 44 H 0.097 0.903 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.981 -17.673 -0.355 21.354 hybrid contribution 0.953 2.037 0.939 2.437 sum 12.934 -15.636 0.584 20.301 Atomic orbital electron populations 1.69889 1.06079 1.26693 1.51159 1.24867 0.94663 0.98592 0.95003 0.86960 0.80315 0.84427 0.78636 1.20157 1.21231 1.19343 1.21055 0.88646 0.94790 1.49933 0.89897 1.20232 0.97063 0.83834 0.95072 1.62085 1.15699 1.17897 1.27275 1.20640 1.03487 0.84708 0.91476 1.20234 0.87491 0.97646 0.97470 1.26667 1.02907 0.95935 1.14050 1.84648 1.11691 1.08330 1.64145 1.24777 0.92936 0.92503 1.02071 1.19088 0.93264 0.91330 1.10503 1.22740 1.00340 0.91848 1.06870 1.23859 0.86050 0.95120 1.04997 1.83938 1.38731 1.17079 1.67471 1.24535 0.94216 0.86870 0.97597 1.66468 1.34503 0.99947 1.14448 1.21787 0.89248 0.97836 0.94147 1.22958 0.96889 1.03021 1.00391 1.22474 0.96184 0.98998 0.83265 1.87895 1.72525 1.51785 1.18248 1.22600 0.91073 0.94274 0.93408 1.22252 0.96164 1.03479 0.96608 0.92732 0.99188 0.95182 0.87629 0.93997 0.81004 0.82870 0.77686 0.76338 0.90885 0.90184 0.91317 0.93734 0.89428 0.93671 0.89005 0.90272 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.87 21.42 27.37 -169.99 -4.65 16.76 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.36 6.69 56.52 0.38 -5.98 16 7 C -0.51 -14.15 9.16 -34.44 -0.32 -14.47 16 8 H 0.08 2.57 7.89 -52.49 -0.41 2.15 16 9 C 0.16 3.82 2.38 -4.97 -0.01 3.81 16 10 N -0.51 -10.21 4.36 -229.30 -1.00 -11.21 16 11 C 0.13 2.37 5.10 -4.98 -0.03 2.34 16 12 C 0.10 1.75 5.57 -84.39 -0.47 1.28 16 13 C -0.26 -3.52 9.52 29.09 0.28 -3.24 16 14 S 0.06 0.70 23.33 -107.50 -2.51 -1.81 16 15 C 0.15 2.28 7.50 -14.29 -0.11 2.17 16 16 C -0.14 -1.78 6.32 -103.26 -0.65 -2.43 16 17 C -0.20 -1.96 11.05 -37.49 -0.41 -2.38 16 18 C -0.03 -0.29 12.04 29.35 0.35 0.07 16 19 O -0.18 -1.93 10.54 6.79 0.07 -1.86 16 20 C 0.04 0.50 12.05 29.95 0.36 0.87 16 21 N -0.44 -7.75 10.53 -7.55 -0.08 -7.83 16 22 C 0.08 1.32 2.12 -67.53 -0.14 1.17 16 23 C -0.19 -2.92 4.76 -26.59 -0.13 -3.05 16 24 C 0.07 0.89 6.84 37.21 0.25 1.15 16 25 O -0.39 -5.80 10.77 -35.23 -0.38 -6.18 16 26 C 0.06 0.87 6.84 37.20 0.25 1.12 16 27 C -0.15 -2.40 5.46 -26.59 -0.15 -2.55 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 29 H -0.01 -0.22 6.66 -51.93 -0.35 -0.57 16 30 H 0.03 0.72 5.02 -51.93 -0.26 0.46 16 31 H 0.11 2.26 7.31 -51.93 -0.38 1.88 16 32 H 0.04 0.70 6.48 -51.93 -0.34 0.37 16 33 H 0.17 1.96 8.06 -52.49 -0.42 1.54 16 34 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.21 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.22 2.56 8.06 -52.48 -0.42 2.14 16 37 H 0.07 1.15 5.88 -51.93 -0.31 0.85 16 38 H 0.08 1.41 6.57 -51.93 -0.34 1.07 16 39 H 0.07 0.95 6.77 -51.92 -0.35 0.60 16 40 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.08 1.47 6.19 -51.93 -0.32 1.15 16 LS Contribution 373.95 15.07 5.64 5.64 Total: -1.00 -32.75 373.95 -9.17 -41.92 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.02 Total: 3.47 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -1.01 Total: -12.22 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.31 Total: -45.72 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.31 Total: -8.03 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.65 Total: 16.76 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.51 Total: -1.81 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.75 -9.17 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096421156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.911 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds