Wall clock time and date at job start Tue Mar 31 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38282 * 119.93705 * 2 1 4 4 C 1.38111 * 120.06704 * 180.02562 * 3 2 1 5 5 C 1.38836 * 119.93902 * 359.97438 * 4 3 2 6 6 N 1.40184 * 120.07057 * 180.02562 * 5 4 3 7 7 C 1.35227 * 126.05395 * 180.23861 * 6 5 4 8 8 C 1.35318 * 107.71286 * 180.13692 * 7 6 5 9 9 S 1.76203 * 126.03522 * 179.90131 * 8 7 6 10 10 O 1.42107 * 106.39977 * 23.25815 * 9 8 7 11 11 O 1.42092 * 106.40269 * 156.17563 * 9 8 7 12 12 N 1.65599 * 107.21688 * 269.71770 * 9 8 7 13 13 C 1.46501 * 120.00046 * 89.99965 * 12 9 8 14 14 C 1.46502 * 120.00182 * 269.99864 * 12 9 8 15 15 H 1.09000 * 109.46484 * 0.02562 * 14 12 9 16 16 C 1.52996 * 109.47041 * 240.00539 * 14 12 9 17 17 C 1.50695 * 109.47054 * 120.00198 * 14 12 9 18 18 H 1.07993 * 120.00192 * 34.98893 * 17 14 12 19 19 C 1.37881 * 119.99584 * 214.98958 * 17 14 12 20 20 N 1.31513 * 119.99660 * 184.90691 * 19 17 14 21 21 Si 1.86801 * 120.00236 * 4.90339 * 19 17 14 22 22 H 1.48498 * 109.46994 * 84.83387 * 21 19 17 23 23 H 1.48500 * 109.47044 * 204.83595 * 21 19 17 24 24 H 1.48499 * 109.47070 * 324.83542 * 21 19 17 25 25 C 1.39915 * 107.93235 * 359.64051 * 8 7 6 26 26 N 1.30877 * 108.24281 * 0.22324 * 25 8 7 27 27 C 1.38841 * 119.86274 * 0.27695 * 5 4 3 28 28 C 1.38120 * 119.93092 * 359.42861 * 27 5 4 29 29 H 1.09003 * 109.47436 * 90.00168 * 1 2 3 30 30 H 1.09000 * 109.47208 * 210.00431 * 1 2 3 31 31 H 1.09004 * 109.47142 * 330.00049 * 1 2 3 32 32 H 1.08001 * 119.96364 * 359.97033 * 3 2 1 33 33 H 1.08001 * 120.03559 * 179.97438 * 4 3 2 34 34 H 1.08000 * 126.14304 * 0.02562 * 7 6 5 35 35 H 1.09000 * 109.47339 * 89.99799 * 13 12 9 36 36 H 1.08998 * 109.47149 * 210.00134 * 13 12 9 37 37 H 1.09004 * 109.47182 * 329.99990 * 13 12 9 38 38 H 1.08999 * 109.47522 * 54.97344 * 16 14 12 39 39 H 1.08998 * 109.47164 * 174.97821 * 16 14 12 40 40 H 1.09004 * 109.46681 * 294.97235 * 16 14 12 41 41 H 0.97006 * 119.99893 * 180.02562 * 20 19 17 42 42 H 1.07999 * 125.87898 * 180.20597 * 25 8 7 43 43 H 1.07995 * 120.03138 * 179.72378 * 27 5 4 44 44 H 1.07998 * 119.96483 * 180.27435 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5781 1.2014 -0.0005 5 6 4.2738 -0.0001 -0.0005 6 7 5.6756 -0.0001 -0.0005 7 6 6.4715 -1.0934 -0.0051 8 6 7.7559 -0.6676 -0.0002 9 16 9.1882 -1.6940 -0.0007 10 8 8.7861 -2.9436 -0.5450 11 8 10.2420 -0.9120 -0.5456 12 7 9.5872 -1.9794 1.5809 13 6 9.0247 -3.1369 2.2809 14 6 10.5028 -1.0744 2.2802 15 1 10.8143 -0.2787 1.6035 16 6 11.7317 -1.8552 2.7501 17 6 9.8029 -0.4742 3.4722 18 1 9.0882 -1.0606 4.0305 19 6 10.0750 0.8236 3.8500 20 7 9.5384 1.3158 4.9452 21 14 11.2059 1.8826 2.8065 22 1 10.4241 2.5121 1.7121 23 1 11.8135 2.9408 3.6528 24 1 12.2790 1.0368 2.2250 25 6 7.7460 0.7315 -0.0008 26 7 6.5001 1.1324 -0.0010 27 6 3.5781 -1.2016 -0.0058 28 6 2.1970 -1.1984 0.0009 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6554 2.1327 -0.0005 33 1 4.1166 2.1376 -0.0010 34 1 6.1412 -2.1216 -0.0098 35 1 9.6829 -3.9958 2.1501 36 1 8.9312 -2.9092 3.3427 37 1 8.0413 -3.3670 1.8707 38 1 12.1869 -2.3626 1.8996 39 1 12.4528 -1.1669 3.1910 40 1 11.4309 -2.5924 3.4946 41 1 9.7295 2.2290 5.2108 42 1 8.6165 1.3706 -0.0008 43 1 4.1165 -2.1378 -0.0103 44 1 1.6553 -2.1327 0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096421232.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:36 Heat of formation + Delta-G solvation = 36.427726 kcal Electronic energy + Delta-G solvation = -28802.807189 eV Core-core repulsion = 24849.315237 eV Total energy + Delta-G solvation = -3953.491952 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.125 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.57306 -39.38833 -36.72766 -36.29690 -35.29436 -34.38825 -32.49627 -31.58043 -30.96228 -30.26898 -29.92183 -26.70117 -25.68723 -25.17714 -23.54336 -22.90379 -21.26407 -20.70990 -20.53693 -18.91020 -17.92690 -17.37156 -16.52342 -16.27564 -15.70705 -15.62652 -15.41628 -15.30609 -14.70233 -14.40487 -14.04946 -13.96084 -13.81815 -13.68833 -13.16095 -12.94553 -12.64063 -12.58135 -12.51977 -12.44092 -11.96129 -11.90394 -11.78966 -11.75182 -11.54989 -11.42298 -11.21854 -11.17138 -10.80144 -10.70314 -10.53442 -10.33622 -10.28560 -9.82535 -9.46460 -9.32713 -9.30621 -8.65621 -8.25572 -8.03804 -6.21662 -4.22073 0.54959 1.02411 1.03749 1.93329 2.28442 2.48918 3.22437 3.32443 3.38235 3.47021 3.68214 4.20973 4.30913 4.35736 4.47738 4.53470 4.55321 4.72156 4.88575 5.01958 5.04826 5.12727 5.26167 5.29438 5.36143 5.49247 5.58309 5.63492 5.64771 5.71597 5.95942 6.05061 6.08866 6.15317 6.25013 6.37105 6.46106 6.46804 6.50123 6.58144 6.68668 6.96866 7.00013 7.19869 7.43570 7.48083 7.64940 8.39040 8.83398 9.39726 10.90292 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.012883 B = 0.003579 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.961098 B = 7822.057886 C = 8745.374144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.097 4.097 4 C -0.110 4.110 5 C 0.151 3.849 6 N -0.315 5.315 7 C 0.171 3.829 8 C -0.788 4.788 9 S 2.709 3.291 10 O -0.979 6.979 11 O -0.964 6.964 12 N -0.976 5.976 13 C 0.104 3.896 14 C 0.232 3.768 15 H 0.059 0.941 16 C -0.142 4.142 17 C -0.519 4.519 18 H 0.082 0.918 19 C 0.079 3.921 20 N -0.887 5.887 21 Si 0.856 3.144 22 H -0.269 1.269 23 H -0.284 1.284 24 H -0.256 1.256 25 C 0.154 3.846 26 N -0.289 5.289 27 C -0.136 4.136 28 C -0.094 4.094 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.191 0.809 35 H 0.047 0.953 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.029 0.971 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.266 0.734 42 H 0.200 0.800 43 H 0.133 0.867 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.263 -4.782 -9.290 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.116 4.116 4 C -0.129 4.129 5 C 0.059 3.941 6 N -0.087 5.087 7 C 0.023 3.977 8 C -0.883 4.883 9 S 2.797 3.203 10 O -0.969 6.969 11 O -0.954 6.954 12 N -0.816 5.816 13 C -0.042 4.042 14 C 0.129 3.871 15 H 0.076 0.924 16 C -0.202 4.202 17 C -0.559 4.559 18 H 0.100 0.900 19 C -0.125 4.125 20 N -0.524 5.524 21 Si 0.682 3.318 22 H -0.194 1.194 23 H -0.210 1.210 24 H -0.180 1.180 25 C -0.036 4.036 26 N -0.106 5.106 27 C -0.156 4.156 28 C -0.112 4.112 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.208 0.792 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.217 0.783 43 H 0.151 0.849 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.761 -3.880 -9.910 18.198 hybrid contribution 0.596 0.504 0.087 0.785 sum -14.164 -3.377 -9.824 17.565 Atomic orbital electron populations 1.20785 0.90698 1.03046 1.02436 1.20016 0.96521 0.93013 1.00206 1.20959 0.93009 0.98108 0.99519 1.20947 0.94228 0.97198 1.00546 1.17647 0.78363 0.95473 1.02655 1.46335 1.04195 1.05002 1.53135 1.22384 0.88937 0.93877 0.92522 1.32050 1.16822 1.09392 1.30074 1.01426 0.72861 0.72777 0.73217 1.93498 1.84227 1.41422 1.77760 1.93524 1.52777 1.71948 1.77154 1.57654 1.57914 1.35916 1.30066 1.21241 0.96494 0.86763 0.99673 1.19146 0.86713 0.88028 0.93237 0.92365 1.22153 0.98213 1.00312 0.99559 1.21192 1.25241 0.98279 1.11191 0.90029 1.24973 0.95239 0.97506 0.94794 1.69881 1.43640 1.16070 1.22844 0.87177 0.82522 0.81113 0.81019 1.19397 1.20975 1.18003 1.23640 0.95484 0.92445 0.92062 1.77463 1.01534 1.06294 1.25273 1.20875 0.94888 0.96142 1.03711 1.20838 0.92653 0.98136 0.99609 0.91035 0.91334 0.91355 0.85036 0.84215 0.79232 0.93484 0.90009 0.92948 0.95169 0.92620 0.92832 0.92357 0.78323 0.84914 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.10 -0.86 5.88 -104.59 -0.62 -1.48 16 3 C -0.10 -0.97 9.69 -39.61 -0.38 -1.35 16 4 C -0.11 -1.40 9.66 -39.41 -0.38 -1.78 16 5 C 0.15 2.09 6.69 -83.59 -0.56 1.54 16 6 N -0.32 -5.20 3.80 -10.70 -0.04 -5.24 16 7 C 0.17 2.71 10.54 -17.10 -0.18 2.53 16 8 C -0.79 -14.31 6.17 -39.99 -0.25 -14.55 16 9 S 2.71 51.86 5.78 -107.50 -0.62 51.24 16 10 O -0.98 -18.67 16.92 -57.17 -0.97 -19.64 16 11 O -0.96 -20.70 16.43 -57.17 -0.94 -21.64 16 12 N -0.98 -19.24 3.06 -115.85 -0.35 -19.59 16 13 C 0.10 1.74 9.44 59.85 0.56 2.30 16 14 C 0.23 5.21 2.28 -69.09 -0.16 5.06 16 15 H 0.06 1.37 4.06 -51.93 -0.21 1.16 16 16 C -0.14 -2.89 9.10 37.16 0.34 -2.55 16 17 C -0.52 -13.36 8.72 -34.44 -0.30 -13.66 16 18 H 0.08 2.25 6.82 -52.49 -0.36 1.89 16 19 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 20 N -0.89 -25.69 13.96 55.43 0.77 -24.91 16 21 Si 0.86 20.48 26.99 -169.99 -4.59 15.89 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.26 -5.88 6.82 56.52 0.39 -5.50 16 25 C 0.15 2.91 11.82 -17.33 -0.20 2.71 16 26 N -0.29 -5.38 11.87 30.64 0.36 -5.02 16 27 C -0.14 -1.49 9.46 -39.40 -0.37 -1.86 16 28 C -0.09 -0.85 9.69 -39.61 -0.38 -1.23 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.14 1.86 7.70 -52.49 -0.40 1.46 16 34 H 0.19 2.25 7.04 -52.49 -0.37 1.88 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.42 6.56 -51.93 -0.34 1.08 16 37 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 1.02 7.84 -51.93 -0.41 0.61 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.20 3.56 8.06 -52.49 -0.42 3.14 16 43 H 0.13 1.20 6.74 -52.49 -0.35 0.85 16 44 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 380.24 15.07 5.73 5.73 Total: -1.00 -33.11 380.24 -9.06 -42.17 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.80 Total: 3.60 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -2.62 Total: -22.60 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.74 Total: -54.76 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -1.91 Total: -41.28 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.59 Total: 15.89 kcal Atomic # 16 Polarization: 51.86 SS G_CDS: -0.62 Total: 51.24 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.11 -9.06 -42.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096421232.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.602 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds